Wall clock time and date at job start Wed Apr 1 2020 05:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47271 * 2 1 4 4 C 1.50704 * 109.47235 * 119.99764 * 2 1 3 5 5 O 1.34261 * 126.52491 * 300.18839 * 4 2 1 6 6 C 1.34049 * 108.22444 * 180.26474 * 5 4 2 7 7 N 1.29933 * 109.24571 * 359.73577 * 6 5 4 8 8 C 1.36069 * 108.47340 * 359.97438 * 7 6 5 9 9 C 1.47423 * 126.44436 * 179.97438 * 8 7 6 10 10 O 1.21610 * 119.99664 * 186.35349 * 9 8 7 11 11 N 1.34778 * 120.00230 * 6.35675 * 9 8 7 12 12 C 1.46941 * 120.71865 * 175.91756 * 11 9 8 13 13 C 1.53190 * 108.89935 * 234.30485 * 12 11 9 14 14 C 1.53180 * 109.27846 * 304.61270 * 13 12 11 15 15 C 1.52067 * 109.72756 * 59.93246 * 14 13 12 16 16 C 1.54576 * 110.68174 * 64.31284 * 15 14 13 17 17 C 1.54472 * 102.76264 * 152.61467 * 16 15 14 18 18 N 1.47090 * 107.42425 * 338.69581 * 17 16 15 19 19 C 1.36933 * 125.62816 * 178.95394 * 18 17 16 20 20 H 1.08002 * 120.00115 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00107 * 359.96961 * 19 18 17 22 22 N 1.31621 * 119.99771 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00117 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46990 * 89.99743 * 23 21 19 25 25 H 1.48501 * 109.47071 * 209.99804 * 23 21 19 26 26 H 1.48497 * 109.47163 * 329.99738 * 23 21 19 27 27 C 1.47575 * 108.74035 * 358.92444 * 18 17 16 28 28 C 1.47102 * 120.71507 * 355.89595 * 11 9 8 29 29 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47374 * 300.00542 * 1 2 3 31 31 H 1.09006 * 109.47479 * 60.00134 * 1 2 3 32 32 H 1.08998 * 109.47582 * 240.00154 * 2 1 3 33 33 H 1.08995 * 109.47473 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46760 * 300.00306 * 3 2 1 35 35 H 1.09003 * 109.47364 * 59.99452 * 3 2 1 36 36 H 1.08003 * 125.37217 * 179.70342 * 6 5 4 37 37 H 1.08995 * 109.56721 * 114.47919 * 12 11 9 38 38 H 1.08999 * 109.66181 * 354.18473 * 12 11 9 39 39 H 1.09003 * 109.50346 * 184.67424 * 13 12 11 40 40 H 1.08995 * 109.53847 * 64.57743 * 13 12 11 41 41 H 1.08998 * 109.43131 * 299.85237 * 14 13 12 42 42 H 1.09003 * 109.38445 * 179.97438 * 14 13 12 43 43 H 1.08998 * 110.70801 * 34.33862 * 16 15 14 44 44 H 1.09002 * 110.85734 * 270.95282 * 16 15 14 45 45 H 1.08997 * 109.87724 * 219.19640 * 17 16 15 46 46 H 1.08997 * 109.87735 * 98.18858 * 17 16 15 47 47 H 0.97001 * 119.99402 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.37069 * 142.12437 * 27 18 17 49 49 H 1.08998 * 110.37949 * 264.46558 * 27 18 17 50 50 H 1.08999 * 109.56917 * 7.96702 * 28 11 9 51 51 H 1.09001 * 109.56503 * 247.61900 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.7872 -0.3698 2.5059 6 6 2.4158 -1.2461 3.3020 7 7 3.0372 -2.1210 2.5695 8 6 2.8174 -1.8215 1.2605 9 6 3.3384 -2.5575 0.0943 10 8 3.1647 -2.1209 -1.0274 11 7 4.0070 -3.7143 0.2711 12 6 4.4553 -4.5061 -0.8826 13 6 3.9219 -5.9352 -0.7411 14 6 4.3670 -6.5099 0.6072 15 6 3.8214 -5.6504 1.7368 16 6 2.2767 -5.7009 1.7642 17 6 1.9528 -5.4325 3.2505 18 7 3.1560 -5.7614 4.0299 19 6 3.2848 -5.6399 5.3878 20 1 4.2137 -5.9091 5.8684 21 6 2.2214 -5.1705 6.1465 22 7 1.0892 -4.8427 5.5609 23 14 2.3973 -5.0040 7.9988 24 1 2.9073 -3.6486 8.3277 25 1 1.0738 -5.2044 8.6417 26 1 3.3507 -6.0266 8.4994 27 6 4.2013 -6.2447 3.1071 28 6 4.3042 -4.2112 1.6234 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.4074 -1.2274 4.3819 37 1 5.5447 -4.5244 -0.9117 38 1 4.0730 -4.0632 -1.8023 39 1 4.3167 -6.5526 -1.5480 40 1 2.8331 -5.9244 -0.7906 41 1 5.4558 -6.5223 0.6545 42 1 3.9879 -7.5267 0.7100 43 1 1.9179 -6.6849 1.4626 44 1 1.8517 -4.9229 1.1300 45 1 1.1218 -6.0622 3.5683 46 1 1.6965 -4.3823 3.3901 47 1 0.3463 -4.5143 6.0911 48 1 5.1806 -5.8822 3.4197 49 1 4.1951 -7.3338 3.0633 50 1 3.7898 -3.5943 2.3603 51 1 5.3793 -4.1719 1.7987 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054225434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:05 Heat of formation + Delta-G solvation = 2.456789 kcal Electronic energy + Delta-G solvation = -33510.242181 eV Core-core repulsion = 29411.501935 eV Total energy + Delta-G solvation = -4098.740246 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.49041 -41.47535 -39.74337 -37.25262 -36.58019 -35.92908 -34.54165 -33.37517 -31.53819 -30.64842 -30.28187 -28.12640 -27.35251 -26.95926 -25.52619 -24.62009 -24.39662 -22.81834 -22.05454 -21.41392 -20.88707 -19.69257 -18.71401 -18.26790 -17.79278 -17.59068 -16.93060 -16.72165 -16.40249 -16.00132 -15.84685 -15.75827 -15.56727 -15.09407 -14.87082 -14.67433 -14.46385 -14.12028 -13.96214 -13.86038 -13.83164 -13.51548 -13.25811 -13.11062 -12.99039 -12.71718 -12.67795 -12.45110 -12.32210 -12.24735 -12.12552 -12.09617 -12.02453 -11.95007 -11.69527 -11.57122 -11.29096 -11.20733 -11.08972 -10.59323 -10.36580 -10.01826 -9.54514 -8.75493 -7.72210 -5.06392 0.07241 1.04614 1.50346 1.51841 1.57275 1.59604 1.96587 2.23764 2.56679 3.04375 3.44561 3.45216 3.55545 3.75319 3.76789 3.91723 3.94417 4.05156 4.07290 4.12530 4.23162 4.29792 4.40234 4.53227 4.55856 4.62123 4.67061 4.69924 4.71966 4.80428 4.85875 4.86025 4.90670 4.91171 4.93482 5.04065 5.07369 5.08231 5.10970 5.20574 5.25709 5.30143 5.37045 5.44678 5.53493 5.56281 5.76107 5.90657 5.96409 6.26501 6.29993 6.57867 7.04727 7.21561 7.88950 8.55800 9.37373 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.005100 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.751427 B = 5488.598549 C = 7733.555446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C -0.138 4.138 4 C 0.050 3.950 5 O -0.193 6.193 6 C 0.190 3.810 7 N -0.466 5.466 8 C -0.103 4.103 9 C 0.599 3.401 10 O -0.563 6.563 11 N -0.586 5.586 12 C 0.106 3.894 13 C -0.123 4.123 14 C -0.100 4.100 15 C -0.069 4.069 16 C -0.113 4.113 17 C 0.197 3.803 18 N -0.615 5.615 19 C -0.231 4.231 20 H 0.078 0.922 21 C -0.056 4.056 22 N -0.946 5.946 23 Si 0.968 3.032 24 H -0.283 1.283 25 H -0.301 1.301 26 H -0.276 1.276 27 C 0.145 3.855 28 C 0.079 3.921 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.046 0.954 45 H -0.010 1.010 46 H 0.026 0.974 47 H 0.243 0.757 48 H 0.042 0.958 49 H 0.025 0.975 50 H 0.153 0.847 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.000 7.708 -13.642 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.008 4.008 5 O -0.079 6.079 6 C -0.038 4.038 7 N -0.193 5.193 8 C -0.222 4.222 9 C 0.388 3.612 10 O -0.444 6.444 11 N -0.316 5.316 12 C -0.015 4.015 13 C -0.161 4.161 14 C -0.138 4.138 15 C -0.071 4.071 16 C -0.151 4.151 17 C 0.072 3.928 18 N -0.341 5.341 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.249 4.249 22 N -0.595 5.595 23 Si 0.797 3.203 24 H -0.209 1.209 25 H -0.228 1.228 26 H -0.201 1.201 27 C 0.019 3.981 28 C -0.043 4.043 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.136 0.864 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.287 0.713 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.008 0.992 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.043 0.957 50 H 0.170 0.830 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.173 7.481 -13.813 16.254 hybrid contribution -0.628 0.150 1.585 1.711 sum 3.545 7.632 -12.229 14.844 Atomic orbital electron populations 1.21852 0.92059 1.02128 1.03965 1.20366 0.97539 0.97171 0.89463 1.21816 1.01062 0.92763 1.03920 1.24166 0.96570 0.95064 0.84985 1.84368 1.58687 1.48885 1.15953 1.28698 0.91155 0.84313 0.99600 1.70386 1.23223 1.24335 1.01394 1.21603 1.08220 1.00152 0.92185 1.16900 0.77440 0.80712 0.86128 1.90646 1.60913 1.68686 1.24166 1.48009 1.53849 1.20784 1.08935 1.21833 1.00067 0.91274 0.88322 1.21876 1.00936 0.95111 0.98128 1.21353 1.01267 0.98377 0.92820 1.21319 0.94835 0.95427 0.95483 1.22597 0.95909 0.99764 0.96845 1.20788 0.87769 0.97386 0.86853 1.44657 1.10887 1.76142 1.02413 1.19370 0.98341 1.36014 0.82290 0.90388 1.25414 0.95915 1.02207 1.01379 1.70216 1.03625 1.51388 1.34294 0.85241 0.76067 0.77992 0.80978 1.20942 1.22788 1.20150 1.21580 0.92098 0.95812 0.88561 1.22785 1.00913 0.96298 0.84337 0.93704 0.91883 0.88713 0.86374 0.92986 0.88929 0.91793 0.71271 0.89694 0.89417 0.87644 0.92885 0.90298 0.91119 0.92137 0.93483 0.99208 0.95593 0.94798 0.93932 0.95719 0.83049 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.17 71.98 0.66 -2.29 16 2 C -0.03 -0.65 3.24 -11.54 -0.04 -0.69 16 3 C -0.14 -2.59 9.18 71.98 0.66 -1.93 16 4 C 0.05 1.52 5.94 25.19 0.15 1.66 16 5 O -0.19 -5.77 10.73 0.35 0.00 -5.76 16 6 C 0.19 6.10 13.19 130.52 1.72 7.83 16 7 N -0.47 -17.30 7.68 -305.15 -2.34 -19.64 16 8 C -0.10 -3.64 6.75 40.41 0.27 -3.37 16 9 C 0.60 21.04 7.69 86.66 0.67 21.71 16 10 O -0.56 -20.06 13.93 -4.06 -0.06 -20.12 16 11 N -0.59 -18.79 2.60 -824.15 -2.14 -20.93 16 12 C 0.11 2.65 6.40 86.36 0.55 3.20 16 13 C -0.12 -2.75 5.92 30.72 0.18 -2.57 16 14 C -0.10 -2.56 4.65 30.35 0.14 -2.42 16 15 C -0.07 -2.36 0.56 -51.83 -0.03 -2.39 16 16 C -0.11 -4.47 4.92 31.63 0.16 -4.31 16 17 C 0.20 9.88 4.95 86.77 0.43 10.31 16 18 N -0.62 -30.98 3.39 -692.73 -2.35 -33.33 16 19 C -0.23 -12.61 10.28 84.03 0.86 -11.75 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 21 C -0.06 -3.09 5.49 84.86 0.47 -2.62 16 22 N -0.95 -55.09 10.31 21.65 0.22 -54.87 16 23 Si 0.97 44.62 29.55 68.60 2.03 46.64 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.15 5.86 6.15 86.55 0.53 6.39 16 28 C 0.08 2.76 4.94 86.01 0.43 3.18 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.12 3.22 5.55 -2.39 -0.01 3.21 16 33 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.27 7.26 8.06 -2.91 -0.02 7.23 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 2.22 7.03 -2.39 -0.02 2.21 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.36 7.42 -2.39 -0.02 1.35 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 43 H 0.06 2.27 7.99 -2.39 -0.02 2.25 16 44 H 0.05 1.90 7.70 -2.39 -0.02 1.88 16 45 H -0.01 -0.60 7.50 -2.39 -0.02 -0.61 16 46 H 0.03 1.42 7.38 -2.39 -0.02 1.41 16 47 H 0.24 13.86 8.31 -92.71 -0.77 13.08 16 48 H 0.04 1.67 8.01 -2.39 -0.02 1.65 16 49 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 50 H 0.15 6.14 3.27 -54.57 -0.18 5.96 16 51 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 Total: -1.00 -68.30 392.45 3.93 -64.37 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.75 Total: 23.70 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 7.81 Total: 19.94 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -6.61 Total: -128.77 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -68.30 3.93 -64.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054225434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.826 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds