Wall clock time and date at job start Wed Apr 1 2020 05:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47204 * 2 1 4 4 C 1.50700 * 109.47158 * 179.97438 * 3 2 1 5 5 N 1.29941 * 125.38077 * 90.29692 * 4 3 2 6 6 C 1.36063 * 108.48195 * 180.16687 * 5 4 3 7 7 C 1.47417 * 126.45130 * 179.82499 * 6 5 4 8 8 O 1.21610 * 120.00118 * 172.50290 * 7 6 5 9 9 N 1.34772 * 120.00086 * 352.50087 * 7 6 5 10 10 C 1.46950 * 120.71953 * 352.83865 * 9 7 6 11 11 C 1.53192 * 108.90168 * 234.31050 * 10 9 7 12 12 C 1.53187 * 109.26983 * 304.60553 * 11 10 9 13 13 C 1.52062 * 109.73088 * 59.93806 * 12 11 10 14 14 C 1.54586 * 110.68240 * 64.30334 * 13 12 11 15 15 C 1.54471 * 102.75847 * 152.61766 * 14 13 12 16 16 N 1.47086 * 107.42863 * 338.69488 * 15 14 13 17 17 C 1.36930 * 125.63135 * 178.95241 * 16 15 14 18 18 H 1.07998 * 120.00261 * 179.97438 * 17 16 15 19 19 C 1.38813 * 119.99796 * 359.97145 * 17 16 15 20 20 N 1.31615 * 120.00102 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99974 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47177 * 90.00256 * 21 19 17 23 23 H 1.48504 * 109.47372 * 210.00219 * 21 19 17 24 24 H 1.48502 * 109.47172 * 330.00492 * 21 19 17 25 25 C 1.47575 * 108.73915 * 358.93008 * 16 15 14 26 26 C 1.47094 * 120.72299 * 172.81182 * 9 7 6 27 27 C 1.36089 * 107.09841 * 359.56186 * 6 5 4 28 28 O 1.34049 * 125.38158 * 269.97740 * 4 3 2 29 29 H 1.09001 * 109.47053 * 60.00312 * 1 2 3 30 30 H 1.08996 * 109.47007 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47090 * 300.00305 * 1 2 3 32 32 H 1.09003 * 109.47491 * 239.99609 * 2 1 3 33 33 H 1.09004 * 109.47146 * 120.00209 * 2 1 3 34 34 H 1.08991 * 109.47346 * 59.99851 * 3 2 1 35 35 H 1.09003 * 109.47168 * 299.99369 * 3 2 1 36 36 H 1.08996 * 109.56708 * 114.47787 * 10 9 7 37 37 H 1.09005 * 109.65795 * 354.18686 * 10 9 7 38 38 H 1.09004 * 109.49924 * 184.67439 * 11 10 9 39 39 H 1.08988 * 109.54083 * 64.57074 * 11 10 9 40 40 H 1.08993 * 109.43414 * 299.85484 * 12 11 10 41 41 H 1.09002 * 109.38222 * 179.97438 * 12 11 10 42 42 H 1.08996 * 110.70436 * 34.34681 * 14 13 12 43 43 H 1.08998 * 110.85775 * 270.96164 * 14 13 12 44 44 H 1.09000 * 109.87343 * 219.19538 * 15 14 13 45 45 H 1.08995 * 109.87941 * 98.19866 * 15 14 13 46 46 H 0.97006 * 120.00244 * 179.97438 * 20 19 17 47 47 H 1.09000 * 110.37484 * 142.11733 * 25 16 15 48 48 H 1.09005 * 110.37910 * 264.46535 * 25 16 15 49 49 H 1.09005 * 109.56247 * 7.98004 * 26 9 7 50 50 H 1.08991 * 109.57234 * 247.62425 * 26 9 7 51 51 H 1.08008 * 126.52733 * 180.28526 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.2998 1.4478 -1.0585 6 6 5.6015 1.4420 -0.6624 7 6 6.7846 1.4415 -1.5419 8 8 7.8960 1.5735 -1.0662 9 7 6.6346 1.2947 -2.8732 10 6 5.3206 0.9784 -3.4502 11 6 5.4492 -0.2769 -4.3188 12 6 6.5427 -0.0555 -5.3685 13 6 7.8688 0.2217 -4.6779 14 6 8.3293 -1.0102 -3.8656 15 6 9.8665 -0.8581 -3.8572 16 7 10.2294 0.0102 -4.9876 17 6 11.4990 0.4061 -5.3139 18 1 11.6621 1.0474 -6.1674 19 6 12.5764 -0.0168 -4.5475 20 7 12.3776 -0.7987 -3.5076 21 14 14.3082 0.5238 -4.9922 22 1 14.6261 1.7933 -4.2901 23 1 15.2754 -0.5252 -4.5804 24 1 14.4001 0.7333 -6.4595 25 6 8.9994 0.3839 -5.7124 26 6 7.7823 1.4482 -3.7802 27 6 5.6057 1.4428 0.6984 28 8 4.3227 1.4430 1.0939 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8901 36 1 4.9805 1.8132 -4.0630 37 1 4.6029 0.7967 -2.6501 38 1 4.5001 -0.4729 -4.8177 39 1 5.7135 -1.1284 -3.6919 40 1 6.2760 0.7948 -5.9961 41 1 6.6360 -0.9479 -5.9874 42 1 8.0356 -1.9332 -4.3655 43 1 7.9327 -0.9765 -2.8509 44 1 10.3361 -1.8347 -3.9744 45 1 10.1887 -0.4020 -2.9212 46 1 13.1306 -1.0946 -2.9723 47 1 9.0581 1.4181 -6.0515 48 1 8.8390 -0.2851 -6.5579 49 1 8.6988 1.5390 -3.1971 50 1 7.6473 2.3398 -4.3924 51 1 6.4756 1.4435 1.3386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054226886.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:13 Heat of formation + Delta-G solvation = -8.094785 kcal Electronic energy + Delta-G solvation = -31879.624619 eV Core-core repulsion = 27780.426823 eV Total energy + Delta-G solvation = -4099.197796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.54772 -41.56481 -39.70920 -37.39013 -36.41303 -35.78655 -34.65807 -33.26795 -31.82791 -31.47331 -30.41543 -28.21189 -27.61876 -26.93308 -25.45118 -24.43935 -23.28042 -22.99255 -22.18673 -21.99407 -20.80209 -19.69145 -18.68342 -18.52139 -17.94156 -17.66662 -17.05721 -16.82037 -16.54493 -15.96586 -15.88746 -15.72997 -15.64280 -15.13930 -15.02113 -14.67365 -14.49685 -14.15382 -14.04502 -14.01348 -13.84290 -13.50249 -13.36351 -13.01137 -12.97713 -12.77870 -12.74333 -12.62278 -12.38114 -12.16914 -12.07103 -12.04702 -11.98075 -11.84948 -11.64911 -11.56554 -11.51953 -11.39841 -11.10680 -10.73046 -10.66990 -10.13827 -9.61257 -8.89941 -7.84469 -5.20607 0.02160 0.88967 1.41885 1.45630 1.51658 1.53837 1.87589 2.14560 2.48567 2.75007 3.33239 3.48302 3.60137 3.69297 3.73884 3.83322 3.95607 4.07687 4.13051 4.16950 4.25408 4.27780 4.35353 4.46278 4.49308 4.55095 4.59210 4.69553 4.72369 4.76509 4.79896 4.83956 4.87632 4.90870 4.98019 4.98485 5.02942 5.10009 5.21168 5.24591 5.31780 5.32326 5.43744 5.44957 5.48371 5.50845 5.63832 5.67240 5.75436 6.18392 6.26169 6.48677 7.01164 7.08512 7.77396 8.42965 9.26163 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019188 B = 0.002647 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.927511 B =10574.485280 C =11428.031608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.022 4.022 4 C 0.207 3.793 5 N -0.467 5.467 6 C -0.088 4.088 7 C 0.586 3.414 8 O -0.581 6.581 9 N -0.587 5.587 10 C 0.080 3.920 11 C -0.125 4.125 12 C -0.096 4.096 13 C -0.069 4.069 14 C -0.109 4.109 15 C 0.194 3.806 16 N -0.625 5.625 17 C -0.239 4.239 18 H 0.087 0.913 19 C -0.074 4.074 20 N -0.955 5.955 21 Si 0.980 3.020 22 H -0.289 1.289 23 H -0.295 1.295 24 H -0.263 1.263 25 C 0.143 3.857 26 C 0.140 3.860 27 C 0.023 3.977 28 O -0.191 6.191 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.000 1.000 45 H -0.005 1.005 46 H 0.244 0.756 47 H 0.046 0.954 48 H 0.037 0.963 49 H 0.050 0.950 50 H 0.078 0.922 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.547 3.564 5.664 31.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.060 4.060 4 C -0.001 4.001 5 N -0.197 5.197 6 C -0.207 4.207 7 C 0.374 3.626 8 O -0.461 6.461 9 N -0.317 5.317 10 C -0.041 4.041 11 C -0.163 4.163 12 C -0.134 4.134 13 C -0.071 4.071 14 C -0.148 4.148 15 C 0.068 3.932 16 N -0.351 5.351 17 C -0.368 4.368 18 H 0.105 0.895 19 C -0.266 4.266 20 N -0.604 5.604 21 Si 0.809 3.191 22 H -0.216 1.216 23 H -0.222 1.222 24 H -0.187 1.187 25 C 0.018 3.982 26 C 0.017 3.983 27 C -0.051 4.051 28 O -0.077 6.077 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.019 0.981 45 H 0.014 0.986 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -30.011 3.626 5.331 30.696 hybrid contribution 2.447 0.020 0.799 2.575 sum -27.564 3.646 6.130 28.472 Atomic orbital electron populations 1.21729 0.93227 1.02611 1.02991 1.21523 0.97595 0.94047 1.02685 1.20552 0.77733 1.00353 1.07371 1.27377 0.97671 0.97297 0.77780 1.70511 0.99951 1.19716 1.29562 1.21487 0.91816 1.13994 0.93366 1.17315 0.86415 0.76523 0.82313 1.90861 1.26722 1.53004 1.75551 1.48015 1.11385 1.67579 1.04739 1.22798 0.83252 0.97695 1.00384 1.21921 0.99949 0.97168 0.97218 1.21338 0.91512 1.02975 0.97591 1.21360 0.96415 0.94077 0.95259 1.22595 0.95272 0.97946 0.98956 1.20774 0.90690 0.92242 0.89453 1.44813 1.02293 1.57038 1.30996 1.19501 0.83090 1.24412 1.09753 0.89521 1.25744 1.02215 1.00666 0.97992 1.70250 1.29892 1.40046 1.20239 0.85045 0.79170 0.76740 0.78195 1.21599 1.22167 1.18733 1.21681 0.84909 0.98120 0.93528 1.21212 0.88368 0.97403 0.91317 1.25590 0.85582 0.98734 0.95241 1.84431 1.16210 1.69116 1.37983 0.91540 0.92216 0.91520 0.91836 0.91909 0.86441 0.85831 0.90455 0.84387 0.87429 0.93083 0.89887 0.90663 0.90882 0.93200 0.98146 0.98633 0.94700 0.93556 0.94551 0.93134 0.90415 0.73844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 71.98 0.71 0.07 16 2 C -0.12 -0.89 5.92 30.59 0.18 -0.71 16 3 C -0.02 -0.17 5.84 29.85 0.17 0.01 16 4 C 0.21 3.45 7.56 88.39 0.67 4.12 16 5 N -0.47 -10.32 7.85 -293.04 -2.30 -12.62 16 6 C -0.09 -2.45 6.67 40.41 0.27 -2.18 16 7 C 0.59 21.22 7.68 86.66 0.67 21.89 16 8 O -0.58 -26.46 16.34 -4.06 -0.07 -26.53 16 9 N -0.59 -19.22 2.60 -824.14 -2.14 -21.36 16 10 C 0.08 1.88 6.09 86.36 0.53 2.41 16 11 C -0.12 -2.65 5.92 30.72 0.18 -2.47 16 12 C -0.10 -2.39 4.65 30.35 0.14 -2.25 16 13 C -0.07 -2.47 0.56 -51.83 -0.03 -2.50 16 14 C -0.11 -4.56 4.92 31.63 0.16 -4.41 16 15 C 0.19 10.73 4.95 86.77 0.43 11.16 16 16 N -0.63 -34.33 3.39 -692.75 -2.35 -36.67 16 17 C -0.24 -14.16 10.28 84.03 0.86 -13.29 16 18 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 19 C -0.07 -4.50 5.49 84.86 0.47 -4.04 16 20 N -0.95 -62.44 10.30 21.65 0.22 -62.22 16 21 Si 0.98 48.72 29.55 68.60 2.03 50.75 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 24 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 25 C 0.14 5.99 6.15 86.55 0.53 6.52 16 26 C 0.14 5.26 5.08 86.01 0.44 5.70 16 27 C 0.02 0.51 11.95 67.32 0.80 1.32 16 28 O -0.19 -3.56 10.73 0.39 0.00 -3.56 16 29 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.14 3.14 4.12 -17.41 -0.07 3.07 16 38 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.05 1.26 7.42 -2.39 -0.02 1.24 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 42 H 0.07 2.76 7.99 -2.39 -0.02 2.74 16 43 H 0.05 2.13 7.70 -2.39 -0.02 2.11 16 44 H 0.00 0.02 7.50 -2.39 -0.02 0.00 16 45 H 0.00 -0.30 7.38 -2.39 -0.02 -0.32 16 46 H 0.24 15.52 8.31 -92.70 -0.77 14.75 16 47 H 0.05 1.86 8.01 -2.39 -0.02 1.84 16 48 H 0.04 1.45 8.00 -2.38 -0.02 1.43 16 49 H 0.05 2.48 6.61 -2.38 -0.02 2.46 16 50 H 0.08 2.64 8.12 -2.39 -0.02 2.62 16 51 H 0.25 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -82.58 398.23 3.44 -79.14 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.85 Total: 11.73 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 7.18 Total: 21.33 kcal Atomic # 7 Polarization: -126.30 SS G_CDS: -6.56 Total: -132.87 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.06 Total: -30.09 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.03 Total: 50.75 kcal Total: -82.58 3.44 -79.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054226886.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.047 kcal (2) G-P(sol) polarization free energy of solvation -82.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds