Wall clock time and date at job start Wed Apr 1 2020 05:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 C 1.50703 * 109.46959 * 120.00038 * 2 1 3 5 5 C 1.41262 * 126.70547 * 274.99676 * 4 2 1 6 6 C 1.36822 * 103.84395 * 180.02562 * 5 4 2 7 7 C 1.47515 * 126.94099 * 179.97438 * 6 5 4 8 8 O 1.21583 * 120.00282 * 6.48804 * 7 6 5 9 9 N 1.34779 * 119.99829 * 186.49384 * 7 6 5 10 10 C 1.46951 * 120.71755 * 175.68730 * 9 7 6 11 11 C 1.53185 * 108.89537 * 234.31092 * 10 9 7 12 12 C 1.53180 * 109.27932 * 304.61058 * 11 10 9 13 13 C 1.52065 * 109.73844 * 59.92922 * 12 11 10 14 14 C 1.54361 * 110.58999 * 177.70696 * 13 12 11 15 15 C 1.54463 * 102.87030 * 207.23720 * 14 13 12 16 16 N 1.47082 * 107.29386 * 21.47348 * 15 14 13 17 17 C 1.36939 * 125.62424 * 180.71830 * 16 15 14 18 18 H 1.08007 * 119.99721 * 180.02562 * 17 16 15 19 19 C 1.38814 * 120.00168 * 0.02562 * 17 16 15 20 20 N 1.31617 * 119.99718 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99910 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47366 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47103 * 120.00099 * 21 19 17 24 24 H 1.48500 * 109.47354 * 239.99905 * 21 19 17 25 25 C 1.47583 * 108.74807 * 0.98293 * 16 15 14 26 26 C 1.47097 * 120.71758 * 355.66505 * 9 7 6 27 27 O 1.34635 * 106.11564 * 0.23713 * 6 5 4 28 28 N 1.20886 * 111.46557 * 359.57469 * 27 6 5 29 29 H 1.09004 * 109.47034 * 299.99974 * 1 2 3 30 30 H 1.09006 * 109.47221 * 59.99490 * 1 2 3 31 31 H 1.08995 * 109.47493 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47272 * 240.00489 * 2 1 3 33 33 H 1.09005 * 109.47406 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47693 * 300.00200 * 3 2 1 35 35 H 1.09004 * 109.47090 * 60.00060 * 3 2 1 36 36 H 1.07998 * 128.07897 * 0.03698 * 5 4 2 37 37 H 1.08993 * 109.56411 * 114.48475 * 10 9 7 38 38 H 1.09003 * 109.66127 * 354.19489 * 10 9 7 39 39 H 1.09002 * 109.50250 * 184.66767 * 11 10 9 40 40 H 1.09008 * 109.50565 * 64.55074 * 11 10 9 41 41 H 1.08994 * 109.42666 * 299.84281 * 12 11 10 42 42 H 1.09002 * 109.38551 * 179.97438 * 12 11 10 43 43 H 1.09000 * 110.73728 * 88.88971 * 14 13 12 44 44 H 1.08999 * 110.73313 * 325.58715 * 14 13 12 45 45 H 1.09001 * 109.87757 * 262.05011 * 15 14 13 46 46 H 1.08996 * 110.00201 * 140.96527 * 15 14 13 47 47 H 0.97003 * 119.99385 * 180.02562 * 20 19 17 48 48 H 1.09003 * 110.37317 * 95.53911 * 25 16 15 49 49 H 1.08999 * 110.37931 * 217.88534 * 25 16 15 50 50 H 1.08996 * 109.56724 * 7.96861 * 26 9 7 51 51 H 1.09007 * 109.56282 * 247.62292 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2207 -0.1478 2.5125 6 6 2.6851 -1.1929 3.2636 7 6 3.0499 -1.1644 4.6926 8 8 2.8387 -0.1664 5.3542 9 7 3.6174 -2.2447 5.2649 10 6 4.0730 -2.2021 6.6614 11 6 5.5449 -2.6229 6.7160 12 6 5.7021 -3.9988 6.0614 13 6 5.2467 -3.9331 4.6121 14 6 5.4505 -5.2960 3.9166 15 6 5.6350 -4.9018 2.4346 16 7 6.0533 -3.4921 2.4059 17 6 6.3076 -2.7583 1.2780 18 1 6.6111 -1.7252 1.3629 19 6 6.1752 -3.3421 0.0256 20 7 5.8049 -4.6009 -0.0778 21 14 6.5213 -2.3410 -1.5129 22 1 6.9175 -0.9625 -1.1278 23 1 7.6231 -2.9763 -2.2795 24 1 5.2990 -2.2882 -2.3546 25 6 6.1601 -3.0006 3.7934 26 6 3.7936 -3.4919 4.5053 27 8 2.7475 -2.2511 2.4335 28 7 2.3778 -1.9618 1.3195 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.0401 0.8696 2.8265 37 1 3.4747 -2.8875 7.2616 38 1 3.9681 -1.1893 7.0506 39 1 5.8701 -2.6749 7.7551 40 1 6.1522 -1.8934 6.1801 41 1 5.0958 -4.7276 6.5993 42 1 6.7491 -4.2998 6.0990 43 1 4.5713 -5.9281 4.0412 44 1 6.3421 -5.7940 4.2975 45 1 4.6927 -5.0198 1.8996 46 1 6.4022 -5.5254 1.9757 47 1 5.7127 -5.0090 -0.9530 48 1 7.1896 -3.0743 4.1439 49 1 5.8085 -1.9710 3.8595 50 1 3.5398 -3.3212 3.4592 51 1 3.1460 -4.2654 4.9183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054209308.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:48 Heat of formation + Delta-G solvation = 39.258129 kcal Electronic energy + Delta-G solvation = -33649.464829 eV Core-core repulsion = 29552.320410 eV Total energy + Delta-G solvation = -4097.144420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.01544 -41.61622 -39.87130 -37.61760 -37.18075 -34.76047 -33.94309 -33.45350 -32.53501 -31.68953 -29.98415 -28.14694 -27.50262 -27.10132 -25.67752 -25.08522 -24.48872 -22.98134 -22.37638 -21.68211 -20.62432 -19.70784 -18.86220 -18.71517 -18.42203 -17.61852 -17.27058 -16.81987 -16.46747 -15.91054 -15.77038 -15.67613 -15.35814 -15.24788 -14.86035 -14.62912 -14.43528 -14.19326 -14.00550 -13.93688 -13.71084 -13.51541 -13.26148 -13.07967 -12.93507 -12.83467 -12.68877 -12.58154 -12.33576 -12.30184 -12.13012 -12.03851 -11.86850 -11.82813 -11.78606 -11.65405 -11.38430 -11.17188 -11.08389 -10.96186 -10.76159 -10.66595 -9.73136 -8.81381 -7.82636 -5.13653 -0.21116 1.10957 1.35191 1.36202 1.44279 1.50365 1.84962 2.08253 2.45910 2.99771 3.20420 3.36430 3.58870 3.73540 3.80205 3.85358 3.92837 4.00813 4.08253 4.10630 4.13844 4.21306 4.23408 4.36801 4.43101 4.49212 4.65465 4.74267 4.74883 4.81018 4.83907 4.85799 4.88792 4.89657 4.93712 4.97043 5.02882 5.11708 5.15546 5.17626 5.22318 5.26614 5.29626 5.38897 5.43393 5.49654 5.57077 5.76285 5.85879 6.06375 6.24319 6.72851 7.15506 7.23202 7.83404 8.46930 9.27094 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007974 B = 0.006445 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3510.782129 B = 4343.115861 C = 6961.312420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.023 4.023 3 C -0.140 4.140 4 C 0.008 3.992 5 C -0.145 4.145 6 C -0.106 4.106 7 C 0.607 3.393 8 O -0.546 6.546 9 N -0.586 5.586 10 C 0.109 3.891 11 C -0.129 4.129 12 C -0.096 4.096 13 C -0.073 4.073 14 C -0.119 4.119 15 C 0.187 3.813 16 N -0.615 5.615 17 C -0.224 4.224 18 H 0.061 0.939 19 C -0.049 4.049 20 N -0.938 5.938 21 Si 0.950 3.050 22 H -0.274 1.274 23 H -0.289 1.289 24 H -0.295 1.295 25 C 0.152 3.848 26 C 0.108 3.892 27 O 0.127 5.873 28 N -0.367 5.367 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.201 0.799 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.010 0.990 46 H 0.003 0.997 47 H 0.243 0.757 48 H 0.018 0.982 49 H 0.016 0.984 50 H 0.088 0.912 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 5.443 12.571 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.042 4.042 3 C -0.198 4.198 4 C -0.149 4.149 5 C -0.167 4.167 6 C -0.172 4.172 7 C 0.393 3.607 8 O -0.425 6.425 9 N -0.317 5.317 10 C -0.012 4.012 11 C -0.167 4.167 12 C -0.134 4.134 13 C -0.074 4.074 14 C -0.157 4.157 15 C 0.062 3.938 16 N -0.341 5.341 17 C -0.354 4.354 18 H 0.079 0.921 19 C -0.243 4.243 20 N -0.587 5.587 21 Si 0.780 3.220 22 H -0.198 1.198 23 H -0.216 1.216 24 H -0.223 1.223 25 C 0.027 3.973 26 C -0.014 4.014 27 O 0.056 5.944 28 N -0.069 5.069 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.218 0.782 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.028 0.972 46 H 0.021 0.979 47 H 0.053 0.947 48 H 0.036 0.964 49 H 0.035 0.965 50 H 0.105 0.895 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.633 4.934 11.861 15.478 hybrid contribution 0.572 0.894 -1.415 1.769 sum -8.061 5.828 10.446 14.425 Atomic orbital electron populations 1.21774 0.91325 1.02018 1.03980 1.19720 0.97723 0.96162 0.90593 1.21842 1.00609 0.93001 1.04324 1.24089 1.02368 0.90053 0.98418 1.22971 1.01174 1.01483 0.91081 1.24454 1.08221 0.89716 0.94784 1.16654 0.78032 0.83494 0.82531 1.90777 1.56863 1.32941 1.61929 1.48126 1.57420 1.11700 1.14413 1.21963 0.95910 1.04026 0.79273 1.21948 0.94919 0.96934 1.02872 1.21357 1.02464 0.97783 0.91750 1.21318 0.93942 0.95563 0.96621 1.22726 1.02548 0.95738 0.94699 1.20919 0.96347 0.84103 0.92457 1.44647 1.79733 1.09187 1.00503 1.19074 1.37997 0.93523 0.84793 0.92140 1.25269 1.02553 0.97132 0.99347 1.70141 1.54613 1.12048 1.21877 0.85426 0.76936 0.78488 0.81177 1.19837 1.21560 1.22289 1.21521 0.96016 0.95291 0.84498 1.22142 0.96665 0.85254 0.97344 1.85193 1.61465 1.34060 1.13691 1.73802 1.13303 1.18923 1.00850 0.91065 0.89229 0.93770 0.91195 0.93959 0.89211 0.90436 0.78229 0.88004 0.89398 0.87108 0.93432 0.88758 0.90805 0.89440 0.90208 0.97213 0.97913 0.94749 0.96386 0.96532 0.89453 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.18 71.98 0.66 -2.15 16 2 C -0.02 -0.62 3.38 -11.54 -0.04 -0.66 16 3 C -0.14 -3.06 8.81 71.98 0.63 -2.43 16 4 C 0.01 0.30 6.20 43.56 0.27 0.57 16 5 C -0.15 -4.71 10.13 22.68 0.23 -4.48 16 6 C -0.11 -3.86 6.99 24.39 0.17 -3.69 16 7 C 0.61 20.50 7.70 86.69 0.67 21.17 16 8 O -0.55 -19.46 16.36 -3.98 -0.07 -19.53 16 9 N -0.59 -16.82 2.60 -824.05 -2.15 -18.96 16 10 C 0.11 2.27 6.40 86.36 0.55 2.82 16 11 C -0.13 -2.46 5.93 30.72 0.18 -2.27 16 12 C -0.10 -1.98 4.64 30.35 0.14 -1.84 16 13 C -0.07 -2.20 0.55 -51.92 -0.03 -2.23 16 14 C -0.12 -3.92 5.89 31.55 0.19 -3.74 16 15 C 0.19 9.01 5.11 86.77 0.44 9.45 16 16 N -0.61 -31.27 3.33 -692.79 -2.31 -33.58 16 17 C -0.22 -12.92 10.28 84.03 0.86 -12.06 16 18 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 19 C -0.05 -2.88 5.49 84.86 0.47 -2.42 16 20 N -0.94 -57.32 10.31 21.65 0.22 -57.10 16 21 Si 0.95 48.13 29.55 68.60 2.03 50.15 16 22 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 25 C 0.15 6.15 5.20 86.54 0.45 6.60 16 26 C 0.11 3.29 4.89 86.01 0.42 3.72 16 27 O 0.13 5.26 7.76 65.89 0.51 5.77 16 28 N -0.37 -15.76 12.04 -48.86 -0.59 -16.35 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.42 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 1.42 7.48 -2.38 -0.02 1.40 16 36 H 0.20 5.20 7.65 -2.91 -0.02 5.17 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.95 7.03 -2.39 -0.02 1.94 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.14 7.40 -2.38 -0.02 1.13 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 43 H 0.09 2.48 7.99 -2.39 -0.02 2.46 16 44 H 0.08 2.39 8.00 -2.39 -0.02 2.37 16 45 H 0.01 0.53 7.40 -2.39 -0.02 0.51 16 46 H 0.00 0.15 7.48 -2.39 -0.02 0.13 16 47 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 48 H 0.02 0.74 7.97 -2.39 -0.02 0.72 16 49 H 0.02 0.71 7.65 -2.39 -0.02 0.69 16 50 H 0.09 3.39 3.61 -43.79 -0.16 3.23 16 51 H 0.10 2.44 8.12 -2.38 -0.02 2.42 16 Total: -1.00 -74.82 395.33 4.69 -70.13 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.77 Total: 13.10 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.27 Total: 6.35 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -4.82 Total: -125.99 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.45 Total: -13.75 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.15 kcal Total: -74.82 4.69 -70.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054209308.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.387 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds