Wall clock time and date at job start Wed Apr 1 2020 04:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47375 * 2 1 4 4 N 1.30619 * 125.42169 * 90.02587 * 3 2 1 5 5 C 1.33689 * 108.99656 * 179.70888 * 4 3 2 6 6 C 1.50694 * 126.27784 * 180.27069 * 5 4 3 7 7 C 1.36342 * 107.44847 * 0.43098 * 5 4 3 8 8 C 1.46728 * 126.64180 * 179.83822 * 7 5 4 9 9 O 1.21687 * 119.99877 * 352.25764 * 8 7 5 10 10 N 1.34775 * 120.00115 * 172.25359 * 8 7 5 11 11 C 1.46949 * 120.71857 * 352.84336 * 10 8 7 12 12 C 1.53187 * 108.89754 * 234.30435 * 11 10 8 13 13 C 1.53176 * 109.27720 * 304.60833 * 12 11 10 14 14 C 1.52062 * 109.73119 * 59.93377 * 13 12 11 15 15 C 1.54584 * 110.68042 * 64.30793 * 14 13 12 16 16 C 1.54473 * 102.76202 * 152.61527 * 15 14 13 17 17 N 1.47084 * 107.42426 * 338.69928 * 16 15 14 18 18 C 1.36934 * 125.62935 * 178.94703 * 17 16 15 19 19 H 1.07997 * 120.00420 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99854 * 359.97438 * 18 17 16 21 21 N 1.31616 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99990 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47197 * 90.00019 * 22 20 18 24 24 H 1.48503 * 109.46727 * 209.99935 * 22 20 18 25 25 H 1.48500 * 109.46784 * 329.99470 * 22 20 18 26 26 C 1.47570 * 108.74596 * 358.92465 * 17 16 15 27 27 C 1.47102 * 120.72034 * 172.81115 * 10 8 7 28 28 O 1.33663 * 125.42217 * 270.00065 * 3 2 1 29 29 H 1.09000 * 109.46701 * 299.99778 * 1 2 3 30 30 H 1.09007 * 109.47183 * 59.99842 * 1 2 3 31 31 H 1.08997 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47140 * 239.99720 * 2 1 3 33 33 H 1.09001 * 109.47153 * 120.00590 * 2 1 3 34 34 H 1.09005 * 109.46960 * 270.19460 * 6 5 4 35 35 H 1.08999 * 109.47184 * 30.18660 * 6 5 4 36 36 H 1.08995 * 109.47626 * 150.18830 * 6 5 4 37 37 H 1.08998 * 109.56881 * 114.47926 * 11 10 8 38 38 H 1.09001 * 109.66149 * 354.18410 * 11 10 8 39 39 H 1.09011 * 109.50345 * 184.67172 * 12 11 10 40 40 H 1.09003 * 109.54172 * 64.57581 * 12 11 10 41 41 H 1.09000 * 109.42975 * 299.85364 * 13 12 11 42 42 H 1.08999 * 109.38573 * 179.97438 * 13 12 11 43 43 H 1.09000 * 110.70574 * 34.34688 * 15 14 13 44 44 H 1.08996 * 110.86318 * 270.96116 * 15 14 13 45 45 H 1.08998 * 109.88014 * 219.19826 * 16 15 14 46 46 H 1.09000 * 109.87557 * 98.19583 * 16 15 14 47 47 H 0.97006 * 120.00108 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.38221 * 142.11974 * 26 17 16 49 49 H 1.09000 * 110.37753 * 264.47184 * 26 17 16 50 50 H 1.09006 * 109.56381 * 7.98307 * 27 10 8 51 51 H 1.08993 * 109.57206 * 247.62346 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2852 2.1344 1.0644 5 6 2.7186 3.3412 0.6864 6 6 3.1262 4.4686 1.5995 7 6 2.7208 3.3663 -0.6768 8 6 3.1186 4.4909 -1.5313 9 8 3.3583 5.5762 -1.0360 10 7 3.2185 4.3216 -2.8646 11 6 3.0866 2.9863 -3.4638 12 6 4.3208 2.7056 -4.3266 13 6 4.4829 3.8269 -5.3575 14 6 4.6547 5.1589 -4.6444 15 6 5.9628 5.1725 -3.8208 16 6 6.3284 6.6730 -3.7858 17 7 5.6386 7.3208 -4.9118 18 6 5.6882 8.6548 -5.2167 19 1 5.1443 9.0346 -6.0689 20 6 6.4377 9.5191 -4.4304 21 7 7.1002 9.0563 -3.3915 22 14 6.5048 11.3391 -4.8459 23 1 5.4065 12.0484 -4.1417 24 1 7.8114 11.8974 -4.4143 25 1 6.3499 11.5181 -6.3119 26 6 4.8848 6.2957 -5.6592 27 6 3.4614 5.4697 -3.7517 28 8 2.2906 2.1512 -1.0892 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2567 5.0863 1.8246 35 1 3.5298 4.0585 2.5253 36 1 3.8867 5.0764 1.1094 37 1 2.1915 2.9517 -4.0848 38 1 3.0137 2.2365 -2.6761 39 1 4.1957 1.7530 -4.8418 40 1 5.2067 2.6629 -3.6929 41 1 3.5975 3.8669 -5.9920 42 1 5.3610 3.6291 -5.9722 43 1 6.7406 4.5976 -4.3233 44 1 5.7912 4.7936 -2.8133 45 1 7.4063 6.7944 -3.8921 46 1 5.9969 7.1133 -2.8454 47 1 7.6237 9.6603 -2.8418 48 1 3.9312 6.6989 -6.0000 49 1 5.4699 5.9360 -6.5056 50 1 3.6743 6.3552 -3.1527 51 1 2.5805 5.6472 -4.3685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054223974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:43 Heat of formation + Delta-G solvation = 14.482196 kcal Electronic energy + Delta-G solvation = -32366.438600 eV Core-core repulsion = 28268.219815 eV Total energy + Delta-G solvation = -4098.218785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.64984 -40.28594 -38.30165 -36.16405 -35.31174 -34.54193 -33.07060 -31.93526 -30.98965 -29.91137 -28.66783 -28.05249 -25.88215 -25.62493 -24.56917 -23.72000 -22.01329 -21.92080 -21.44980 -20.30277 -19.91009 -18.30182 -17.35411 -17.14643 -16.68164 -16.37369 -15.96481 -15.21938 -15.04660 -14.76812 -14.56801 -14.34546 -14.02824 -13.87635 -13.60325 -13.38608 -13.30972 -13.12168 -13.02192 -12.86392 -12.43547 -12.34379 -12.24108 -12.07931 -11.93634 -11.67237 -11.63473 -11.29552 -11.09966 -11.02236 -10.85776 -10.81506 -10.62418 -10.56898 -10.12828 -10.07316 -9.90487 -9.86203 -9.64326 -9.50955 -8.99103 -8.52047 -8.47017 -6.75342 -5.62995 -2.96887 0.71299 2.16711 2.25607 2.98486 3.14469 3.45151 3.49492 3.51712 3.62326 4.37676 4.53637 4.55205 4.64265 4.67165 4.77120 4.86972 4.94953 5.02955 5.15802 5.23520 5.29730 5.31166 5.34122 5.41977 5.52107 5.58907 5.62951 5.65236 5.67984 5.72813 5.80659 5.83409 5.92064 5.95717 5.99631 6.03563 6.14504 6.24848 6.26271 6.32856 6.45800 6.50077 6.61113 6.70903 6.78765 6.90619 7.31181 7.49919 7.64029 7.73669 7.93264 8.09909 8.33924 9.29376 9.89956 10.56199 11.48214 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002989 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.820070 B = 9365.359835 C =10472.422152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.029 4.029 3 C 0.207 3.793 4 N -0.486 5.486 5 C 0.079 3.921 6 C -0.080 4.080 7 C -0.109 4.109 8 C 0.602 3.398 9 O -0.501 6.501 10 N -0.597 5.597 11 C 0.098 3.902 12 C -0.132 4.132 13 C -0.102 4.102 14 C -0.087 4.087 15 C -0.128 4.128 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.149 3.851 27 C 0.135 3.865 28 O -0.182 6.182 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.039 0.961 46 H 0.048 0.952 47 H 0.251 0.749 48 H 0.038 0.962 49 H 0.022 0.978 50 H 0.108 0.892 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.873 -21.779 4.012 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.067 4.067 3 C 0.002 3.998 4 N -0.216 5.216 5 C -0.045 4.045 6 C -0.137 4.137 7 C -0.164 4.164 8 C 0.388 3.612 9 O -0.377 6.377 10 N -0.329 5.329 11 C -0.025 4.025 12 C -0.170 4.170 13 C -0.140 4.140 14 C -0.089 4.089 15 C -0.166 4.166 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.022 3.978 27 C 0.015 3.985 28 O -0.070 6.070 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.040 0.960 50 H 0.126 0.874 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.714 -21.205 4.902 24.717 hybrid contribution 0.191 1.060 -0.943 1.432 sum -11.523 -20.145 3.959 23.543 Atomic orbital electron populations 1.21788 0.92798 1.03130 1.03169 1.20158 0.97059 0.84010 1.05482 1.26638 0.97108 0.96738 0.79324 1.70324 1.17510 1.03748 1.29982 1.22062 0.97194 0.93909 0.91329 1.20377 1.02925 0.93065 0.97343 1.23080 1.12177 0.85938 0.95174 1.16472 0.78222 0.85142 0.81339 1.90936 1.49926 1.23942 1.72923 1.48030 1.70112 1.09490 1.05315 1.22084 0.98479 0.83896 0.97996 1.21922 0.98129 0.98791 0.98134 1.21333 1.01945 0.93614 0.97092 1.21460 0.95517 0.95273 0.96608 1.22826 0.95056 1.00467 0.98289 1.21160 0.96288 0.85520 0.91618 1.44511 1.55330 1.03215 1.30001 1.19016 1.25233 0.81750 1.09739 0.90542 1.24797 0.99806 0.98061 0.97690 1.69979 1.35001 1.33281 1.18318 0.86152 0.77005 0.85233 0.77554 1.21623 1.21758 1.20791 1.21411 0.95154 0.88500 0.92715 1.21539 0.96587 0.88485 0.91933 1.84612 1.63914 1.22265 1.36217 0.91655 0.91999 0.90696 0.88575 0.87410 0.89930 0.90571 0.88580 0.91321 0.88705 0.90963 0.91305 0.92044 0.91395 0.92720 0.92603 0.94296 0.93359 0.93813 0.94358 0.96025 0.87379 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.36 16 3 C 0.21 2.23 7.57 -12.79 -0.10 2.13 16 4 N -0.49 -6.38 11.26 -7.07 -0.08 -6.46 16 5 C 0.08 1.13 7.16 -82.47 -0.59 0.54 16 6 C -0.08 -1.04 9.80 36.00 0.35 -0.69 16 7 C -0.11 -1.60 6.80 -36.84 -0.25 -1.85 16 8 C 0.60 10.15 7.65 -12.83 -0.10 10.05 16 9 O -0.50 -10.09 14.35 5.20 0.07 -10.02 16 10 N -0.60 -9.12 2.60 -174.72 -0.45 -9.57 16 11 C 0.10 1.14 6.12 -3.70 -0.02 1.12 16 12 C -0.13 -1.47 5.92 -26.54 -0.16 -1.62 16 13 C -0.10 -1.32 4.65 -27.12 -0.13 -1.45 16 14 C -0.09 -1.48 0.56 -153.97 -0.09 -1.56 16 15 C -0.13 -2.49 4.92 -25.13 -0.12 -2.61 16 16 C 0.18 4.50 4.95 -2.95 -0.01 4.48 16 17 N -0.60 -15.53 3.39 -170.31 -0.58 -16.11 16 18 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -27.81 10.30 55.49 0.57 -27.24 16 22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 C 0.15 3.03 6.15 -2.87 -0.02 3.01 16 27 C 0.14 2.34 5.08 -4.11 -0.02 2.32 16 28 O -0.18 -2.21 7.45 4.43 0.03 -2.17 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.10 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.41 6.66 -51.93 -0.35 1.06 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.06 4.24 -52.79 -0.22 0.83 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.07 0.86 7.42 -51.93 -0.39 0.47 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.05 1.00 7.99 -51.93 -0.41 0.58 16 44 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16 45 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 46 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.04 0.75 8.01 -51.93 -0.42 0.34 16 49 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 50 H 0.11 2.34 6.61 -51.93 -0.34 1.99 16 51 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 LS Contribution 395.04 15.07 5.95 5.95 Total: -1.00 -33.70 395.04 -9.15 -42.85 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -8.33 Total: -1.03 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.32 Total: 6.18 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.54 Total: -59.38 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.11 Total: -12.19 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.70 -9.15 -42.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054223974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.334 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds