Wall clock time and date at job start Wed Apr 1 2020 04:25:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50699 * 109.47375 * 2 1
4 4 N 1.30619 * 125.42169 * 90.02587 * 3 2 1
5 5 C 1.33689 * 108.99656 * 179.70888 * 4 3 2
6 6 C 1.50694 * 126.27784 * 180.27069 * 5 4 3
7 7 C 1.36342 * 107.44847 * 0.43098 * 5 4 3
8 8 C 1.46728 * 126.64180 * 179.83822 * 7 5 4
9 9 O 1.21687 * 119.99877 * 352.25764 * 8 7 5
10 10 N 1.34775 * 120.00115 * 172.25359 * 8 7 5
11 11 C 1.46949 * 120.71857 * 352.84336 * 10 8 7
12 12 C 1.53187 * 108.89754 * 234.30435 * 11 10 8
13 13 C 1.53176 * 109.27720 * 304.60833 * 12 11 10
14 14 C 1.52062 * 109.73119 * 59.93377 * 13 12 11
15 15 C 1.54584 * 110.68042 * 64.30793 * 14 13 12
16 16 C 1.54473 * 102.76202 * 152.61527 * 15 14 13
17 17 N 1.47084 * 107.42426 * 338.69928 * 16 15 14
18 18 C 1.36934 * 125.62935 * 178.94703 * 17 16 15
19 19 H 1.07997 * 120.00420 * 179.97438 * 18 17 16
20 20 C 1.38815 * 119.99854 * 359.97438 * 18 17 16
21 21 N 1.31616 * 119.99961 * 359.97438 * 20 18 17
22 22 Si 1.86807 * 119.99990 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47197 * 90.00019 * 22 20 18
24 24 H 1.48503 * 109.46727 * 209.99935 * 22 20 18
25 25 H 1.48500 * 109.46784 * 329.99470 * 22 20 18
26 26 C 1.47570 * 108.74596 * 358.92465 * 17 16 15
27 27 C 1.47102 * 120.72034 * 172.81115 * 10 8 7
28 28 O 1.33663 * 125.42217 * 270.00065 * 3 2 1
29 29 H 1.09000 * 109.46701 * 299.99778 * 1 2 3
30 30 H 1.09007 * 109.47183 * 59.99842 * 1 2 3
31 31 H 1.08997 * 109.47175 * 179.97438 * 1 2 3
32 32 H 1.09007 * 109.47140 * 239.99720 * 2 1 3
33 33 H 1.09001 * 109.47153 * 120.00590 * 2 1 3
34 34 H 1.09005 * 109.46960 * 270.19460 * 6 5 4
35 35 H 1.08999 * 109.47184 * 30.18660 * 6 5 4
36 36 H 1.08995 * 109.47626 * 150.18830 * 6 5 4
37 37 H 1.08998 * 109.56881 * 114.47926 * 11 10 8
38 38 H 1.09001 * 109.66149 * 354.18410 * 11 10 8
39 39 H 1.09011 * 109.50345 * 184.67172 * 12 11 10
40 40 H 1.09003 * 109.54172 * 64.57581 * 12 11 10
41 41 H 1.09000 * 109.42975 * 299.85364 * 13 12 11
42 42 H 1.08999 * 109.38573 * 179.97438 * 13 12 11
43 43 H 1.09000 * 110.70574 * 34.34688 * 15 14 13
44 44 H 1.08996 * 110.86318 * 270.96116 * 15 14 13
45 45 H 1.08998 * 109.88014 * 219.19826 * 16 15 14
46 46 H 1.09000 * 109.87557 * 98.19583 * 16 15 14
47 47 H 0.97006 * 120.00108 * 180.02562 * 21 20 18
48 48 H 1.09001 * 110.38221 * 142.11974 * 26 17 16
49 49 H 1.09000 * 110.37753 * 264.47184 * 26 17 16
50 50 H 1.09006 * 109.56381 * 7.98307 * 27 10 8
51 51 H 1.08993 * 109.57206 * 247.62346 * 27 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2852 2.1344 1.0644
5 6 2.7186 3.3412 0.6864
6 6 3.1262 4.4686 1.5995
7 6 2.7208 3.3663 -0.6768
8 6 3.1186 4.4909 -1.5313
9 8 3.3583 5.5762 -1.0360
10 7 3.2185 4.3216 -2.8646
11 6 3.0866 2.9863 -3.4638
12 6 4.3208 2.7056 -4.3266
13 6 4.4829 3.8269 -5.3575
14 6 4.6547 5.1589 -4.6444
15 6 5.9628 5.1725 -3.8208
16 6 6.3284 6.6730 -3.7858
17 7 5.6386 7.3208 -4.9118
18 6 5.6882 8.6548 -5.2167
19 1 5.1443 9.0346 -6.0689
20 6 6.4377 9.5191 -4.4304
21 7 7.1002 9.0563 -3.3915
22 14 6.5048 11.3391 -4.8459
23 1 5.4065 12.0484 -4.1417
24 1 7.8114 11.8974 -4.4143
25 1 6.3499 11.5181 -6.3119
26 6 4.8848 6.2957 -5.6592
27 6 3.4614 5.4697 -3.7517
28 8 2.2906 2.1512 -1.0892
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 2.2567 5.0863 1.8246
35 1 3.5298 4.0585 2.5253
36 1 3.8867 5.0764 1.1094
37 1 2.1915 2.9517 -4.0848
38 1 3.0137 2.2365 -2.6761
39 1 4.1957 1.7530 -4.8418
40 1 5.2067 2.6629 -3.6929
41 1 3.5975 3.8669 -5.9920
42 1 5.3610 3.6291 -5.9722
43 1 6.7406 4.5976 -4.3233
44 1 5.7912 4.7936 -2.8133
45 1 7.4063 6.7944 -3.8921
46 1 5.9969 7.1133 -2.8454
47 1 7.6237 9.6603 -2.8418
48 1 3.9312 6.6989 -6.0000
49 1 5.4699 5.9360 -6.5056
50 1 3.6743 6.3552 -3.1527
51 1 2.5805 5.6472 -4.3685
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054223974.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:43
Heat of formation + Delta-G solvation = 14.482196 kcal
Electronic energy + Delta-G solvation = -32366.438600 eV
Core-core repulsion = 28268.219815 eV
Total energy + Delta-G solvation = -4098.218785 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-43.64984 -40.28594 -38.30165 -36.16405 -35.31174 -34.54193 -33.07060 -31.93526
-30.98965 -29.91137 -28.66783 -28.05249 -25.88215 -25.62493 -24.56917 -23.72000
-22.01329 -21.92080 -21.44980 -20.30277 -19.91009 -18.30182 -17.35411 -17.14643
-16.68164 -16.37369 -15.96481 -15.21938 -15.04660 -14.76812 -14.56801 -14.34546
-14.02824 -13.87635 -13.60325 -13.38608 -13.30972 -13.12168 -13.02192 -12.86392
-12.43547 -12.34379 -12.24108 -12.07931 -11.93634 -11.67237 -11.63473 -11.29552
-11.09966 -11.02236 -10.85776 -10.81506 -10.62418 -10.56898 -10.12828 -10.07316
-9.90487 -9.86203 -9.64326 -9.50955 -8.99103 -8.52047 -8.47017 -6.75342
-5.62995 -2.96887 0.71299 2.16711 2.25607 2.98486 3.14469 3.45151
3.49492 3.51712 3.62326 4.37676 4.53637 4.55205 4.64265 4.67165
4.77120 4.86972 4.94953 5.02955 5.15802 5.23520 5.29730 5.31166
5.34122 5.41977 5.52107 5.58907 5.62951 5.65236 5.67984 5.72813
5.80659 5.83409 5.92064 5.95717 5.99631 6.03563 6.14504 6.24848
6.26271 6.32856 6.45800 6.50077 6.61113 6.70903 6.78765 6.90619
7.31181 7.49919 7.64029 7.73669 7.93264 8.09909 8.33924 9.29376
9.89956 10.56199 11.48214
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016886 B = 0.002989 C = 0.002673
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.820070 B = 9365.359835 C =10472.422152
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.029 4.029
3 C 0.207 3.793
4 N -0.486 5.486
5 C 0.079 3.921
6 C -0.080 4.080
7 C -0.109 4.109
8 C 0.602 3.398
9 O -0.501 6.501
10 N -0.597 5.597
11 C 0.098 3.902
12 C -0.132 4.132
13 C -0.102 4.102
14 C -0.087 4.087
15 C -0.128 4.128
16 C 0.179 3.821
17 N -0.604 5.604
18 C -0.229 4.229
19 H 0.077 0.923
20 C -0.007 4.007
21 N -0.918 5.918
22 Si 0.910 3.090
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.282 1.282
26 C 0.149 3.851
27 C 0.135 3.865
28 O -0.182 6.182
29 H 0.064 0.936
30 H 0.061 0.939
31 H 0.074 0.926
32 H 0.096 0.904
33 H 0.108 0.892
34 H 0.082 0.918
35 H 0.075 0.925
36 H 0.096 0.904
37 H 0.069 0.931
38 H 0.095 0.905
39 H 0.072 0.928
40 H 0.068 0.932
41 H 0.061 0.939
42 H 0.067 0.933
43 H 0.054 0.946
44 H 0.055 0.945
45 H 0.039 0.961
46 H 0.048 0.952
47 H 0.251 0.749
48 H 0.038 0.962
49 H 0.022 0.978
50 H 0.108 0.892
51 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.873 -21.779 4.012 25.127
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.067 4.067
3 C 0.002 3.998
4 N -0.216 5.216
5 C -0.045 4.045
6 C -0.137 4.137
7 C -0.164 4.164
8 C 0.388 3.612
9 O -0.377 6.377
10 N -0.329 5.329
11 C -0.025 4.025
12 C -0.170 4.170
13 C -0.140 4.140
14 C -0.089 4.089
15 C -0.166 4.166
16 C 0.054 3.946
17 N -0.331 5.331
18 C -0.357 4.357
19 H 0.095 0.905
20 C -0.204 4.204
21 N -0.566 5.566
22 Si 0.741 3.259
23 H -0.216 1.216
24 H -0.218 1.218
25 H -0.208 1.208
26 C 0.022 3.978
27 C 0.015 3.985
28 O -0.070 6.070
29 H 0.083 0.917
30 H 0.080 0.920
31 H 0.093 0.907
32 H 0.114 0.886
33 H 0.126 0.874
34 H 0.101 0.899
35 H 0.094 0.906
36 H 0.114 0.886
37 H 0.087 0.913
38 H 0.113 0.887
39 H 0.090 0.910
40 H 0.087 0.913
41 H 0.080 0.920
42 H 0.086 0.914
43 H 0.073 0.927
44 H 0.074 0.926
45 H 0.057 0.943
46 H 0.066 0.934
47 H 0.062 0.938
48 H 0.056 0.944
49 H 0.040 0.960
50 H 0.126 0.874
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -11.714 -21.205 4.902 24.717
hybrid contribution 0.191 1.060 -0.943 1.432
sum -11.523 -20.145 3.959 23.543
Atomic orbital electron populations
1.21788 0.92798 1.03130 1.03169 1.20158 0.97059 0.84010 1.05482
1.26638 0.97108 0.96738 0.79324 1.70324 1.17510 1.03748 1.29982
1.22062 0.97194 0.93909 0.91329 1.20377 1.02925 0.93065 0.97343
1.23080 1.12177 0.85938 0.95174 1.16472 0.78222 0.85142 0.81339
1.90936 1.49926 1.23942 1.72923 1.48030 1.70112 1.09490 1.05315
1.22084 0.98479 0.83896 0.97996 1.21922 0.98129 0.98791 0.98134
1.21333 1.01945 0.93614 0.97092 1.21460 0.95517 0.95273 0.96608
1.22826 0.95056 1.00467 0.98289 1.21160 0.96288 0.85520 0.91618
1.44511 1.55330 1.03215 1.30001 1.19016 1.25233 0.81750 1.09739
0.90542 1.24797 0.99806 0.98061 0.97690 1.69979 1.35001 1.33281
1.18318 0.86152 0.77005 0.85233 0.77554 1.21623 1.21758 1.20791
1.21411 0.95154 0.88500 0.92715 1.21539 0.96587 0.88485 0.91933
1.84612 1.63914 1.22265 1.36217 0.91655 0.91999 0.90696 0.88575
0.87410 0.89930 0.90571 0.88580 0.91321 0.88705 0.90963 0.91305
0.92044 0.91395 0.92720 0.92603 0.94296 0.93359 0.93813 0.94358
0.96025 0.87379 0.91697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16
2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.36 16
3 C 0.21 2.23 7.57 -12.79 -0.10 2.13 16
4 N -0.49 -6.38 11.26 -7.07 -0.08 -6.46 16
5 C 0.08 1.13 7.16 -82.47 -0.59 0.54 16
6 C -0.08 -1.04 9.80 36.00 0.35 -0.69 16
7 C -0.11 -1.60 6.80 -36.84 -0.25 -1.85 16
8 C 0.60 10.15 7.65 -12.83 -0.10 10.05 16
9 O -0.50 -10.09 14.35 5.20 0.07 -10.02 16
10 N -0.60 -9.12 2.60 -174.72 -0.45 -9.57 16
11 C 0.10 1.14 6.12 -3.70 -0.02 1.12 16
12 C -0.13 -1.47 5.92 -26.54 -0.16 -1.62 16
13 C -0.10 -1.32 4.65 -27.12 -0.13 -1.45 16
14 C -0.09 -1.48 0.56 -153.97 -0.09 -1.56 16
15 C -0.13 -2.49 4.92 -25.13 -0.12 -2.61 16
16 C 0.18 4.50 4.95 -2.95 -0.01 4.48 16
17 N -0.60 -15.53 3.39 -170.31 -0.58 -16.11 16
18 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16
19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16
20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16
21 N -0.92 -27.81 10.30 55.49 0.57 -27.24 16
22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16
23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
26 C 0.15 3.03 6.15 -2.87 -0.02 3.01 16
27 C 0.14 2.34 5.08 -4.11 -0.02 2.32 16
28 O -0.18 -2.21 7.45 4.43 0.03 -2.17 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16
32 H 0.10 0.39 8.14 -51.92 -0.42 -0.04 16
33 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
36 H 0.10 1.41 6.66 -51.93 -0.35 1.06 16
37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
38 H 0.10 1.06 4.24 -52.79 -0.22 0.83 16
39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16
40 H 0.07 0.86 7.42 -51.93 -0.39 0.47 16
41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
42 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16
43 H 0.05 1.00 7.99 -51.93 -0.41 0.58 16
44 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16
45 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16
46 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16
47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16
48 H 0.04 0.75 8.01 -51.93 -0.42 0.34 16
49 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16
50 H 0.11 2.34 6.61 -51.93 -0.34 1.99 16
51 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16
LS Contribution 395.04 15.07 5.95 5.95
Total: -1.00 -33.70 395.04 -9.15 -42.85
By element:
Atomic # 1 Polarization: 7.30 SS G_CDS: -8.33 Total: -1.03 kcal
Atomic # 6 Polarization: 7.50 SS G_CDS: -1.32 Total: 6.18 kcal
Atomic # 7 Polarization: -58.84 SS G_CDS: -0.54 Total: -59.38 kcal
Atomic # 8 Polarization: -12.30 SS G_CDS: 0.11 Total: -12.19 kcal
Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -33.70 -9.15 -42.85 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054223974.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.334 kcal
(2) G-P(sol) polarization free energy of solvation -33.702 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.482 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds