Wall clock time and date at job start Wed Apr 1 2020 05:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47207 * 119.99557 * 2 1 3 5 5 O 1.33488 * 126.83526 * 300.17506 * 4 2 1 6 6 N 1.20658 * 113.16320 * 180.30701 * 5 4 2 7 7 C 1.30017 * 112.29677 * 359.71545 * 6 5 4 8 8 C 1.37357 * 126.82671 * 119.99834 * 4 2 1 9 9 C 1.47397 * 128.56531 * 0.02562 * 8 4 2 10 10 O 1.21609 * 120.00327 * 45.45881 * 9 8 4 11 11 N 1.34781 * 120.00387 * 225.46017 * 9 8 4 12 12 C 1.46932 * 120.70110 * 175.74507 * 11 9 8 13 13 C 1.53112 * 108.89204 * 234.19122 * 12 11 9 14 14 C 1.53171 * 109.32917 * 304.76345 * 13 12 11 15 15 C 1.52238 * 109.62089 * 60.18986 * 14 13 12 16 16 C 1.54486 * 110.28279 * 178.04158 * 15 14 13 17 17 C 1.55021 * 101.52757 * 276.20297 * 16 15 14 18 18 N 1.47488 * 104.91220 * 323.66079 * 17 16 15 19 19 C 1.36938 * 125.66417 * 204.02739 * 18 17 16 20 20 H 1.08002 * 119.99928 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99627 * 359.97438 * 19 18 17 22 22 N 1.31612 * 120.00359 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99722 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47133 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46951 * 119.99971 * 23 21 19 26 26 H 1.48493 * 109.47185 * 240.00032 * 23 21 19 27 27 C 1.47190 * 108.67099 * 24.00923 * 18 17 16 28 28 C 1.47077 * 120.69215 * 355.77499 * 11 9 8 29 29 H 1.09010 * 109.47469 * 300.00088 * 1 2 3 30 30 H 1.08999 * 109.47270 * 59.99693 * 1 2 3 31 31 H 1.08994 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47163 * 240.00232 * 2 1 3 33 33 H 1.09007 * 109.47257 * 60.00088 * 3 2 1 34 34 H 1.09000 * 109.47566 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47282 * 300.00300 * 3 2 1 36 36 H 1.08002 * 127.33474 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.56358 * 354.01520 * 12 11 9 38 38 H 1.08997 * 109.56213 * 114.35818 * 12 11 9 39 39 H 1.09002 * 109.44990 * 184.83316 * 13 12 11 40 40 H 1.08991 * 109.51351 * 64.74024 * 13 12 11 41 41 H 1.09002 * 109.43813 * 300.15912 * 14 13 12 42 42 H 1.08994 * 109.44152 * 180.23281 * 14 13 12 43 43 H 1.09001 * 111.01258 * 34.26667 * 16 15 14 44 44 H 1.09008 * 111.01057 * 158.14050 * 16 15 14 45 45 H 1.08995 * 110.35346 * 204.80392 * 17 16 15 46 46 H 1.08997 * 110.44208 * 82.56747 * 17 16 15 47 47 H 0.97001 * 120.00459 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.91218 * 239.09760 * 27 18 17 49 49 H 1.09002 * 109.91077 * 117.83617 * 27 18 17 50 50 H 1.08998 * 109.58247 * 7.69872 * 28 11 9 51 51 H 1.09005 * 109.57843 * 247.30189 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.7928 -0.3771 2.5007 6 7 2.3236 -1.1159 3.2934 7 6 2.9969 -2.0631 2.7105 8 6 2.8250 -1.8314 1.2680 9 6 3.3739 -2.6069 0.1411 10 8 3.8872 -2.0322 -0.7997 11 7 3.3068 -3.9529 0.1531 12 6 3.7642 -4.7372 -1.0021 13 6 2.6334 -5.6680 -1.4485 14 6 2.1840 -6.5254 -0.2615 15 6 1.6823 -5.6248 0.8587 16 6 1.1791 -6.4761 2.0456 17 6 -0.2683 -6.8056 1.5988 18 7 -0.7373 -5.5912 0.9056 19 6 -2.0451 -5.2174 0.7466 20 1 -2.2858 -4.3051 0.2210 21 6 -3.0612 -6.0111 1.2608 22 7 -2.7677 -7.1225 1.9017 23 14 -4.8451 -5.5008 1.0445 24 1 -4.9063 -4.2207 0.2942 25 1 -5.5725 -6.5521 0.2890 26 1 -5.4746 -5.3241 2.3778 27 6 0.4337 -4.8476 0.4135 28 6 2.7735 -4.6676 1.3227 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 3.5618 -2.8523 3.1845 37 1 4.0274 -4.0648 -1.8186 38 1 4.6346 -5.3293 -0.7197 39 1 2.9907 -6.3148 -2.2498 40 1 1.7930 -5.0739 -1.8071 41 1 3.0261 -7.1168 0.0982 42 1 1.3818 -7.1917 -0.5783 43 1 1.7713 -7.3847 2.1536 44 1 1.1810 -5.8980 2.9697 45 1 -0.8949 -7.0127 2.4663 46 1 -0.2721 -7.6564 0.9175 47 1 -3.4778 -7.6774 2.2607 48 1 0.4460 -3.8466 0.8449 49 1 0.4036 -4.7852 -0.6743 50 1 2.3545 -3.9508 2.0290 51 1 3.5737 -5.2311 1.8026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054223423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:05 Heat of formation + Delta-G solvation = 48.408580 kcal Electronic energy + Delta-G solvation = -33165.844536 eV Core-core repulsion = 29069.096910 eV Total energy + Delta-G solvation = -4096.747626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.94184 -40.43209 -38.51279 -36.18795 -35.65534 -34.00294 -32.95721 -32.11735 -30.81565 -30.19259 -28.48444 -27.31570 -26.22423 -25.71543 -24.15761 -23.90337 -23.46901 -21.90135 -20.84075 -20.23850 -19.44024 -18.13426 -17.80063 -17.46841 -16.90447 -16.55952 -16.05000 -15.49718 -15.14184 -14.73536 -14.68627 -14.39218 -14.14136 -13.85840 -13.64185 -13.42337 -13.38978 -13.20891 -12.98649 -12.64668 -12.35288 -12.15287 -11.98387 -11.76442 -11.61312 -11.57825 -11.41183 -11.14135 -11.05455 -10.97841 -10.94180 -10.87591 -10.68644 -10.36728 -10.30221 -10.14523 -9.96899 -9.85438 -9.76394 -9.52472 -9.42939 -8.67249 -8.54856 -6.84048 -5.67389 -3.08245 1.16835 1.79518 2.63334 2.77474 3.14564 3.37795 3.43628 3.45749 4.12403 4.19870 4.46510 4.51259 4.67408 4.79917 4.85667 4.88888 5.01331 5.07623 5.12353 5.16926 5.26402 5.42900 5.44411 5.48009 5.48545 5.53675 5.65620 5.68781 5.70203 5.73365 5.73585 5.80364 5.85720 5.88564 5.97449 6.02910 6.05609 6.16491 6.25181 6.32173 6.41292 6.49842 6.53783 6.63108 6.76350 6.88327 7.32328 7.48313 7.60843 7.83183 8.05958 8.14880 8.34034 9.20508 9.81504 10.46608 11.36632 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.004512 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.494726 B = 6204.659763 C = 7723.319390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.146 4.146 4 C 0.049 3.951 5 O 0.097 5.903 6 N -0.351 5.351 7 C 0.021 3.979 8 C -0.254 4.254 9 C 0.603 3.397 10 O -0.539 6.539 11 N -0.595 5.595 12 C 0.116 3.884 13 C -0.137 4.137 14 C -0.099 4.099 15 C -0.085 4.085 16 C -0.135 4.135 17 C 0.155 3.845 18 N -0.602 5.602 19 C -0.219 4.219 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.154 3.846 28 C 0.116 3.884 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.200 0.800 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.012 0.988 47 H 0.251 0.749 48 H 0.014 0.986 49 H 0.023 0.977 50 H 0.089 0.911 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.993 8.466 -2.750 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.038 4.038 3 C -0.203 4.203 4 C -0.015 4.015 5 O 0.036 5.964 6 N -0.055 5.055 7 C -0.161 4.161 8 C -0.261 4.261 9 C 0.391 3.609 10 O -0.418 6.418 11 N -0.327 5.327 12 C -0.006 4.006 13 C -0.175 4.175 14 C -0.137 4.137 15 C -0.086 4.086 16 C -0.174 4.174 17 C 0.030 3.970 18 N -0.328 5.328 19 C -0.348 4.348 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.028 3.972 28 C -0.007 4.007 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.216 0.784 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.122 0.878 46 H 0.030 0.970 47 H 0.062 0.938 48 H 0.032 0.968 49 H 0.041 0.959 50 H 0.107 0.893 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.808 9.050 -1.934 16.622 hybrid contribution -0.663 -0.490 -0.597 1.017 sum 13.145 8.561 -2.531 15.890 Atomic orbital electron populations 1.21923 0.92402 1.03593 1.03082 1.19997 0.97071 0.96362 0.90328 1.21850 1.01719 0.93762 1.02975 1.24705 0.95398 0.93822 0.87571 1.84531 1.55305 1.44100 1.12438 1.73652 1.11097 1.04681 1.16089 1.26314 1.00757 0.99299 0.89760 1.21957 1.09057 1.00611 0.94482 1.16833 0.78218 0.81453 0.84413 1.90774 1.45070 1.69910 1.36004 1.47965 1.61818 1.04834 1.18070 1.21617 0.96499 0.94072 0.88439 1.21990 0.98707 0.98359 0.98439 1.21343 1.00671 0.97326 0.94343 1.21357 0.94676 0.95700 0.96853 1.22998 1.00329 0.98067 0.96014 1.21908 0.88990 0.87864 0.98195 1.44547 1.00574 1.23232 1.64468 1.19084 0.80817 1.05090 1.29786 0.90686 1.24748 0.97970 0.97036 1.00798 1.69797 1.30288 1.14580 1.42402 0.86049 0.84858 0.77602 0.77331 1.20555 1.21762 1.21732 1.21210 0.86109 0.93564 0.96299 1.21997 0.96155 0.95341 0.87187 0.91621 0.91006 0.91434 0.87170 0.91801 0.91972 0.91049 0.78362 0.89118 0.91453 0.90831 0.90838 0.92275 0.90711 0.92043 0.92127 0.87758 0.96995 0.93826 0.96767 0.95924 0.89307 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.17 37.15 0.34 -1.35 16 2 C -0.02 -0.21 3.33 -91.77 -0.31 -0.51 16 3 C -0.15 -1.34 9.18 37.16 0.34 -1.00 16 4 C 0.05 0.66 6.06 -34.63 -0.21 0.45 16 5 O 0.10 1.38 11.06 18.66 0.21 1.58 16 6 N -0.35 -5.11 12.01 31.81 0.38 -4.73 16 7 C 0.02 0.28 10.10 -14.72 -0.15 0.13 16 8 C -0.25 -3.59 5.48 -102.89 -0.56 -4.16 16 9 C 0.60 8.96 7.36 -12.53 -0.09 8.87 16 10 O -0.54 -9.04 15.76 5.27 0.08 -8.96 16 11 N -0.60 -8.01 2.85 -174.45 -0.50 -8.51 16 12 C 0.12 1.38 6.40 -3.75 -0.02 1.36 16 13 C -0.14 -1.71 5.89 -26.59 -0.16 -1.87 16 14 C -0.10 -1.40 4.59 -27.03 -0.12 -1.52 16 15 C -0.08 -1.34 0.53 -154.09 -0.08 -1.43 16 16 C -0.13 -2.36 5.99 -24.88 -0.15 -2.51 16 17 C 0.16 3.61 5.57 -2.43 -0.01 3.59 16 18 N -0.60 -14.95 3.40 -170.23 -0.58 -15.53 16 19 C -0.22 -6.03 10.28 -15.06 -0.15 -6.18 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.15 3.12 6.14 -3.32 -0.02 3.10 16 28 C 0.12 1.54 4.54 -4.04 -0.02 1.52 16 29 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.11 1.38 7.05 -51.93 -0.37 1.01 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.20 1.98 7.61 -52.49 -0.40 1.58 16 37 H 0.09 1.13 7.03 -51.93 -0.36 0.76 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.07 6.34 -51.93 -0.33 0.75 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.23 7.52 -51.93 -0.39 0.84 16 43 H 0.06 0.93 8.01 -51.93 -0.42 0.52 16 44 H 0.06 1.05 8.02 -51.92 -0.42 0.63 16 45 H 0.10 2.78 5.88 -51.93 -0.31 2.47 16 46 H 0.01 0.30 7.78 -51.93 -0.40 -0.11 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.01 0.31 7.66 -51.93 -0.40 -0.09 16 49 H 0.02 0.48 6.01 -51.93 -0.31 0.17 16 50 H 0.09 1.24 4.21 -51.93 -0.22 1.02 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -31.53 392.83 -8.52 -40.05 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -8.09 Total: 1.00 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.89 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.13 Total: -54.66 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.29 Total: -7.37 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.53 -8.52 -40.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054223423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.459 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds