Wall clock time and date at job start Wed Apr 1 2020 05:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 C 1.50702 * 109.47630 * 120.00515 * 2 1 3 5 5 C 1.35312 * 126.66891 * 119.99667 * 4 2 1 6 6 C 1.42274 * 103.92102 * 179.73989 * 5 4 2 7 7 C 1.48327 * 126.93722 * 180.26368 * 6 5 4 8 8 O 1.21493 * 120.00220 * 353.64199 * 7 6 5 9 9 N 1.34783 * 119.99850 * 173.64889 * 7 6 5 10 10 C 1.46934 * 120.70022 * 184.32264 * 9 7 6 11 11 C 1.53186 * 108.93139 * 125.84135 * 10 9 7 12 12 C 1.53169 * 109.27616 * 55.21485 * 11 10 9 13 13 C 1.52243 * 109.64832 * 299.82750 * 12 11 10 14 14 C 1.54480 * 110.29445 * 182.00310 * 13 12 11 15 15 C 1.55025 * 101.52828 * 153.34394 * 14 13 12 16 16 N 1.47487 * 104.90694 * 323.65316 * 15 14 13 17 17 C 1.36934 * 125.66222 * 204.03312 * 16 15 14 18 18 H 1.08001 * 119.99994 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00101 * 359.97438 * 17 16 15 20 20 N 1.31622 * 120.00111 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00194 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46941 * 89.99940 * 21 19 17 23 23 H 1.48501 * 109.47517 * 210.00087 * 21 19 17 24 24 H 1.48500 * 109.47025 * 330.00153 * 21 19 17 25 25 C 1.47183 * 108.67380 * 24.01552 * 16 15 14 26 26 C 1.47073 * 120.70097 * 4.03907 * 9 7 6 27 27 N 1.30987 * 106.12294 * 0.25930 * 6 5 4 28 28 O 1.20905 * 111.44196 * 0.02562 * 27 6 5 29 29 H 1.09001 * 109.46595 * 299.99395 * 1 2 3 30 30 H 1.08998 * 109.47328 * 59.99791 * 1 2 3 31 31 H 1.08998 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46856 * 240.00123 * 2 1 3 33 33 H 1.08999 * 109.47437 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47049 * 300.00380 * 3 2 1 35 35 H 1.09000 * 109.47014 * 60.00220 * 3 2 1 36 36 H 1.08000 * 128.03675 * 359.97438 * 5 4 2 37 37 H 1.08998 * 109.56193 * 245.67555 * 10 9 7 38 38 H 1.08998 * 109.56470 * 5.89775 * 10 9 7 39 39 H 1.09001 * 109.50301 * 175.15125 * 11 10 9 40 40 H 1.08997 * 109.50041 * 295.27288 * 11 10 9 41 41 H 1.09004 * 109.44333 * 59.87470 * 12 11 10 42 42 H 1.08998 * 109.44202 * 179.80643 * 12 11 10 43 43 H 1.08999 * 111.01025 * 271.40784 * 14 13 12 44 44 H 1.09000 * 111.01065 * 35.27911 * 14 13 12 45 45 H 1.09005 * 110.34822 * 204.80126 * 15 14 13 46 46 H 1.08996 * 110.44393 * 82.56054 * 15 14 13 47 47 H 0.96999 * 119.99957 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.91142 * 239.09400 * 25 16 15 49 49 H 1.09006 * 109.90743 * 117.82790 * 25 16 15 50 50 H 1.08995 * 109.58277 * 352.26008 * 26 9 7 51 51 H 1.09000 * 109.58088 * 112.65911 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8134 -1.8150 1.2634 6 6 2.9967 -2.0632 2.6523 7 6 3.7831 -3.1613 3.2653 8 8 4.2587 -4.0325 2.5646 9 7 3.9700 -3.1927 4.5997 10 6 4.8240 -4.2188 5.2137 11 6 5.8881 -3.5302 6.0740 12 6 5.2009 -2.6121 7.0894 13 6 4.3854 -1.5566 6.3555 14 6 3.7258 -0.5913 7.3651 15 6 3.5807 0.6960 6.5136 16 7 4.7873 0.7283 5.6661 17 6 5.3387 1.8489 5.1047 18 1 6.2280 1.7669 4.4973 19 6 4.7549 3.0904 5.3163 20 7 3.6715 3.1905 6.0570 21 14 5.5076 4.6192 4.5511 22 1 4.9131 4.8451 3.2092 23 1 5.2332 5.7932 5.4181 24 1 6.9751 4.4347 4.4176 25 6 5.3004 -0.6439 5.5243 26 6 3.3285 -2.1969 5.4715 27 7 2.3308 -1.1262 3.2802 28 8 1.7895 -0.3732 2.5045 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.2091 -2.3754 0.4292 37 1 4.2164 -4.8729 5.8390 38 1 5.3076 -4.8061 4.4331 39 1 6.4727 -4.2836 6.6019 40 1 6.5455 -2.9396 5.4360 41 1 4.5412 -3.2032 7.7247 42 1 5.9556 -2.1232 7.7054 43 1 2.7511 -0.9628 7.6814 44 1 4.3748 -0.4208 8.2241 45 1 3.5462 1.5747 7.1578 46 1 2.6844 0.6445 5.8955 47 1 3.2633 4.0579 6.2046 48 1 6.3216 -0.6991 5.9014 49 1 5.2720 -0.9443 4.4768 50 1 2.8515 -1.4303 4.8610 51 1 2.5814 -2.6860 6.0966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054172050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:54 Heat of formation + Delta-G solvation = 59.162236 kcal Electronic energy + Delta-G solvation = -33202.092037 eV Core-core repulsion = 29105.810724 eV Total energy + Delta-G solvation = -4096.281313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.87886 -40.33639 -38.37578 -36.13789 -35.66071 -33.99206 -32.97522 -32.13734 -30.57044 -29.99470 -28.31281 -27.27873 -26.14732 -25.63091 -24.29879 -23.66296 -23.10619 -22.14086 -21.13596 -20.05098 -19.11284 -18.11082 -17.52625 -17.10784 -16.87905 -16.66238 -15.81665 -15.19323 -15.15141 -14.85008 -14.42741 -14.40455 -13.97184 -13.83695 -13.46468 -13.34195 -13.32470 -13.03789 -12.86254 -12.53122 -12.31484 -12.29038 -12.09088 -11.68592 -11.49817 -11.48441 -11.38767 -11.09399 -11.00544 -10.94447 -10.83513 -10.76489 -10.40662 -10.26032 -10.21432 -10.12841 -9.97289 -9.71231 -9.59033 -9.40478 -9.30341 -8.59200 -8.49970 -6.75728 -5.59813 -3.00169 1.33658 1.79971 2.86078 3.11704 3.32919 3.40514 3.45958 3.47672 4.05559 4.35174 4.52403 4.74766 4.82243 4.92035 5.01214 5.03857 5.12602 5.14574 5.21959 5.28632 5.36692 5.45497 5.51700 5.54175 5.60181 5.64448 5.70355 5.72007 5.76705 5.80997 5.88023 5.96733 5.99099 6.02826 6.05868 6.07986 6.21363 6.24368 6.35927 6.37792 6.43874 6.60651 6.68797 6.75004 6.81404 6.98488 7.40512 7.60216 7.67790 7.91348 8.05723 8.34948 8.41852 9.27981 9.88818 10.55179 11.43812 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006782 B = 0.006366 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4127.665622 B = 4397.486369 C = 7556.450934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.010 4.010 3 C -0.153 4.153 4 C -0.023 4.023 5 C -0.186 4.186 6 C -0.028 4.028 7 C 0.603 3.397 8 O -0.538 6.538 9 N -0.590 5.590 10 C 0.114 3.886 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.084 4.084 14 C -0.134 4.134 15 C 0.154 3.846 16 N -0.599 5.599 17 C -0.217 4.217 18 H 0.072 0.928 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.156 3.844 26 C 0.092 3.908 27 N -0.305 5.305 28 O 0.129 5.871 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.176 0.824 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.015 0.985 47 H 0.251 0.749 48 H 0.020 0.980 49 H 0.013 0.987 50 H 0.139 0.861 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -11.156 -6.614 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 C -0.211 4.211 4 C -0.087 4.087 5 C -0.209 4.209 6 C -0.186 4.186 7 C 0.390 3.610 8 O -0.414 6.414 9 N -0.322 5.322 10 C -0.009 4.009 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.085 4.085 14 C -0.173 4.173 15 C 0.029 3.971 16 N -0.325 5.325 17 C -0.346 4.346 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.030 3.970 26 C -0.030 4.030 27 N -0.006 5.006 28 O 0.055 5.945 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.193 0.807 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.033 0.967 47 H 0.061 0.939 48 H 0.038 0.962 49 H 0.030 0.970 50 H 0.155 0.845 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.058 -11.167 -5.677 13.510 hybrid contribution 0.776 0.466 -0.981 1.335 sum -4.283 -10.700 -6.658 13.311 Atomic orbital electron populations 1.21896 0.93200 1.02529 1.03157 1.19796 0.96662 0.96366 0.90147 1.21911 1.02065 0.93904 1.03198 1.24438 1.00256 0.96554 0.87421 1.22292 1.03251 0.99030 0.96304 1.23343 1.03967 0.98505 0.92807 1.16956 0.79209 0.83128 0.81740 1.90733 1.51006 1.38187 1.61513 1.47986 1.47826 1.30916 1.05472 1.21632 0.92252 0.89815 0.97151 1.21961 0.97788 0.99354 0.98226 1.21428 0.98968 0.96497 0.97122 1.21252 0.95983 0.95051 0.96261 1.22992 0.98858 0.97878 0.97583 1.21933 0.88084 0.94710 0.92326 1.44491 1.29182 1.00609 1.58227 1.19010 1.07228 0.84318 1.24015 0.90989 1.24715 0.97757 0.97347 1.00656 1.69801 1.21595 1.22693 1.42760 0.86158 0.78389 0.83055 0.78445 1.21730 1.21666 1.20866 1.21147 0.94562 0.85776 0.95549 1.22505 0.94580 0.91840 0.94088 1.73967 1.09186 1.01747 1.15709 1.84851 1.53318 1.42977 1.13335 0.91494 0.91360 0.92211 0.88024 0.91822 0.91438 0.91211 0.80666 0.91405 0.89160 0.90840 0.91159 0.92108 0.91380 0.92334 0.91792 0.87836 0.96692 0.93866 0.96214 0.96963 0.84471 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.18 37.16 0.34 -0.94 16 2 C -0.01 -0.10 3.34 -91.77 -0.31 -0.41 16 3 C -0.15 -1.65 9.18 37.16 0.34 -1.31 16 4 C -0.02 -0.33 5.98 -35.35 -0.21 -0.54 16 5 C -0.19 -2.75 10.91 -39.07 -0.43 -3.18 16 6 C -0.03 -0.49 6.95 -82.53 -0.57 -1.07 16 7 C 0.60 10.93 7.72 -12.11 -0.09 10.84 16 8 O -0.54 -10.38 16.39 5.37 0.09 -10.29 16 9 N -0.59 -9.78 2.61 -174.34 -0.45 -10.24 16 10 C 0.11 1.55 6.40 -3.71 -0.02 1.53 16 11 C -0.14 -1.77 5.92 -26.55 -0.16 -1.93 16 12 C -0.10 -1.47 4.52 -27.03 -0.12 -1.59 16 13 C -0.08 -1.49 0.54 -154.31 -0.08 -1.58 16 14 C -0.13 -2.54 5.99 -24.88 -0.15 -2.69 16 15 C 0.15 3.74 5.58 -2.43 -0.01 3.73 16 16 N -0.60 -15.45 3.40 -170.23 -0.58 -16.03 16 17 C -0.22 -6.13 10.28 -15.06 -0.15 -6.29 16 18 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -26.68 10.09 55.49 0.56 -26.12 16 21 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.16 3.40 5.42 -3.32 -0.02 3.39 16 26 C 0.09 1.58 4.73 -4.27 -0.02 1.56 16 27 N -0.30 -5.66 8.51 33.30 0.28 -5.38 16 28 O 0.13 2.21 11.18 17.22 0.19 2.40 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.26 7.03 -51.93 -0.36 0.89 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.05 7.28 -51.93 -0.38 0.67 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 43 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 44 H 0.06 1.19 8.02 -51.93 -0.42 0.77 16 45 H 0.10 2.83 5.88 -51.93 -0.31 2.53 16 46 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.44 7.61 -51.93 -0.40 0.05 16 49 H 0.01 0.29 7.54 -51.93 -0.39 -0.10 16 50 H 0.14 2.68 3.35 -72.46 -0.24 2.44 16 51 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -32.32 395.56 -9.09 -41.42 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.36 Total: 1.87 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.77 Total: -0.83 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.19 Total: -57.76 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.28 Total: -7.89 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.32 -9.09 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054172050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.582 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds