Wall clock time and date at job start Wed Apr 1 2020 05:12:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52999 * 109.47232 * 2 1
4 4 C 1.50703 * 109.46959 * 120.00038 * 2 1 3
5 5 C 1.41262 * 126.70547 * 274.99676 * 4 2 1
6 6 C 1.36822 * 103.84395 * 180.02562 * 5 4 2
7 7 C 1.47515 * 126.94099 * 179.97438 * 6 5 4
8 8 O 1.21583 * 120.00282 * 6.48804 * 7 6 5
9 9 N 1.34779 * 119.99829 * 186.49384 * 7 6 5
10 10 C 1.46951 * 120.71755 * 175.68730 * 9 7 6
11 11 C 1.53185 * 108.89537 * 234.31092 * 10 9 7
12 12 C 1.53180 * 109.27932 * 304.61058 * 11 10 9
13 13 C 1.52065 * 109.73844 * 59.92922 * 12 11 10
14 14 C 1.54361 * 110.58999 * 177.70696 * 13 12 11
15 15 C 1.54463 * 102.87030 * 207.23720 * 14 13 12
16 16 N 1.47082 * 107.29386 * 21.47348 * 15 14 13
17 17 C 1.36939 * 125.62424 * 180.71830 * 16 15 14
18 18 H 1.08007 * 119.99721 * 180.02562 * 17 16 15
19 19 C 1.38814 * 120.00168 * 0.02562 * 17 16 15
20 20 N 1.31617 * 119.99718 * 0.02562 * 19 17 16
21 21 Si 1.86794 * 119.99910 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.47366 * 0.02562 * 21 19 17
23 23 H 1.48503 * 109.47103 * 120.00099 * 21 19 17
24 24 H 1.48500 * 109.47354 * 239.99905 * 21 19 17
25 25 C 1.47583 * 108.74807 * 0.98293 * 16 15 14
26 26 C 1.47097 * 120.71758 * 355.66505 * 9 7 6
27 27 O 1.34635 * 106.11564 * 0.23713 * 6 5 4
28 28 N 1.20886 * 111.46557 * 359.57469 * 27 6 5
29 29 H 1.09004 * 109.47034 * 299.99974 * 1 2 3
30 30 H 1.09006 * 109.47221 * 59.99490 * 1 2 3
31 31 H 1.08995 * 109.47493 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47272 * 240.00489 * 2 1 3
33 33 H 1.09005 * 109.47406 * 179.97438 * 3 2 1
34 34 H 1.08993 * 109.47693 * 300.00200 * 3 2 1
35 35 H 1.09004 * 109.47090 * 60.00060 * 3 2 1
36 36 H 1.07998 * 128.07897 * 0.03698 * 5 4 2
37 37 H 1.08993 * 109.56411 * 114.48475 * 10 9 7
38 38 H 1.09003 * 109.66127 * 354.19489 * 10 9 7
39 39 H 1.09002 * 109.50250 * 184.66767 * 11 10 9
40 40 H 1.09008 * 109.50565 * 64.55074 * 11 10 9
41 41 H 1.08994 * 109.42666 * 299.84281 * 12 11 10
42 42 H 1.09002 * 109.38551 * 179.97438 * 12 11 10
43 43 H 1.09000 * 110.73728 * 88.88971 * 14 13 12
44 44 H 1.08999 * 110.73313 * 325.58715 * 14 13 12
45 45 H 1.09001 * 109.87757 * 262.05011 * 15 14 13
46 46 H 1.08996 * 110.00201 * 140.96527 * 15 14 13
47 47 H 0.97003 * 119.99385 * 180.02562 * 20 19 17
48 48 H 1.09003 * 110.37317 * 95.53911 * 25 16 15
49 49 H 1.08999 * 110.37931 * 217.88534 * 25 16 15
50 50 H 1.08996 * 109.56724 * 7.96861 * 26 9 7
51 51 H 1.09007 * 109.56282 * 247.62292 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0323 -0.7104 1.2305
5 6 2.2207 -0.1478 2.5125
6 6 2.6851 -1.1929 3.2636
7 6 3.0499 -1.1644 4.6926
8 8 2.8387 -0.1664 5.3542
9 7 3.6174 -2.2447 5.2649
10 6 4.0730 -2.2021 6.6614
11 6 5.5449 -2.6229 6.7160
12 6 5.7021 -3.9988 6.0614
13 6 5.2467 -3.9331 4.6121
14 6 5.4505 -5.2960 3.9166
15 6 5.6350 -4.9018 2.4346
16 7 6.0533 -3.4921 2.4059
17 6 6.3076 -2.7583 1.2780
18 1 6.6111 -1.7252 1.3629
19 6 6.1752 -3.3421 0.0256
20 7 5.8049 -4.6009 -0.0778
21 14 6.5213 -2.3410 -1.5129
22 1 6.9175 -0.9625 -1.1278
23 1 7.6231 -2.9763 -2.2795
24 1 5.2990 -2.2882 -2.3546
25 6 6.1601 -3.0006 3.7934
26 6 3.7936 -3.4919 4.5053
27 8 2.7475 -2.2511 2.4335
28 7 2.3778 -1.9618 1.3195
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 3.1301 1.4425 0.0005
34 1 1.6767 1.9564 -0.8899
35 1 1.6767 1.9563 0.8900
36 1 2.0401 0.8696 2.8265
37 1 3.4747 -2.8875 7.2616
38 1 3.9681 -1.1893 7.0506
39 1 5.8701 -2.6749 7.7551
40 1 6.1522 -1.8934 6.1801
41 1 5.0958 -4.7276 6.5993
42 1 6.7491 -4.2998 6.0990
43 1 4.5713 -5.9281 4.0412
44 1 6.3421 -5.7940 4.2975
45 1 4.6927 -5.0198 1.8996
46 1 6.4022 -5.5254 1.9757
47 1 5.7127 -5.0090 -0.9530
48 1 7.1896 -3.0743 4.1439
49 1 5.8085 -1.9710 3.8595
50 1 3.5398 -3.3212 3.4592
51 1 3.1460 -4.2654 4.9183
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054209308.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:12:48
Heat of formation + Delta-G solvation = 39.258129 kcal
Electronic energy + Delta-G solvation = -33649.464829 eV
Core-core repulsion = 29552.320410 eV
Total energy + Delta-G solvation = -4097.144420 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-46.01544 -41.61622 -39.87130 -37.61760 -37.18075 -34.76047 -33.94309 -33.45350
-32.53501 -31.68953 -29.98415 -28.14694 -27.50262 -27.10132 -25.67752 -25.08522
-24.48872 -22.98134 -22.37638 -21.68211 -20.62432 -19.70784 -18.86220 -18.71517
-18.42203 -17.61852 -17.27058 -16.81987 -16.46747 -15.91054 -15.77038 -15.67613
-15.35814 -15.24788 -14.86035 -14.62912 -14.43528 -14.19326 -14.00550 -13.93688
-13.71084 -13.51541 -13.26148 -13.07967 -12.93507 -12.83467 -12.68877 -12.58154
-12.33576 -12.30184 -12.13012 -12.03851 -11.86850 -11.82813 -11.78606 -11.65405
-11.38430 -11.17188 -11.08389 -10.96186 -10.76159 -10.66595 -9.73136 -8.81381
-7.82636 -5.13653 -0.21116 1.10957 1.35191 1.36202 1.44279 1.50365
1.84962 2.08253 2.45910 2.99771 3.20420 3.36430 3.58870 3.73540
3.80205 3.85358 3.92837 4.00813 4.08253 4.10630 4.13844 4.21306
4.23408 4.36801 4.43101 4.49212 4.65465 4.74267 4.74883 4.81018
4.83907 4.85799 4.88792 4.89657 4.93712 4.97043 5.02882 5.11708
5.15546 5.17626 5.22318 5.26614 5.29626 5.38897 5.43393 5.49654
5.57077 5.76285 5.85879 6.06375 6.24319 6.72851 7.15506 7.23202
7.83404 8.46930 9.27094
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.007974 B = 0.006445 C = 0.004021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3510.782129 B = 4343.115861 C = 6961.312420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.023 4.023
3 C -0.140 4.140
4 C 0.008 3.992
5 C -0.145 4.145
6 C -0.106 4.106
7 C 0.607 3.393
8 O -0.546 6.546
9 N -0.586 5.586
10 C 0.109 3.891
11 C -0.129 4.129
12 C -0.096 4.096
13 C -0.073 4.073
14 C -0.119 4.119
15 C 0.187 3.813
16 N -0.615 5.615
17 C -0.224 4.224
18 H 0.061 0.939
19 C -0.049 4.049
20 N -0.938 5.938
21 Si 0.950 3.050
22 H -0.274 1.274
23 H -0.289 1.289
24 H -0.295 1.295
25 C 0.152 3.848
26 C 0.108 3.892
27 O 0.127 5.873
28 N -0.367 5.367
29 H 0.070 0.930
30 H 0.089 0.911
31 H 0.043 0.957
32 H 0.070 0.930
33 H 0.041 0.959
34 H 0.089 0.911
35 H 0.077 0.923
36 H 0.201 0.799
37 H 0.102 0.898
38 H 0.088 0.912
39 H 0.111 0.889
40 H 0.047 0.953
41 H 0.094 0.906
42 H 0.073 0.927
43 H 0.087 0.913
44 H 0.079 0.921
45 H 0.010 0.990
46 H 0.003 0.997
47 H 0.243 0.757
48 H 0.018 0.982
49 H 0.016 0.984
50 H 0.088 0.912
51 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.569 5.443 12.571 16.158
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.042 4.042
3 C -0.198 4.198
4 C -0.149 4.149
5 C -0.167 4.167
6 C -0.172 4.172
7 C 0.393 3.607
8 O -0.425 6.425
9 N -0.317 5.317
10 C -0.012 4.012
11 C -0.167 4.167
12 C -0.134 4.134
13 C -0.074 4.074
14 C -0.157 4.157
15 C 0.062 3.938
16 N -0.341 5.341
17 C -0.354 4.354
18 H 0.079 0.921
19 C -0.243 4.243
20 N -0.587 5.587
21 Si 0.780 3.220
22 H -0.198 1.198
23 H -0.216 1.216
24 H -0.223 1.223
25 C 0.027 3.973
26 C -0.014 4.014
27 O 0.056 5.944
28 N -0.069 5.069
29 H 0.089 0.911
30 H 0.108 0.892
31 H 0.062 0.938
32 H 0.088 0.912
33 H 0.060 0.940
34 H 0.108 0.892
35 H 0.096 0.904
36 H 0.218 0.782
37 H 0.120 0.880
38 H 0.106 0.894
39 H 0.129 0.871
40 H 0.066 0.934
41 H 0.112 0.888
42 H 0.092 0.908
43 H 0.106 0.894
44 H 0.098 0.902
45 H 0.028 0.972
46 H 0.021 0.979
47 H 0.053 0.947
48 H 0.036 0.964
49 H 0.035 0.965
50 H 0.105 0.895
51 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -8.633 4.934 11.861 15.478
hybrid contribution 0.572 0.894 -1.415 1.769
sum -8.061 5.828 10.446 14.425
Atomic orbital electron populations
1.21774 0.91325 1.02018 1.03980 1.19720 0.97723 0.96162 0.90593
1.21842 1.00609 0.93001 1.04324 1.24089 1.02368 0.90053 0.98418
1.22971 1.01174 1.01483 0.91081 1.24454 1.08221 0.89716 0.94784
1.16654 0.78032 0.83494 0.82531 1.90777 1.56863 1.32941 1.61929
1.48126 1.57420 1.11700 1.14413 1.21963 0.95910 1.04026 0.79273
1.21948 0.94919 0.96934 1.02872 1.21357 1.02464 0.97783 0.91750
1.21318 0.93942 0.95563 0.96621 1.22726 1.02548 0.95738 0.94699
1.20919 0.96347 0.84103 0.92457 1.44647 1.79733 1.09187 1.00503
1.19074 1.37997 0.93523 0.84793 0.92140 1.25269 1.02553 0.97132
0.99347 1.70141 1.54613 1.12048 1.21877 0.85426 0.76936 0.78488
0.81177 1.19837 1.21560 1.22289 1.21521 0.96016 0.95291 0.84498
1.22142 0.96665 0.85254 0.97344 1.85193 1.61465 1.34060 1.13691
1.73802 1.13303 1.18923 1.00850 0.91065 0.89229 0.93770 0.91195
0.93959 0.89211 0.90436 0.78229 0.88004 0.89398 0.87108 0.93432
0.88758 0.90805 0.89440 0.90208 0.97213 0.97913 0.94749 0.96386
0.96532 0.89453 0.88258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.81 9.18 71.98 0.66 -2.15 16
2 C -0.02 -0.62 3.38 -11.54 -0.04 -0.66 16
3 C -0.14 -3.06 8.81 71.98 0.63 -2.43 16
4 C 0.01 0.30 6.20 43.56 0.27 0.57 16
5 C -0.15 -4.71 10.13 22.68 0.23 -4.48 16
6 C -0.11 -3.86 6.99 24.39 0.17 -3.69 16
7 C 0.61 20.50 7.70 86.69 0.67 21.17 16
8 O -0.55 -19.46 16.36 -3.98 -0.07 -19.53 16
9 N -0.59 -16.82 2.60 -824.05 -2.15 -18.96 16
10 C 0.11 2.27 6.40 86.36 0.55 2.82 16
11 C -0.13 -2.46 5.93 30.72 0.18 -2.27 16
12 C -0.10 -1.98 4.64 30.35 0.14 -1.84 16
13 C -0.07 -2.20 0.55 -51.92 -0.03 -2.23 16
14 C -0.12 -3.92 5.89 31.55 0.19 -3.74 16
15 C 0.19 9.01 5.11 86.77 0.44 9.45 16
16 N -0.61 -31.27 3.33 -692.79 -2.31 -33.58 16
17 C -0.22 -12.92 10.28 84.03 0.86 -12.06 16
18 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16
19 C -0.05 -2.88 5.49 84.86 0.47 -2.42 16
20 N -0.94 -57.32 10.31 21.65 0.22 -57.10 16
21 Si 0.95 48.13 29.55 68.60 2.03 50.15 16
22 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16
23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16
24 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16
25 C 0.15 6.15 5.20 86.54 0.45 6.60 16
26 C 0.11 3.29 4.89 86.01 0.42 3.72 16
27 O 0.13 5.26 7.76 65.89 0.51 5.77 16
28 N -0.37 -15.76 12.04 -48.86 -0.59 -16.35 16
29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16
30 H 0.09 1.43 8.14 -2.38 -0.02 1.42 16
31 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16
32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16
33 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16
34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
35 H 0.08 1.42 7.48 -2.38 -0.02 1.40 16
36 H 0.20 5.20 7.65 -2.91 -0.02 5.17 16
37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
38 H 0.09 1.95 7.03 -2.39 -0.02 1.94 16
39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16
40 H 0.05 1.14 7.40 -2.38 -0.02 1.13 16
41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
42 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16
43 H 0.09 2.48 7.99 -2.39 -0.02 2.46 16
44 H 0.08 2.39 8.00 -2.39 -0.02 2.37 16
45 H 0.01 0.53 7.40 -2.39 -0.02 0.51 16
46 H 0.00 0.15 7.48 -2.39 -0.02 0.13 16
47 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16
48 H 0.02 0.74 7.97 -2.39 -0.02 0.72 16
49 H 0.02 0.71 7.65 -2.39 -0.02 0.69 16
50 H 0.09 3.39 3.61 -43.79 -0.16 3.23 16
51 H 0.10 2.44 8.12 -2.38 -0.02 2.42 16
Total: -1.00 -74.82 395.33 4.69 -70.13
By element:
Atomic # 1 Polarization: 12.33 SS G_CDS: 0.77 Total: 13.10 kcal
Atomic # 6 Polarization: 0.09 SS G_CDS: 6.27 Total: 6.35 kcal
Atomic # 7 Polarization: -121.17 SS G_CDS: -4.82 Total: -125.99 kcal
Atomic # 8 Polarization: -14.20 SS G_CDS: 0.45 Total: -13.75 kcal
Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.15 kcal
Total: -74.82 4.69 -70.13 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054209308.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.387 kcal
(2) G-P(sol) polarization free energy of solvation -74.819 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.258 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds