Wall clock time and date at job start Wed Apr 1 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 C 1.50699 * 109.47207 * 119.99557 * 2 1 3 5 5 O 1.33488 * 126.83526 * 300.17506 * 4 2 1 6 6 N 1.20658 * 113.16320 * 180.30701 * 5 4 2 7 7 C 1.30017 * 112.29677 * 359.71545 * 6 5 4 8 8 C 1.37357 * 126.82671 * 119.99834 * 4 2 1 9 9 C 1.47397 * 128.56531 * 0.02562 * 8 4 2 10 10 O 1.21609 * 120.00327 * 45.45881 * 9 8 4 11 11 N 1.34781 * 120.00387 * 225.46017 * 9 8 4 12 12 C 1.46932 * 120.70110 * 175.74507 * 11 9 8 13 13 C 1.53112 * 108.89204 * 234.19122 * 12 11 9 14 14 C 1.53171 * 109.32917 * 304.76345 * 13 12 11 15 15 C 1.52238 * 109.62089 * 60.18986 * 14 13 12 16 16 C 1.54486 * 110.28279 * 178.04158 * 15 14 13 17 17 C 1.55021 * 101.52757 * 276.20297 * 16 15 14 18 18 N 1.47488 * 104.91220 * 323.66079 * 17 16 15 19 19 C 1.36938 * 125.66417 * 204.02739 * 18 17 16 20 20 H 1.08002 * 119.99928 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99627 * 359.97438 * 19 18 17 22 22 N 1.31612 * 120.00359 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99722 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47133 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46951 * 119.99971 * 23 21 19 26 26 H 1.48493 * 109.47185 * 240.00032 * 23 21 19 27 27 C 1.47190 * 108.67099 * 24.00923 * 18 17 16 28 28 C 1.47077 * 120.69215 * 355.77499 * 11 9 8 29 29 H 1.09010 * 109.47469 * 300.00088 * 1 2 3 30 30 H 1.08999 * 109.47270 * 59.99693 * 1 2 3 31 31 H 1.08994 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47163 * 240.00232 * 2 1 3 33 33 H 1.09007 * 109.47257 * 60.00088 * 3 2 1 34 34 H 1.09000 * 109.47566 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47282 * 300.00300 * 3 2 1 36 36 H 1.08002 * 127.33474 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.56358 * 354.01520 * 12 11 9 38 38 H 1.08997 * 109.56213 * 114.35818 * 12 11 9 39 39 H 1.09002 * 109.44990 * 184.83316 * 13 12 11 40 40 H 1.08991 * 109.51351 * 64.74024 * 13 12 11 41 41 H 1.09002 * 109.43813 * 300.15912 * 14 13 12 42 42 H 1.08994 * 109.44152 * 180.23281 * 14 13 12 43 43 H 1.09001 * 111.01258 * 34.26667 * 16 15 14 44 44 H 1.09008 * 111.01057 * 158.14050 * 16 15 14 45 45 H 1.08995 * 110.35346 * 204.80392 * 17 16 15 46 46 H 1.08997 * 110.44208 * 82.56747 * 17 16 15 47 47 H 0.97001 * 120.00459 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.91218 * 239.09760 * 27 18 17 49 49 H 1.09002 * 109.91077 * 117.83617 * 27 18 17 50 50 H 1.08998 * 109.58247 * 7.69872 * 28 11 9 51 51 H 1.09005 * 109.57843 * 247.30189 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.7928 -0.3771 2.5007 6 7 2.3236 -1.1159 3.2934 7 6 2.9969 -2.0631 2.7105 8 6 2.8250 -1.8314 1.2680 9 6 3.3739 -2.6069 0.1411 10 8 3.8872 -2.0322 -0.7997 11 7 3.3068 -3.9529 0.1531 12 6 3.7642 -4.7372 -1.0021 13 6 2.6334 -5.6680 -1.4485 14 6 2.1840 -6.5254 -0.2615 15 6 1.6823 -5.6248 0.8587 16 6 1.1791 -6.4761 2.0456 17 6 -0.2683 -6.8056 1.5988 18 7 -0.7373 -5.5912 0.9056 19 6 -2.0451 -5.2174 0.7466 20 1 -2.2858 -4.3051 0.2210 21 6 -3.0612 -6.0111 1.2608 22 7 -2.7677 -7.1225 1.9017 23 14 -4.8451 -5.5008 1.0445 24 1 -4.9063 -4.2207 0.2942 25 1 -5.5725 -6.5521 0.2890 26 1 -5.4746 -5.3241 2.3778 27 6 0.4337 -4.8476 0.4135 28 6 2.7735 -4.6676 1.3227 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 3.5618 -2.8523 3.1845 37 1 4.0274 -4.0648 -1.8186 38 1 4.6346 -5.3293 -0.7197 39 1 2.9907 -6.3148 -2.2498 40 1 1.7930 -5.0739 -1.8071 41 1 3.0261 -7.1168 0.0982 42 1 1.3818 -7.1917 -0.5783 43 1 1.7713 -7.3847 2.1536 44 1 1.1810 -5.8980 2.9697 45 1 -0.8949 -7.0127 2.4663 46 1 -0.2721 -7.6564 0.9175 47 1 -3.4778 -7.6774 2.2607 48 1 0.4460 -3.8466 0.8449 49 1 0.4036 -4.7852 -0.6743 50 1 2.3545 -3.9508 2.0290 51 1 3.5737 -5.2311 1.8026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054223423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:04 Heat of formation + Delta-G solvation = 30.792116 kcal Electronic energy + Delta-G solvation = -33166.608444 eV Core-core repulsion = 29069.096910 eV Total energy + Delta-G solvation = -4097.511534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.99073 -41.62548 -39.84956 -37.33660 -36.89942 -35.08455 -34.64603 -33.30027 -32.00929 -31.77427 -30.06997 -28.14927 -27.51111 -27.30738 -25.40348 -25.20073 -24.61730 -23.02354 -22.24682 -21.63198 -20.65538 -19.36357 -18.92391 -18.84055 -18.51918 -17.58241 -17.18778 -16.89750 -16.52161 -16.32224 -15.94122 -15.58003 -15.39616 -15.18256 -14.76358 -14.58237 -14.54238 -14.25591 -14.17057 -13.97039 -13.85406 -13.40452 -13.27530 -13.12984 -12.83491 -12.79289 -12.74263 -12.45711 -12.37953 -12.31357 -12.24955 -12.11734 -11.99137 -11.91885 -11.69677 -11.66012 -11.45990 -11.35423 -11.10021 -11.01228 -10.74099 -10.50607 -9.65382 -8.87541 -7.78950 -5.21946 0.10422 0.76172 1.43219 1.43506 1.53478 1.54206 1.72332 2.09730 2.46904 3.12762 3.20575 3.29996 3.45524 3.62759 3.63538 3.73321 3.81625 3.94156 3.98882 4.01113 4.10958 4.17960 4.24476 4.32486 4.42970 4.49061 4.52687 4.65183 4.68175 4.70773 4.73555 4.79875 4.81543 4.82363 4.87117 4.88902 4.93971 5.02470 5.11452 5.15992 5.20441 5.24188 5.26760 5.41750 5.44100 5.44388 5.52375 5.68419 5.83404 6.22203 6.31707 6.95271 7.09329 7.11173 7.78583 8.42113 9.22467 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.004512 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.494726 B = 6204.659763 C = 7723.319390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.018 4.018 3 C -0.140 4.140 4 C 0.046 3.954 5 O 0.087 5.913 6 N -0.373 5.373 7 C 0.033 3.967 8 C -0.275 4.275 9 C 0.603 3.397 10 O -0.564 6.564 11 N -0.593 5.593 12 C 0.117 3.883 13 C -0.130 4.130 14 C -0.096 4.096 15 C -0.073 4.073 16 C -0.119 4.119 17 C 0.157 3.843 18 N -0.623 5.623 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.061 4.061 22 N -0.945 5.945 23 Si 0.971 3.029 24 H -0.270 1.270 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.156 3.844 28 C 0.121 3.879 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.064 0.936 45 H 0.068 0.932 46 H -0.011 1.011 47 H 0.247 0.753 48 H 0.001 0.999 49 H 0.012 0.988 50 H 0.082 0.918 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.056 8.610 -2.765 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 C -0.197 4.197 4 C -0.018 4.018 5 O 0.029 5.971 6 N -0.080 5.080 7 C -0.149 4.149 8 C -0.282 4.282 9 C 0.391 3.609 10 O -0.444 6.444 11 N -0.323 5.323 12 C -0.005 4.005 13 C -0.168 4.168 14 C -0.133 4.133 15 C -0.074 4.074 16 C -0.158 4.158 17 C 0.032 3.968 18 N -0.349 5.349 19 C -0.365 4.365 20 H 0.088 0.912 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.800 3.200 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.031 3.969 28 C -0.001 4.001 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.247 0.753 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.006 0.994 47 H 0.056 0.944 48 H 0.019 0.981 49 H 0.030 0.970 50 H 0.100 0.900 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 15.882 9.208 -1.964 18.462 hybrid contribution -1.345 -0.549 -0.644 1.589 sum 14.537 8.658 -2.609 17.120 Atomic orbital electron populations 1.21893 0.92209 1.02025 1.04410 1.20068 0.97120 0.97584 0.88979 1.21831 1.01386 0.92158 1.04313 1.25144 0.94920 0.93800 0.87904 1.84508 1.55661 1.44361 1.12561 1.73633 1.12187 1.05550 1.16634 1.26804 0.99793 0.99178 0.89175 1.22097 1.09916 1.01116 0.95069 1.16907 0.77944 0.81883 0.84178 1.90756 1.46326 1.70410 1.36909 1.48026 1.61207 1.04512 1.18589 1.21756 0.97032 0.93831 0.87844 1.21930 0.98004 0.98277 0.98579 1.21329 1.00896 0.96938 0.94168 1.21292 0.93542 0.95775 0.96810 1.22845 0.96593 0.99837 0.96481 1.21699 0.92219 0.86846 0.96019 1.44841 1.00976 1.24138 1.64914 1.19364 0.82640 1.04992 1.29525 0.91175 1.25505 1.01619 0.97287 1.00988 1.70045 1.30915 1.15351 1.43136 0.85110 0.80264 0.77512 0.77103 1.19496 1.21753 1.21702 1.21299 0.86957 0.93203 0.95402 1.21995 0.96335 0.94834 0.86954 0.91137 0.88854 0.94334 0.88402 0.91139 0.92417 0.89037 0.75337 0.89720 0.88132 0.88221 0.93871 0.88685 0.93603 0.88677 0.91703 0.91445 0.99352 0.94357 0.98104 0.96982 0.89996 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.17 71.98 0.66 -2.63 16 2 C -0.02 -0.41 3.33 -11.54 -0.04 -0.45 16 3 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 4 C 0.05 1.26 6.06 25.48 0.15 1.41 16 5 O 0.09 2.45 11.06 77.03 0.85 3.30 16 6 N -0.37 -10.60 12.01 -54.19 -0.65 -11.25 16 7 C 0.03 0.81 10.10 87.29 0.88 1.69 16 8 C -0.27 -7.57 5.48 -18.75 -0.10 -7.67 16 9 C 0.60 17.17 7.36 86.65 0.64 17.81 16 10 O -0.56 -18.49 15.76 -4.06 -0.06 -18.55 16 11 N -0.59 -14.49 2.85 -824.10 -2.35 -16.84 16 12 C 0.12 2.42 6.40 86.33 0.55 2.97 16 13 C -0.13 -2.97 5.89 30.69 0.18 -2.79 16 14 C -0.10 -2.46 4.59 30.40 0.14 -2.32 16 15 C -0.07 -2.18 0.53 -51.91 -0.03 -2.21 16 16 C -0.12 -3.93 5.99 31.79 0.19 -3.74 16 17 C 0.16 7.46 5.57 86.88 0.48 7.94 16 18 N -0.62 -31.88 3.40 -692.48 -2.36 -34.23 16 19 C -0.24 -13.40 10.28 84.03 0.86 -12.54 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 22 N -0.94 -55.96 10.09 21.65 0.22 -55.74 16 23 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 C 0.16 6.43 6.14 86.47 0.53 6.96 16 28 C 0.12 2.83 4.54 86.07 0.39 3.22 16 29 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 2.49 7.05 -2.39 -0.02 2.48 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.23 3.85 7.61 -2.91 -0.02 3.82 16 37 H 0.08 1.92 7.03 -2.39 -0.02 1.90 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.25 6.34 -2.39 -0.02 1.23 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.05 1.46 7.52 -2.39 -0.02 1.44 16 43 H 0.09 2.55 8.01 -2.39 -0.02 2.53 16 44 H 0.06 2.11 8.02 -2.38 -0.02 2.09 16 45 H 0.07 3.72 5.88 -2.39 -0.01 3.71 16 46 H -0.01 -0.59 7.78 -2.39 -0.02 -0.61 16 47 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.00 0.04 7.66 -2.39 -0.02 0.03 16 49 H 0.01 0.53 6.01 -2.39 -0.01 0.52 16 50 H 0.08 2.08 4.21 -2.39 -0.01 2.07 16 51 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -72.22 392.83 5.23 -66.99 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.93 Total: 15.33 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.62 Total: 2.88 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -5.14 Total: -118.07 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.79 Total: -15.25 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -72.22 5.23 -66.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054223423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.779 kcal (2) G-P(sol) polarization free energy of solvation -72.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds