Wall clock time and date at job start Wed Apr 1 2020 05:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 C 1.50702 * 109.47630 * 120.00515 * 2 1 3 5 5 C 1.35312 * 126.66891 * 119.99667 * 4 2 1 6 6 C 1.42274 * 103.92102 * 179.73989 * 5 4 2 7 7 C 1.48327 * 126.93722 * 180.26368 * 6 5 4 8 8 O 1.21493 * 120.00220 * 353.64199 * 7 6 5 9 9 N 1.34783 * 119.99850 * 173.64889 * 7 6 5 10 10 C 1.46934 * 120.70022 * 184.32264 * 9 7 6 11 11 C 1.53186 * 108.93139 * 125.84135 * 10 9 7 12 12 C 1.53169 * 109.27616 * 55.21485 * 11 10 9 13 13 C 1.52243 * 109.64832 * 299.82750 * 12 11 10 14 14 C 1.54480 * 110.29445 * 182.00310 * 13 12 11 15 15 C 1.55025 * 101.52828 * 153.34394 * 14 13 12 16 16 N 1.47487 * 104.90694 * 323.65316 * 15 14 13 17 17 C 1.36934 * 125.66222 * 204.03312 * 16 15 14 18 18 H 1.08001 * 119.99994 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00101 * 359.97438 * 17 16 15 20 20 N 1.31622 * 120.00111 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00194 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46941 * 89.99940 * 21 19 17 23 23 H 1.48501 * 109.47517 * 210.00087 * 21 19 17 24 24 H 1.48500 * 109.47025 * 330.00153 * 21 19 17 25 25 C 1.47183 * 108.67380 * 24.01552 * 16 15 14 26 26 C 1.47073 * 120.70097 * 4.03907 * 9 7 6 27 27 N 1.30987 * 106.12294 * 0.25930 * 6 5 4 28 28 O 1.20905 * 111.44196 * 0.02562 * 27 6 5 29 29 H 1.09001 * 109.46595 * 299.99395 * 1 2 3 30 30 H 1.08998 * 109.47328 * 59.99791 * 1 2 3 31 31 H 1.08998 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46856 * 240.00123 * 2 1 3 33 33 H 1.08999 * 109.47437 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47049 * 300.00380 * 3 2 1 35 35 H 1.09000 * 109.47014 * 60.00220 * 3 2 1 36 36 H 1.08000 * 128.03675 * 359.97438 * 5 4 2 37 37 H 1.08998 * 109.56193 * 245.67555 * 10 9 7 38 38 H 1.08998 * 109.56470 * 5.89775 * 10 9 7 39 39 H 1.09001 * 109.50301 * 175.15125 * 11 10 9 40 40 H 1.08997 * 109.50041 * 295.27288 * 11 10 9 41 41 H 1.09004 * 109.44333 * 59.87470 * 12 11 10 42 42 H 1.08998 * 109.44202 * 179.80643 * 12 11 10 43 43 H 1.08999 * 111.01025 * 271.40784 * 14 13 12 44 44 H 1.09000 * 111.01065 * 35.27911 * 14 13 12 45 45 H 1.09005 * 110.34822 * 204.80126 * 15 14 13 46 46 H 1.08996 * 110.44393 * 82.56054 * 15 14 13 47 47 H 0.96999 * 119.99957 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.91142 * 239.09400 * 25 16 15 49 49 H 1.09006 * 109.90743 * 117.82790 * 25 16 15 50 50 H 1.08995 * 109.58277 * 352.26008 * 26 9 7 51 51 H 1.09000 * 109.58088 * 112.65911 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8134 -1.8150 1.2634 6 6 2.9967 -2.0632 2.6523 7 6 3.7831 -3.1613 3.2653 8 8 4.2587 -4.0325 2.5646 9 7 3.9700 -3.1927 4.5997 10 6 4.8240 -4.2188 5.2137 11 6 5.8881 -3.5302 6.0740 12 6 5.2009 -2.6121 7.0894 13 6 4.3854 -1.5566 6.3555 14 6 3.7258 -0.5913 7.3651 15 6 3.5807 0.6960 6.5136 16 7 4.7873 0.7283 5.6661 17 6 5.3387 1.8489 5.1047 18 1 6.2280 1.7669 4.4973 19 6 4.7549 3.0904 5.3163 20 7 3.6715 3.1905 6.0570 21 14 5.5076 4.6192 4.5511 22 1 4.9131 4.8451 3.2092 23 1 5.2332 5.7932 5.4181 24 1 6.9751 4.4347 4.4176 25 6 5.3004 -0.6439 5.5243 26 6 3.3285 -2.1969 5.4715 27 7 2.3308 -1.1262 3.2802 28 8 1.7895 -0.3732 2.5045 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.2091 -2.3754 0.4292 37 1 4.2164 -4.8729 5.8390 38 1 5.3076 -4.8061 4.4331 39 1 6.4727 -4.2836 6.6019 40 1 6.5455 -2.9396 5.4360 41 1 4.5412 -3.2032 7.7247 42 1 5.9556 -2.1232 7.7054 43 1 2.7511 -0.9628 7.6814 44 1 4.3748 -0.4208 8.2241 45 1 3.5462 1.5747 7.1578 46 1 2.6844 0.6445 5.8955 47 1 3.2633 4.0579 6.2046 48 1 6.3216 -0.6991 5.9014 49 1 5.2720 -0.9443 4.4768 50 1 2.8515 -1.4303 4.8610 51 1 2.5814 -2.6860 6.0966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054172050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:53 Heat of formation + Delta-G solvation = 41.191716 kcal Electronic energy + Delta-G solvation = -33202.871297 eV Core-core repulsion = 29105.810724 eV Total energy + Delta-G solvation = -4097.060573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.15018 -41.70671 -39.88023 -37.27963 -37.01828 -35.27927 -34.71083 -33.50214 -31.97232 -31.59334 -29.98388 -28.06439 -27.53732 -27.41382 -25.76970 -25.08770 -24.26173 -23.38634 -22.49251 -21.75751 -20.46613 -19.40261 -18.91408 -18.80139 -18.38396 -17.89258 -17.15251 -16.87623 -16.54723 -16.11094 -15.93663 -15.71512 -15.45986 -15.09930 -14.85537 -14.55122 -14.39418 -14.22927 -14.15363 -14.02519 -13.86499 -13.63544 -13.29786 -13.07377 -13.04801 -12.82701 -12.76608 -12.46727 -12.31081 -12.20533 -12.13182 -12.00309 -11.96686 -11.87321 -11.71278 -11.64340 -11.56570 -11.44578 -11.16963 -10.90851 -10.72700 -10.47507 -9.79213 -8.86154 -7.76245 -5.19568 0.03310 0.63107 1.41935 1.43339 1.52121 1.61520 1.97036 2.02659 2.47408 2.77307 3.26229 3.31270 3.58750 3.70056 3.74061 3.81702 3.89018 3.96378 3.98546 4.04836 4.11340 4.15333 4.28299 4.30925 4.44222 4.50585 4.57070 4.68184 4.76314 4.77385 4.77960 4.78685 4.84718 4.89762 4.91149 4.95557 5.01665 5.08302 5.10014 5.10779 5.16732 5.33688 5.34850 5.37667 5.38942 5.42896 5.54835 5.69547 5.83922 6.06924 6.32402 6.72889 7.08306 7.12468 7.79334 8.44474 9.24750 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006782 B = 0.006366 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4127.665622 B = 4397.486369 C = 7556.450934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.008 4.008 3 C -0.153 4.153 4 C -0.014 4.014 5 C -0.194 4.194 6 C -0.048 4.048 7 C 0.596 3.404 8 O -0.557 6.557 9 N -0.588 5.588 10 C 0.109 3.891 11 C -0.128 4.128 12 C -0.097 4.097 13 C -0.073 4.073 14 C -0.119 4.119 15 C 0.160 3.840 16 N -0.616 5.616 17 C -0.238 4.238 18 H 0.065 0.935 19 C -0.058 4.058 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.286 1.286 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.160 3.840 26 C 0.090 3.910 27 N -0.331 5.331 28 O 0.107 5.893 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.134 0.866 33 H 0.047 0.953 34 H 0.098 0.902 35 H 0.043 0.957 36 H 0.198 0.802 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.070 0.930 46 H -0.013 1.013 47 H 0.247 0.753 48 H 0.016 0.984 49 H -0.010 1.010 50 H 0.117 0.883 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -12.686 -6.869 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.027 4.027 3 C -0.210 4.210 4 C -0.077 4.077 5 C -0.216 4.216 6 C -0.206 4.206 7 C 0.382 3.618 8 O -0.435 6.435 9 N -0.318 5.318 10 C -0.012 4.012 11 C -0.166 4.166 12 C -0.135 4.135 13 C -0.074 4.074 14 C -0.158 4.158 15 C 0.036 3.964 16 N -0.342 5.342 17 C -0.367 4.367 18 H 0.083 0.917 19 C -0.251 4.251 20 N -0.590 5.590 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.214 1.214 24 H -0.200 1.200 25 C 0.035 3.965 26 C -0.032 4.032 27 N -0.034 5.034 28 O 0.036 5.964 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.152 0.848 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.215 0.785 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.005 0.995 47 H 0.057 0.943 48 H 0.034 0.966 49 H 0.008 0.992 50 H 0.134 0.866 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.050 -12.711 -5.917 14.902 hybrid contribution 0.774 0.981 -0.960 1.576 sum -4.276 -11.730 -6.877 14.253 Atomic orbital electron populations 1.21893 0.91785 1.03101 1.03657 1.20090 0.97773 0.95633 0.89202 1.21917 1.01081 0.94593 1.03451 1.25224 0.99049 0.96137 0.87264 1.22633 1.03541 0.99618 0.95830 1.23666 1.04183 0.98527 0.94226 1.17117 0.79254 0.83073 0.82308 1.90703 1.52018 1.38879 1.61943 1.48093 1.47710 1.31064 1.04982 1.21905 0.92474 0.89414 0.97426 1.21935 0.97379 0.99651 0.97632 1.21423 0.99056 0.95772 0.97245 1.21195 0.95617 0.95129 0.95456 1.22855 1.00770 0.95195 0.96998 1.21680 0.86653 0.96329 0.91788 1.44735 1.29562 1.01585 1.58324 1.19259 1.07355 0.85747 1.24384 0.91674 1.25484 0.98323 0.99963 1.01320 1.70047 1.22495 1.22915 1.43527 0.85200 0.77950 0.79400 0.77545 1.21341 1.21429 1.19993 1.21196 0.95268 0.84928 0.95124 1.22442 0.94787 0.91935 0.94037 1.74024 1.10361 1.02459 1.16595 1.84800 1.53618 1.43251 1.14781 0.93140 0.88719 0.91616 0.84819 0.93339 0.88337 0.93781 0.78453 0.88349 0.89543 0.87114 0.93735 0.88939 0.91330 0.89501 0.91018 0.91201 0.99503 0.94312 0.96638 0.99169 0.86626 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.18 71.98 0.66 -1.62 16 2 C -0.01 -0.15 3.34 -11.54 -0.04 -0.19 16 3 C -0.15 -3.22 9.18 71.98 0.66 -2.56 16 4 C -0.01 -0.38 5.98 25.01 0.15 -0.23 16 5 C -0.19 -5.75 10.91 22.60 0.25 -5.51 16 6 C -0.05 -1.75 6.95 42.96 0.30 -1.45 16 7 C 0.60 21.73 7.72 86.93 0.67 22.40 16 8 O -0.56 -21.49 16.39 -3.69 -0.06 -21.55 16 9 N -0.59 -18.94 2.61 -823.79 -2.15 -21.09 16 10 C 0.11 2.69 6.40 86.36 0.55 3.25 16 11 C -0.13 -3.00 5.92 30.71 0.18 -2.81 16 12 C -0.10 -2.48 4.52 30.40 0.14 -2.34 16 13 C -0.07 -2.50 0.54 -52.06 -0.03 -2.53 16 14 C -0.12 -4.40 5.99 31.79 0.19 -4.21 16 15 C 0.16 8.05 5.58 86.88 0.48 8.53 16 16 N -0.62 -32.94 3.40 -692.47 -2.36 -35.30 16 17 C -0.24 -13.95 10.28 84.03 0.86 -13.09 16 18 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 19 C -0.06 -3.35 5.49 84.86 0.47 -2.89 16 20 N -0.94 -56.52 10.09 21.65 0.22 -56.30 16 21 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 25 C 0.16 7.16 5.42 86.47 0.47 7.62 16 26 C 0.09 3.04 4.73 85.92 0.41 3.45 16 27 N -0.33 -12.85 8.51 -49.51 -0.42 -13.27 16 28 O 0.11 3.87 11.18 71.81 0.80 4.67 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.13 1.71 8.12 -2.39 -0.02 1.69 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 2.25 7.03 -2.39 -0.02 2.23 16 39 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 1.28 7.28 -2.39 -0.02 1.26 16 41 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.07 1.78 8.11 -2.39 -0.02 1.77 16 43 H 0.09 2.73 7.97 -2.39 -0.02 2.71 16 44 H 0.07 2.55 8.02 -2.39 -0.02 2.53 16 45 H 0.07 3.99 5.88 -2.38 -0.01 3.97 16 46 H -0.01 -0.71 7.91 -2.39 -0.02 -0.73 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.02 0.71 7.61 -2.39 -0.02 0.69 16 49 H -0.01 -0.47 7.54 -2.38 -0.02 -0.49 16 50 H 0.12 4.62 3.35 -42.93 -0.14 4.48 16 51 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -74.64 395.56 5.22 -69.42 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.79 Total: 18.86 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.37 Total: 5.82 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -4.70 Total: -125.96 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.74 Total: -16.88 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -74.64 5.22 -69.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054172050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.610 kcal (2) G-P(sol) polarization free energy of solvation -74.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds