Wall clock time and date at job start Wed Apr 1 2020 04:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47375 * 2 1 4 4 N 1.30619 * 125.42169 * 90.02587 * 3 2 1 5 5 C 1.33689 * 108.99656 * 179.70888 * 4 3 2 6 6 C 1.50694 * 126.27784 * 180.27069 * 5 4 3 7 7 C 1.36342 * 107.44847 * 0.43098 * 5 4 3 8 8 C 1.46728 * 126.64180 * 179.83822 * 7 5 4 9 9 O 1.21687 * 119.99877 * 352.25764 * 8 7 5 10 10 N 1.34775 * 120.00115 * 172.25359 * 8 7 5 11 11 C 1.46949 * 120.71857 * 352.84336 * 10 8 7 12 12 C 1.53187 * 108.89754 * 234.30435 * 11 10 8 13 13 C 1.53176 * 109.27720 * 304.60833 * 12 11 10 14 14 C 1.52062 * 109.73119 * 59.93377 * 13 12 11 15 15 C 1.54584 * 110.68042 * 64.30793 * 14 13 12 16 16 C 1.54473 * 102.76202 * 152.61527 * 15 14 13 17 17 N 1.47084 * 107.42426 * 338.69928 * 16 15 14 18 18 C 1.36934 * 125.62935 * 178.94703 * 17 16 15 19 19 H 1.07997 * 120.00420 * 179.97438 * 18 17 16 20 20 C 1.38815 * 119.99854 * 359.97438 * 18 17 16 21 21 N 1.31616 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99990 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47197 * 90.00019 * 22 20 18 24 24 H 1.48503 * 109.46727 * 209.99935 * 22 20 18 25 25 H 1.48500 * 109.46784 * 329.99470 * 22 20 18 26 26 C 1.47570 * 108.74596 * 358.92465 * 17 16 15 27 27 C 1.47102 * 120.72034 * 172.81115 * 10 8 7 28 28 O 1.33663 * 125.42217 * 270.00065 * 3 2 1 29 29 H 1.09000 * 109.46701 * 299.99778 * 1 2 3 30 30 H 1.09007 * 109.47183 * 59.99842 * 1 2 3 31 31 H 1.08997 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47140 * 239.99720 * 2 1 3 33 33 H 1.09001 * 109.47153 * 120.00590 * 2 1 3 34 34 H 1.09005 * 109.46960 * 270.19460 * 6 5 4 35 35 H 1.08999 * 109.47184 * 30.18660 * 6 5 4 36 36 H 1.08995 * 109.47626 * 150.18830 * 6 5 4 37 37 H 1.08998 * 109.56881 * 114.47926 * 11 10 8 38 38 H 1.09001 * 109.66149 * 354.18410 * 11 10 8 39 39 H 1.09011 * 109.50345 * 184.67172 * 12 11 10 40 40 H 1.09003 * 109.54172 * 64.57581 * 12 11 10 41 41 H 1.09000 * 109.42975 * 299.85364 * 13 12 11 42 42 H 1.08999 * 109.38573 * 179.97438 * 13 12 11 43 43 H 1.09000 * 110.70574 * 34.34688 * 15 14 13 44 44 H 1.08996 * 110.86318 * 270.96116 * 15 14 13 45 45 H 1.08998 * 109.88014 * 219.19826 * 16 15 14 46 46 H 1.09000 * 109.87557 * 98.19583 * 16 15 14 47 47 H 0.97006 * 120.00108 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.38221 * 142.11974 * 26 17 16 49 49 H 1.09000 * 110.37753 * 264.47184 * 26 17 16 50 50 H 1.09006 * 109.56381 * 7.98307 * 27 10 8 51 51 H 1.08993 * 109.57206 * 247.62346 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2852 2.1344 1.0644 5 6 2.7186 3.3412 0.6864 6 6 3.1262 4.4686 1.5995 7 6 2.7208 3.3663 -0.6768 8 6 3.1186 4.4909 -1.5313 9 8 3.3583 5.5762 -1.0360 10 7 3.2185 4.3216 -2.8646 11 6 3.0866 2.9863 -3.4638 12 6 4.3208 2.7056 -4.3266 13 6 4.4829 3.8269 -5.3575 14 6 4.6547 5.1589 -4.6444 15 6 5.9628 5.1725 -3.8208 16 6 6.3284 6.6730 -3.7858 17 7 5.6386 7.3208 -4.9118 18 6 5.6882 8.6548 -5.2167 19 1 5.1443 9.0346 -6.0689 20 6 6.4377 9.5191 -4.4304 21 7 7.1002 9.0563 -3.3915 22 14 6.5048 11.3391 -4.8459 23 1 5.4065 12.0484 -4.1417 24 1 7.8114 11.8974 -4.4143 25 1 6.3499 11.5181 -6.3119 26 6 4.8848 6.2957 -5.6592 27 6 3.4614 5.4697 -3.7517 28 8 2.2906 2.1512 -1.0892 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2567 5.0863 1.8246 35 1 3.5298 4.0585 2.5253 36 1 3.8867 5.0764 1.1094 37 1 2.1915 2.9517 -4.0848 38 1 3.0137 2.2365 -2.6761 39 1 4.1957 1.7530 -4.8418 40 1 5.2067 2.6629 -3.6929 41 1 3.5975 3.8669 -5.9920 42 1 5.3610 3.6291 -5.9722 43 1 6.7406 4.5976 -4.3233 44 1 5.7912 4.7936 -2.8133 45 1 7.4063 6.7944 -3.8921 46 1 5.9969 7.1133 -2.8454 47 1 7.6237 9.6603 -2.8418 48 1 3.9312 6.6989 -6.0000 49 1 5.4699 5.9360 -6.5056 50 1 3.6743 6.3552 -3.1527 51 1 2.5805 5.6472 -4.3685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054223974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:42 Heat of formation + Delta-G solvation = -8.438133 kcal Electronic energy + Delta-G solvation = -32367.432500 eV Core-core repulsion = 28268.219815 eV Total energy + Delta-G solvation = -4099.212685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.62808 -41.60291 -39.75930 -37.56675 -36.42117 -35.18857 -34.75929 -33.33380 -32.03219 -31.50185 -30.44179 -29.21212 -27.41252 -26.79589 -25.48808 -25.38777 -23.14375 -22.99521 -22.33832 -22.02398 -21.23525 -19.74435 -18.67438 -18.45915 -18.14097 -17.42188 -17.10524 -16.82478 -16.53610 -15.87070 -15.74650 -15.64238 -15.27575 -15.17705 -14.80782 -14.65657 -14.37536 -14.27600 -14.05132 -13.91563 -13.82694 -13.58198 -13.55510 -13.35828 -13.28491 -12.96342 -12.78041 -12.61247 -12.43108 -12.20612 -12.14452 -12.06975 -12.01814 -11.95969 -11.85480 -11.70682 -11.56738 -11.34605 -11.15312 -11.09570 -10.70960 -10.10486 -9.64261 -8.88833 -7.83791 -5.19640 -0.33745 1.15727 1.26391 1.42719 1.45998 1.54153 1.81877 1.96583 2.49100 2.78279 3.33509 3.37429 3.55356 3.59024 3.68379 3.80506 3.88675 4.02343 4.08335 4.16214 4.21343 4.23279 4.29129 4.37762 4.48111 4.54899 4.58459 4.60348 4.64567 4.68100 4.73694 4.79685 4.86122 4.87466 4.96521 4.98153 5.00553 5.03642 5.07938 5.10977 5.18566 5.22069 5.35217 5.40724 5.43718 5.45898 5.48895 5.64702 5.76810 6.14864 6.19509 6.47469 6.85383 7.09477 7.78606 8.43597 9.26625 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.002989 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.820070 B = 9365.359835 C =10472.422152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C 0.228 3.772 4 N -0.510 5.510 5 C 0.074 3.926 6 C -0.078 4.078 7 C -0.130 4.130 8 C 0.596 3.404 9 O -0.552 6.552 10 N -0.594 5.594 11 C 0.093 3.907 12 C -0.125 4.125 13 C -0.096 4.096 14 C -0.071 4.071 15 C -0.110 4.110 16 C 0.193 3.807 17 N -0.625 5.625 18 C -0.238 4.238 19 H 0.087 0.913 20 C -0.072 4.072 21 N -0.954 5.954 22 Si 0.978 3.022 23 H -0.289 1.289 24 H -0.296 1.296 25 H -0.263 1.263 26 C 0.143 3.857 27 C 0.142 3.858 28 O -0.175 6.175 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.049 0.951 45 H -0.001 1.001 46 H -0.004 1.004 47 H 0.243 0.757 48 H 0.048 0.952 49 H 0.037 0.963 50 H 0.053 0.947 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 -25.601 1.946 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.067 4.067 3 C 0.023 3.977 4 N -0.239 5.239 5 C -0.050 4.050 6 C -0.135 4.135 7 C -0.184 4.184 8 C 0.384 3.616 9 O -0.432 6.432 10 N -0.325 5.325 11 C -0.027 4.027 12 C -0.163 4.163 13 C -0.134 4.134 14 C -0.073 4.073 15 C -0.149 4.149 16 C 0.067 3.933 17 N -0.351 5.351 18 C -0.367 4.367 19 H 0.105 0.895 20 C -0.265 4.265 21 N -0.603 5.603 22 Si 0.806 3.194 23 H -0.216 1.216 24 H -0.223 1.223 25 H -0.188 1.188 26 C 0.018 3.982 27 C 0.019 3.981 28 O -0.063 6.063 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.068 0.932 45 H 0.017 0.983 46 H 0.014 0.986 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.055 0.945 50 H 0.072 0.928 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.730 -25.087 2.783 28.734 hybrid contribution 0.735 2.141 -0.274 2.280 sum -12.995 -22.946 2.510 26.490 Atomic orbital electron populations 1.21792 0.91929 1.04637 1.02231 1.20581 0.97524 0.80906 1.07700 1.27817 0.93843 0.97713 0.78338 1.70378 1.19023 1.03468 1.31037 1.22266 0.96637 0.94585 0.91516 1.20331 1.02516 0.92929 0.97723 1.22529 1.14503 0.86637 0.94763 1.16774 0.77695 0.85178 0.81963 1.90910 1.52219 1.26115 1.73964 1.48101 1.69232 1.10500 1.04663 1.22412 1.00029 0.81681 0.98590 1.21926 0.97029 0.99904 0.97425 1.21333 1.03681 0.90906 0.97444 1.21392 0.93592 0.96970 0.95330 1.22606 0.97271 0.96030 0.98951 1.20781 0.93730 0.89170 0.89583 1.44799 1.56027 1.03678 1.30592 1.19490 1.24346 0.83297 1.09557 0.89505 1.25711 1.00186 1.02648 0.97931 1.70244 1.36159 1.34328 1.19595 0.85078 0.76369 0.79746 0.78165 1.21644 1.22294 1.18753 1.21682 0.94928 0.88252 0.93359 1.21274 0.97533 0.87666 0.91580 1.84595 1.63999 1.21286 1.36465 0.93158 0.92412 0.87965 0.85580 0.85919 0.89442 0.88843 0.90948 0.88712 0.87872 0.86754 0.92837 0.89418 0.90439 0.90840 0.93188 0.98273 0.98555 0.94748 0.93363 0.94511 0.92810 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 71.98 0.71 -0.30 16 2 C -0.03 -0.23 6.56 29.85 0.20 -0.04 16 3 C 0.23 4.36 7.57 88.29 0.67 5.03 16 4 N -0.51 -12.84 11.26 -291.07 -3.28 -16.11 16 5 C 0.07 2.14 7.16 41.83 0.30 2.44 16 6 C -0.08 -2.15 9.80 71.23 0.70 -1.46 16 7 C -0.13 -3.82 6.80 24.05 0.16 -3.65 16 8 C 0.60 20.92 7.65 86.46 0.66 21.58 16 9 O -0.55 -24.27 14.35 -4.31 -0.06 -24.34 16 10 N -0.59 -17.85 2.60 -824.91 -2.14 -19.99 16 11 C 0.09 1.85 6.12 86.36 0.53 2.38 16 12 C -0.12 -2.23 5.92 30.72 0.18 -2.05 16 13 C -0.10 -2.08 4.65 30.34 0.14 -1.94 16 14 C -0.07 -2.35 0.56 -51.83 -0.03 -2.38 16 15 C -0.11 -4.39 4.92 31.63 0.16 -4.23 16 16 C 0.19 10.37 4.95 86.77 0.43 10.80 16 17 N -0.62 -33.26 3.39 -692.75 -2.35 -35.60 16 18 C -0.24 -13.81 10.28 84.03 0.86 -12.95 16 19 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 20 C -0.07 -4.34 5.49 84.86 0.47 -3.87 16 21 N -0.95 -61.54 10.30 21.65 0.22 -61.32 16 22 Si 0.98 48.09 29.55 68.60 2.03 50.12 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 24 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 25 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 26 C 0.14 5.68 6.15 86.55 0.53 6.22 16 27 C 0.14 4.93 5.08 86.01 0.44 5.36 16 28 O -0.18 -3.87 7.45 -7.07 -0.05 -3.92 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 2.35 6.66 -2.39 -0.02 2.34 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.93 4.24 -16.05 -0.07 1.87 16 39 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.05 1.15 7.42 -2.39 -0.02 1.14 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 43 H 0.07 2.64 7.99 -2.39 -0.02 2.62 16 44 H 0.05 2.04 7.70 -2.39 -0.02 2.02 16 45 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16 46 H 0.00 -0.24 7.37 -2.39 -0.02 -0.26 16 47 H 0.24 15.34 8.31 -92.70 -0.77 14.57 16 48 H 0.05 1.83 8.01 -2.39 -0.02 1.81 16 49 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16 50 H 0.05 2.49 6.61 -2.38 -0.02 2.48 16 51 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16 Total: -1.00 -81.80 395.04 2.34 -79.45 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.87 Total: 10.77 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 7.11 Total: 20.94 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -7.54 Total: -133.03 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.11 Total: -28.26 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -81.80 2.34 -79.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054223974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.016 kcal (2) G-P(sol) polarization free energy of solvation -81.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds