Wall clock time and date at job start Wed Apr 1 2020 04:25:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50699 * 109.47375 * 2 1
4 4 N 1.30619 * 125.42169 * 90.02587 * 3 2 1
5 5 C 1.33689 * 108.99656 * 179.70888 * 4 3 2
6 6 C 1.50694 * 126.27784 * 180.27069 * 5 4 3
7 7 C 1.36342 * 107.44847 * 0.43098 * 5 4 3
8 8 C 1.46728 * 126.64180 * 179.83822 * 7 5 4
9 9 O 1.21687 * 119.99877 * 352.25764 * 8 7 5
10 10 N 1.34775 * 120.00115 * 172.25359 * 8 7 5
11 11 C 1.46949 * 120.71857 * 352.84336 * 10 8 7
12 12 C 1.53187 * 108.89754 * 234.30435 * 11 10 8
13 13 C 1.53176 * 109.27720 * 304.60833 * 12 11 10
14 14 C 1.52062 * 109.73119 * 59.93377 * 13 12 11
15 15 C 1.54584 * 110.68042 * 64.30793 * 14 13 12
16 16 C 1.54473 * 102.76202 * 152.61527 * 15 14 13
17 17 N 1.47084 * 107.42426 * 338.69928 * 16 15 14
18 18 C 1.36934 * 125.62935 * 178.94703 * 17 16 15
19 19 H 1.07997 * 120.00420 * 179.97438 * 18 17 16
20 20 C 1.38815 * 119.99854 * 359.97438 * 18 17 16
21 21 N 1.31616 * 119.99961 * 359.97438 * 20 18 17
22 22 Si 1.86807 * 119.99990 * 180.02562 * 20 18 17
23 23 H 1.48500 * 109.47197 * 90.00019 * 22 20 18
24 24 H 1.48503 * 109.46727 * 209.99935 * 22 20 18
25 25 H 1.48500 * 109.46784 * 329.99470 * 22 20 18
26 26 C 1.47570 * 108.74596 * 358.92465 * 17 16 15
27 27 C 1.47102 * 120.72034 * 172.81115 * 10 8 7
28 28 O 1.33663 * 125.42217 * 270.00065 * 3 2 1
29 29 H 1.09000 * 109.46701 * 299.99778 * 1 2 3
30 30 H 1.09007 * 109.47183 * 59.99842 * 1 2 3
31 31 H 1.08997 * 109.47175 * 179.97438 * 1 2 3
32 32 H 1.09007 * 109.47140 * 239.99720 * 2 1 3
33 33 H 1.09001 * 109.47153 * 120.00590 * 2 1 3
34 34 H 1.09005 * 109.46960 * 270.19460 * 6 5 4
35 35 H 1.08999 * 109.47184 * 30.18660 * 6 5 4
36 36 H 1.08995 * 109.47626 * 150.18830 * 6 5 4
37 37 H 1.08998 * 109.56881 * 114.47926 * 11 10 8
38 38 H 1.09001 * 109.66149 * 354.18410 * 11 10 8
39 39 H 1.09011 * 109.50345 * 184.67172 * 12 11 10
40 40 H 1.09003 * 109.54172 * 64.57581 * 12 11 10
41 41 H 1.09000 * 109.42975 * 299.85364 * 13 12 11
42 42 H 1.08999 * 109.38573 * 179.97438 * 13 12 11
43 43 H 1.09000 * 110.70574 * 34.34688 * 15 14 13
44 44 H 1.08996 * 110.86318 * 270.96116 * 15 14 13
45 45 H 1.08998 * 109.88014 * 219.19826 * 16 15 14
46 46 H 1.09000 * 109.87557 * 98.19583 * 16 15 14
47 47 H 0.97006 * 120.00108 * 180.02562 * 21 20 18
48 48 H 1.09001 * 110.38221 * 142.11974 * 26 17 16
49 49 H 1.09000 * 110.37753 * 264.47184 * 26 17 16
50 50 H 1.09006 * 109.56381 * 7.98307 * 27 10 8
51 51 H 1.08993 * 109.57206 * 247.62346 * 27 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2852 2.1344 1.0644
5 6 2.7186 3.3412 0.6864
6 6 3.1262 4.4686 1.5995
7 6 2.7208 3.3663 -0.6768
8 6 3.1186 4.4909 -1.5313
9 8 3.3583 5.5762 -1.0360
10 7 3.2185 4.3216 -2.8646
11 6 3.0866 2.9863 -3.4638
12 6 4.3208 2.7056 -4.3266
13 6 4.4829 3.8269 -5.3575
14 6 4.6547 5.1589 -4.6444
15 6 5.9628 5.1725 -3.8208
16 6 6.3284 6.6730 -3.7858
17 7 5.6386 7.3208 -4.9118
18 6 5.6882 8.6548 -5.2167
19 1 5.1443 9.0346 -6.0689
20 6 6.4377 9.5191 -4.4304
21 7 7.1002 9.0563 -3.3915
22 14 6.5048 11.3391 -4.8459
23 1 5.4065 12.0484 -4.1417
24 1 7.8114 11.8974 -4.4143
25 1 6.3499 11.5181 -6.3119
26 6 4.8848 6.2957 -5.6592
27 6 3.4614 5.4697 -3.7517
28 8 2.2906 2.1512 -1.0892
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 2.2567 5.0863 1.8246
35 1 3.5298 4.0585 2.5253
36 1 3.8867 5.0764 1.1094
37 1 2.1915 2.9517 -4.0848
38 1 3.0137 2.2365 -2.6761
39 1 4.1957 1.7530 -4.8418
40 1 5.2067 2.6629 -3.6929
41 1 3.5975 3.8669 -5.9920
42 1 5.3610 3.6291 -5.9722
43 1 6.7406 4.5976 -4.3233
44 1 5.7912 4.7936 -2.8133
45 1 7.4063 6.7944 -3.8921
46 1 5.9969 7.1133 -2.8454
47 1 7.6237 9.6603 -2.8418
48 1 3.9312 6.6989 -6.0000
49 1 5.4699 5.9360 -6.5056
50 1 3.6743 6.3552 -3.1527
51 1 2.5805 5.6472 -4.3685
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054223974.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:25:42
Heat of formation + Delta-G solvation = -8.438133 kcal
Electronic energy + Delta-G solvation = -32367.432500 eV
Core-core repulsion = 28268.219815 eV
Total energy + Delta-G solvation = -4099.212685 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-44.62808 -41.60291 -39.75930 -37.56675 -36.42117 -35.18857 -34.75929 -33.33380
-32.03219 -31.50185 -30.44179 -29.21212 -27.41252 -26.79589 -25.48808 -25.38777
-23.14375 -22.99521 -22.33832 -22.02398 -21.23525 -19.74435 -18.67438 -18.45915
-18.14097 -17.42188 -17.10524 -16.82478 -16.53610 -15.87070 -15.74650 -15.64238
-15.27575 -15.17705 -14.80782 -14.65657 -14.37536 -14.27600 -14.05132 -13.91563
-13.82694 -13.58198 -13.55510 -13.35828 -13.28491 -12.96342 -12.78041 -12.61247
-12.43108 -12.20612 -12.14452 -12.06975 -12.01814 -11.95969 -11.85480 -11.70682
-11.56738 -11.34605 -11.15312 -11.09570 -10.70960 -10.10486 -9.64261 -8.88833
-7.83791 -5.19640 -0.33745 1.15727 1.26391 1.42719 1.45998 1.54153
1.81877 1.96583 2.49100 2.78279 3.33509 3.37429 3.55356 3.59024
3.68379 3.80506 3.88675 4.02343 4.08335 4.16214 4.21343 4.23279
4.29129 4.37762 4.48111 4.54899 4.58459 4.60348 4.64567 4.68100
4.73694 4.79685 4.86122 4.87466 4.96521 4.98153 5.00553 5.03642
5.07938 5.10977 5.18566 5.22069 5.35217 5.40724 5.43718 5.45898
5.48895 5.64702 5.76810 6.14864 6.19509 6.47469 6.85383 7.09477
7.78606 8.43597 9.26625
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016886 B = 0.002989 C = 0.002673
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1657.820070 B = 9365.359835 C =10472.422152
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.029 4.029
3 C 0.228 3.772
4 N -0.510 5.510
5 C 0.074 3.926
6 C -0.078 4.078
7 C -0.130 4.130
8 C 0.596 3.404
9 O -0.552 6.552
10 N -0.594 5.594
11 C 0.093 3.907
12 C -0.125 4.125
13 C -0.096 4.096
14 C -0.071 4.071
15 C -0.110 4.110
16 C 0.193 3.807
17 N -0.625 5.625
18 C -0.238 4.238
19 H 0.087 0.913
20 C -0.072 4.072
21 N -0.954 5.954
22 Si 0.978 3.022
23 H -0.289 1.289
24 H -0.296 1.296
25 H -0.263 1.263
26 C 0.143 3.857
27 C 0.142 3.858
28 O -0.175 6.175
29 H 0.049 0.951
30 H 0.057 0.943
31 H 0.102 0.898
32 H 0.126 0.874
33 H 0.123 0.877
34 H 0.087 0.913
35 H 0.093 0.907
36 H 0.072 0.928
37 H 0.095 0.905
38 H 0.104 0.896
39 H 0.114 0.886
40 H 0.053 0.947
41 H 0.087 0.913
42 H 0.077 0.923
43 H 0.073 0.927
44 H 0.049 0.951
45 H -0.001 1.001
46 H -0.004 1.004
47 H 0.243 0.757
48 H 0.048 0.952
49 H 0.037 0.963
50 H 0.053 0.947
51 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.857 -25.601 1.946 29.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.067 4.067
3 C 0.023 3.977
4 N -0.239 5.239
5 C -0.050 4.050
6 C -0.135 4.135
7 C -0.184 4.184
8 C 0.384 3.616
9 O -0.432 6.432
10 N -0.325 5.325
11 C -0.027 4.027
12 C -0.163 4.163
13 C -0.134 4.134
14 C -0.073 4.073
15 C -0.149 4.149
16 C 0.067 3.933
17 N -0.351 5.351
18 C -0.367 4.367
19 H 0.105 0.895
20 C -0.265 4.265
21 N -0.603 5.603
22 Si 0.806 3.194
23 H -0.216 1.216
24 H -0.223 1.223
25 H -0.188 1.188
26 C 0.018 3.982
27 C 0.019 3.981
28 O -0.063 6.063
29 H 0.068 0.932
30 H 0.076 0.924
31 H 0.120 0.880
32 H 0.144 0.856
33 H 0.141 0.859
34 H 0.106 0.894
35 H 0.112 0.888
36 H 0.091 0.909
37 H 0.113 0.887
38 H 0.121 0.879
39 H 0.132 0.868
40 H 0.072 0.928
41 H 0.106 0.894
42 H 0.096 0.904
43 H 0.092 0.908
44 H 0.068 0.932
45 H 0.017 0.983
46 H 0.014 0.986
47 H 0.053 0.947
48 H 0.066 0.934
49 H 0.055 0.945
50 H 0.072 0.928
51 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -13.730 -25.087 2.783 28.734
hybrid contribution 0.735 2.141 -0.274 2.280
sum -12.995 -22.946 2.510 26.490
Atomic orbital electron populations
1.21792 0.91929 1.04637 1.02231 1.20581 0.97524 0.80906 1.07700
1.27817 0.93843 0.97713 0.78338 1.70378 1.19023 1.03468 1.31037
1.22266 0.96637 0.94585 0.91516 1.20331 1.02516 0.92929 0.97723
1.22529 1.14503 0.86637 0.94763 1.16774 0.77695 0.85178 0.81963
1.90910 1.52219 1.26115 1.73964 1.48101 1.69232 1.10500 1.04663
1.22412 1.00029 0.81681 0.98590 1.21926 0.97029 0.99904 0.97425
1.21333 1.03681 0.90906 0.97444 1.21392 0.93592 0.96970 0.95330
1.22606 0.97271 0.96030 0.98951 1.20781 0.93730 0.89170 0.89583
1.44799 1.56027 1.03678 1.30592 1.19490 1.24346 0.83297 1.09557
0.89505 1.25711 1.00186 1.02648 0.97931 1.70244 1.36159 1.34328
1.19595 0.85078 0.76369 0.79746 0.78165 1.21644 1.22294 1.18753
1.21682 0.94928 0.88252 0.93359 1.21274 0.97533 0.87666 0.91580
1.84595 1.63999 1.21286 1.36465 0.93158 0.92412 0.87965 0.85580
0.85919 0.89442 0.88843 0.90948 0.88712 0.87872 0.86754 0.92837
0.89418 0.90439 0.90840 0.93188 0.98273 0.98555 0.94748 0.93363
0.94511 0.92810 0.89716
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.01 9.89 71.98 0.71 -0.30 16
2 C -0.03 -0.23 6.56 29.85 0.20 -0.04 16
3 C 0.23 4.36 7.57 88.29 0.67 5.03 16
4 N -0.51 -12.84 11.26 -291.07 -3.28 -16.11 16
5 C 0.07 2.14 7.16 41.83 0.30 2.44 16
6 C -0.08 -2.15 9.80 71.23 0.70 -1.46 16
7 C -0.13 -3.82 6.80 24.05 0.16 -3.65 16
8 C 0.60 20.92 7.65 86.46 0.66 21.58 16
9 O -0.55 -24.27 14.35 -4.31 -0.06 -24.34 16
10 N -0.59 -17.85 2.60 -824.91 -2.14 -19.99 16
11 C 0.09 1.85 6.12 86.36 0.53 2.38 16
12 C -0.12 -2.23 5.92 30.72 0.18 -2.05 16
13 C -0.10 -2.08 4.65 30.34 0.14 -1.94 16
14 C -0.07 -2.35 0.56 -51.83 -0.03 -2.38 16
15 C -0.11 -4.39 4.92 31.63 0.16 -4.23 16
16 C 0.19 10.37 4.95 86.77 0.43 10.80 16
17 N -0.62 -33.26 3.39 -692.75 -2.35 -35.60 16
18 C -0.24 -13.81 10.28 84.03 0.86 -12.95 16
19 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16
20 C -0.07 -4.34 5.49 84.86 0.47 -3.87 16
21 N -0.95 -61.54 10.30 21.65 0.22 -61.32 16
22 Si 0.98 48.09 29.55 68.60 2.03 50.12 16
23 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16
24 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16
25 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16
26 C 0.14 5.68 6.15 86.55 0.53 6.22 16
27 C 0.14 4.93 5.08 86.01 0.44 5.36 16
28 O -0.18 -3.87 7.45 -7.07 -0.05 -3.92 16
29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16
30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16
31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16
32 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16
33 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16
34 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16
35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16
36 H 0.07 2.35 6.66 -2.39 -0.02 2.34 16
37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
38 H 0.10 1.93 4.24 -16.05 -0.07 1.87 16
39 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16
40 H 0.05 1.15 7.42 -2.39 -0.02 1.14 16
41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
42 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16
43 H 0.07 2.64 7.99 -2.39 -0.02 2.62 16
44 H 0.05 2.04 7.70 -2.39 -0.02 2.02 16
45 H 0.00 -0.06 7.50 -2.39 -0.02 -0.08 16
46 H 0.00 -0.24 7.37 -2.39 -0.02 -0.26 16
47 H 0.24 15.34 8.31 -92.70 -0.77 14.57 16
48 H 0.05 1.83 8.01 -2.39 -0.02 1.81 16
49 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16
50 H 0.05 2.49 6.61 -2.38 -0.02 2.48 16
51 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16
Total: -1.00 -81.80 395.04 2.34 -79.45
By element:
Atomic # 1 Polarization: 9.90 SS G_CDS: 0.87 Total: 10.77 kcal
Atomic # 6 Polarization: 13.84 SS G_CDS: 7.11 Total: 20.94 kcal
Atomic # 7 Polarization: -125.49 SS G_CDS: -7.54 Total: -133.03 kcal
Atomic # 8 Polarization: -28.14 SS G_CDS: -0.11 Total: -28.26 kcal
Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal
Total: -81.80 2.34 -79.45 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054223974.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.016 kcal
(2) G-P(sol) polarization free energy of solvation -81.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.780 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.454 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.438 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds