Wall clock time and date at job start Wed Apr 1 2020 05:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47271 * 2 1 4 4 C 1.50704 * 109.47235 * 119.99764 * 2 1 3 5 5 O 1.34261 * 126.52491 * 300.18839 * 4 2 1 6 6 C 1.34049 * 108.22444 * 180.26474 * 5 4 2 7 7 N 1.29933 * 109.24571 * 359.73577 * 6 5 4 8 8 C 1.36069 * 108.47340 * 359.97438 * 7 6 5 9 9 C 1.47423 * 126.44436 * 179.97438 * 8 7 6 10 10 O 1.21610 * 119.99664 * 186.35349 * 9 8 7 11 11 N 1.34778 * 120.00230 * 6.35675 * 9 8 7 12 12 C 1.46941 * 120.71865 * 175.91756 * 11 9 8 13 13 C 1.53190 * 108.89935 * 234.30485 * 12 11 9 14 14 C 1.53180 * 109.27846 * 304.61270 * 13 12 11 15 15 C 1.52067 * 109.72756 * 59.93246 * 14 13 12 16 16 C 1.54576 * 110.68174 * 64.31284 * 15 14 13 17 17 C 1.54472 * 102.76264 * 152.61467 * 16 15 14 18 18 N 1.47090 * 107.42425 * 338.69581 * 17 16 15 19 19 C 1.36933 * 125.62816 * 178.95394 * 18 17 16 20 20 H 1.08002 * 120.00115 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00107 * 359.96961 * 19 18 17 22 22 N 1.31621 * 119.99771 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46990 * 89.99743 * 23 21 19 25 25 H 1.48501 * 109.47071 * 209.99804 * 23 21 19 26 26 H 1.48497 * 109.47163 * 329.99738 * 23 21 19 27 27 C 1.47575 * 108.74035 * 358.92444 * 18 17 16 28 28 C 1.47102 * 120.71507 * 355.89595 * 11 9 8 29 29 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47374 * 300.00542 * 1 2 3 31 31 H 1.09006 * 109.47479 * 60.00134 * 1 2 3 32 32 H 1.08998 * 109.47582 * 240.00154 * 2 1 3 33 33 H 1.08995 * 109.47473 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46760 * 300.00306 * 3 2 1 35 35 H 1.09003 * 109.47364 * 59.99452 * 3 2 1 36 36 H 1.08003 * 125.37217 * 179.70342 * 6 5 4 37 37 H 1.08995 * 109.56721 * 114.47919 * 12 11 9 38 38 H 1.08999 * 109.66181 * 354.18473 * 12 11 9 39 39 H 1.09003 * 109.50346 * 184.67424 * 13 12 11 40 40 H 1.08995 * 109.53847 * 64.57743 * 13 12 11 41 41 H 1.08998 * 109.43131 * 299.85237 * 14 13 12 42 42 H 1.09003 * 109.38445 * 179.97438 * 14 13 12 43 43 H 1.08998 * 110.70801 * 34.33862 * 16 15 14 44 44 H 1.09002 * 110.85734 * 270.95282 * 16 15 14 45 45 H 1.08997 * 109.87724 * 219.19640 * 17 16 15 46 46 H 1.08997 * 109.87735 * 98.18858 * 17 16 15 47 47 H 0.97001 * 119.99402 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.37069 * 142.12437 * 27 18 17 49 49 H 1.08998 * 110.37949 * 264.46558 * 27 18 17 50 50 H 1.08999 * 109.56917 * 7.96702 * 28 11 9 51 51 H 1.09001 * 109.56503 * 247.61900 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7872 -0.3698 2.5059 6 6 2.4158 -1.2461 3.3020 7 7 3.0372 -2.1210 2.5695 8 6 2.8174 -1.8215 1.2605 9 6 3.3384 -2.5575 0.0943 10 8 3.1647 -2.1209 -1.0274 11 7 4.0070 -3.7143 0.2711 12 6 4.4553 -4.5061 -0.8826 13 6 3.9219 -5.9352 -0.7411 14 6 4.3670 -6.5099 0.6072 15 6 3.8214 -5.6504 1.7368 16 6 2.2767 -5.7009 1.7642 17 6 1.9528 -5.4325 3.2505 18 7 3.1560 -5.7614 4.0299 19 6 3.2848 -5.6399 5.3878 20 1 4.2137 -5.9091 5.8684 21 6 2.2214 -5.1705 6.1465 22 7 1.0892 -4.8427 5.5609 23 14 2.3973 -5.0040 7.9988 24 1 2.9073 -3.6486 8.3277 25 1 1.0738 -5.2044 8.6417 26 1 3.3507 -6.0266 8.4994 27 6 4.2013 -6.2447 3.1071 28 6 4.3042 -4.2112 1.6234 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.4074 -1.2274 4.3819 37 1 5.5447 -4.5244 -0.9117 38 1 4.0730 -4.0632 -1.8023 39 1 4.3167 -6.5526 -1.5480 40 1 2.8331 -5.9244 -0.7906 41 1 5.4558 -6.5223 0.6545 42 1 3.9879 -7.5267 0.7100 43 1 1.9179 -6.6849 1.4626 44 1 1.8517 -4.9229 1.1300 45 1 1.1218 -6.0622 3.5683 46 1 1.6965 -4.3823 3.3901 47 1 0.3463 -4.5143 6.0911 48 1 5.1806 -5.8822 3.4197 49 1 4.1951 -7.3338 3.0633 50 1 3.7898 -3.5943 2.3603 51 1 5.3793 -4.1719 1.7987 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054225434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:06 Heat of formation + Delta-G solvation = 20.295922 kcal Electronic energy + Delta-G solvation = -33509.468618 eV Core-core repulsion = 29411.501935 eV Total energy + Delta-G solvation = -4097.966683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.26207 -40.12603 -38.28640 -35.87845 -35.40047 -34.69060 -32.86172 -31.97037 -29.85522 -29.41762 -28.55263 -27.28543 -25.82588 -25.51015 -23.91892 -23.27777 -23.19190 -21.59194 -20.51816 -20.01048 -19.52563 -18.27833 -17.18912 -16.68460 -16.53329 -16.31674 -15.67476 -15.07784 -14.93935 -14.74824 -14.65092 -14.33464 -13.92787 -13.73619 -13.66201 -13.32384 -13.23842 -13.06535 -12.73284 -12.50277 -12.32453 -12.16428 -11.90278 -11.65098 -11.57795 -11.35759 -11.26011 -11.14102 -11.02032 -10.94740 -10.89782 -10.75178 -10.67692 -10.09535 -9.95223 -9.91978 -9.85009 -9.65744 -9.52423 -9.04078 -8.77680 -8.52644 -8.27883 -6.73257 -5.64338 -2.96502 1.29982 2.32646 2.75842 3.20384 3.39710 3.46783 3.47756 3.53925 4.27996 4.53271 4.54970 4.73730 4.91789 4.98409 5.08254 5.10803 5.21756 5.29665 5.34955 5.47464 5.49566 5.58915 5.59417 5.61381 5.68582 5.71995 5.78648 5.84575 5.86333 5.94897 5.99313 6.04547 6.10304 6.10630 6.16156 6.19976 6.27339 6.29417 6.42621 6.45560 6.61292 6.64659 6.74479 6.88710 6.94785 7.32365 7.57124 7.64029 7.76225 7.86210 7.92972 8.32890 8.34721 9.29075 9.89623 10.57758 11.46604 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.005100 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.751427 B = 5488.598549 C = 7733.555446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C -0.144 4.144 4 C 0.041 3.959 5 O -0.198 6.198 6 C 0.193 3.807 7 N -0.439 5.439 8 C -0.072 4.072 9 C 0.606 3.394 10 O -0.553 6.553 11 N -0.587 5.587 12 C 0.111 3.889 13 C -0.131 4.131 14 C -0.104 4.104 15 C -0.083 4.083 16 C -0.128 4.128 17 C 0.183 3.817 18 N -0.600 5.600 19 C -0.217 4.217 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.283 1.283 27 C 0.149 3.851 28 C 0.079 3.921 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.255 0.745 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.052 0.948 47 H 0.249 0.751 48 H 0.037 0.963 49 H 0.019 0.981 50 H 0.172 0.828 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 7.542 -12.394 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.044 4.044 3 C -0.202 4.202 4 C -0.016 4.016 5 O -0.084 6.084 6 C -0.034 4.034 7 N -0.166 5.166 8 C -0.191 4.191 9 C 0.394 3.606 10 O -0.433 6.433 11 N -0.317 5.317 12 C -0.011 4.011 13 C -0.169 4.169 14 C -0.142 4.142 15 C -0.084 4.084 16 C -0.167 4.167 17 C 0.058 3.942 18 N -0.326 5.326 19 C -0.346 4.346 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.569 5.569 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.042 4.042 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.270 0.730 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.037 0.963 50 H 0.188 0.812 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.998 7.336 -12.541 14.835 hybrid contribution -0.271 0.204 1.188 1.236 sum 2.727 7.540 -11.352 13.898 Atomic orbital electron populations 1.21860 0.93383 1.02720 1.02464 1.20229 0.96531 0.96181 0.91492 1.21834 1.01534 0.94352 1.02442 1.23576 0.97990 0.95776 0.84282 1.84354 1.58907 1.49182 1.16004 1.28297 0.91583 0.84612 0.98922 1.70409 1.22095 1.23408 1.00706 1.21415 1.06544 0.98872 0.92288 1.16781 0.77299 0.80326 0.86154 1.90665 1.60327 1.68316 1.23970 1.47972 1.54150 1.20853 1.08690 1.21591 0.98815 0.91229 0.89489 1.21908 1.01753 0.95332 0.97925 1.21364 1.00170 0.98958 0.93748 1.21408 0.96767 0.94725 0.95543 1.22804 0.93942 0.99615 1.00327 1.21122 0.88940 0.99977 0.84157 1.44452 1.09666 1.76106 1.02354 1.19035 0.98226 1.36409 0.80916 0.90703 1.24708 0.96121 1.02013 0.97513 1.70002 1.03158 1.50576 1.33213 0.86222 0.76641 0.77748 0.85774 1.21804 1.21924 1.20894 1.21399 0.92965 0.95549 0.87843 1.22950 1.00929 0.96624 0.83728 0.92077 0.92184 0.91416 0.85126 0.92262 0.91421 0.92268 0.72966 0.91730 0.89405 0.91196 0.91431 0.92277 0.91782 0.93037 0.93038 0.94828 0.93034 0.94095 0.94466 0.96337 0.81218 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.17 37.15 0.34 -1.26 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.62 16 3 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16 4 C 0.04 0.62 5.94 -35.08 -0.21 0.41 16 5 O -0.20 -2.93 10.73 6.50 0.07 -2.86 16 6 C 0.19 3.02 13.19 51.96 0.69 3.70 16 7 N -0.44 -7.90 7.68 -11.48 -0.09 -7.99 16 8 C -0.07 -1.24 6.75 -83.02 -0.56 -1.80 16 9 C 0.61 10.62 7.69 -12.52 -0.10 10.53 16 10 O -0.55 -9.91 13.93 5.27 0.07 -9.84 16 11 N -0.59 -9.66 2.60 -174.47 -0.45 -10.11 16 12 C 0.11 1.52 6.40 -3.70 -0.02 1.50 16 13 C -0.13 -1.67 5.92 -26.54 -0.16 -1.83 16 14 C -0.10 -1.49 4.65 -27.11 -0.13 -1.62 16 15 C -0.08 -1.46 0.56 -153.97 -0.09 -1.55 16 16 C -0.13 -2.53 4.92 -25.13 -0.12 -2.66 16 17 C 0.18 4.42 4.95 -2.95 -0.01 4.40 16 18 N -0.60 -14.87 3.39 -170.31 -0.58 -15.44 16 19 C -0.22 -5.86 10.28 -15.06 -0.15 -6.01 16 20 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -25.97 10.31 55.49 0.57 -25.40 16 23 Si 0.90 21.46 29.55 -169.99 -5.02 16.43 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 C 0.15 3.07 6.15 -2.87 -0.02 3.05 16 28 C 0.08 1.41 4.94 -4.11 -0.02 1.39 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.13 1.81 5.55 -51.93 -0.29 1.52 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.25 3.28 8.06 -52.48 -0.42 2.86 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.20 7.03 -51.93 -0.37 0.84 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.95 7.42 -51.93 -0.39 0.56 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.05 0.97 7.99 -51.93 -0.41 0.56 16 44 H 0.05 1.02 7.70 -51.93 -0.40 0.63 16 45 H 0.03 0.92 7.50 -51.93 -0.39 0.53 16 46 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 47 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.04 0.75 8.01 -51.93 -0.42 0.33 16 49 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 50 H 0.17 3.39 3.27 -78.36 -0.26 3.14 16 51 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -30.80 392.45 -8.46 -39.26 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.33 Total: 3.85 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: -0.61 Total: 6.19 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.55 Total: -58.95 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.14 Total: -12.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.80 -8.46 -39.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054225434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.553 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds