Wall clock time and date at job start Wed Apr 1 2020 04:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46979 * 2 1 4 4 C 1.50702 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.38019 * 119.51250 * 125.00092 * 4 3 2 6 6 C 1.39923 * 119.13392 * 180.02562 * 5 4 3 7 7 C 1.48167 * 120.89579 * 179.97438 * 6 5 4 8 8 O 1.21508 * 119.99511 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00290 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00418 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.51904 * 325.08437 * 10 9 7 12 12 C 1.53036 * 109.50076 * 205.00127 * 10 9 7 13 13 C 1.53037 * 109.53609 * 301.41360 * 12 10 9 14 14 C 1.53191 * 109.31049 * 298.63032 * 13 12 10 15 15 H 1.08994 * 109.58965 * 294.84975 * 14 13 12 16 16 C 1.53008 * 109.58504 * 174.56765 * 14 13 12 17 17 N 1.46924 * 108.89296 * 54.71015 * 14 13 12 18 18 C 1.36939 * 120.63390 * 126.32187 * 17 14 13 19 19 H 1.08003 * 119.99851 * 330.41276 * 18 17 14 20 20 C 1.38810 * 120.00557 * 150.40913 * 18 17 14 21 21 N 1.31624 * 119.99291 * 344.61845 * 20 18 17 22 22 Si 1.86796 * 120.00435 * 164.61477 * 20 18 17 23 23 H 1.48503 * 109.46912 * 90.00333 * 22 20 18 24 24 H 1.48493 * 109.47167 * 209.99924 * 22 20 18 25 25 H 1.48504 * 109.47069 * 330.00392 * 22 20 18 26 26 C 1.47204 * 118.55445 * 306.46180 * 17 14 13 27 27 C 1.39615 * 118.21469 * 0.25069 * 6 5 4 28 28 C 1.38850 * 118.95030 * 359.50152 * 27 6 5 29 29 O 1.35680 * 119.62675 * 180.25245 * 28 27 6 30 30 N 1.31874 * 119.51249 * 305.01746 * 4 3 2 31 31 H 1.09006 * 109.46934 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46967 * 299.99595 * 1 2 3 33 33 H 1.08991 * 109.47324 * 59.99938 * 1 2 3 34 34 H 1.08998 * 109.46642 * 239.99991 * 2 1 3 35 35 H 1.09003 * 109.46967 * 119.99947 * 2 1 3 36 36 H 1.08998 * 109.47441 * 60.00480 * 3 2 1 37 37 H 1.09003 * 109.47228 * 299.99787 * 3 2 1 38 38 H 1.08001 * 120.43465 * 0.04231 * 5 4 3 39 39 H 0.97005 * 119.99739 * 0.02562 * 9 7 6 40 40 H 1.08997 * 109.46331 * 181.38608 * 12 10 9 41 41 H 1.09004 * 109.45805 * 61.43275 * 12 10 9 42 42 H 1.08999 * 109.49674 * 178.68295 * 13 12 10 43 43 H 1.08997 * 109.50174 * 58.58837 * 13 12 10 44 44 H 1.09000 * 109.47277 * 60.28343 * 16 14 13 45 45 H 1.08999 * 109.46902 * 180.28734 * 16 14 13 46 46 H 1.08999 * 109.46927 * 300.28463 * 16 14 13 47 47 H 0.97004 * 119.99680 * 180.02562 * 21 20 18 48 48 H 1.09008 * 109.55887 * 293.69974 * 26 17 14 49 49 H 1.09005 * 109.64988 * 173.39626 * 26 17 14 50 50 H 1.08005 * 120.52437 * 179.75021 * 27 6 5 51 51 H 0.96706 * 114.00269 * 270.26063 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2265 2.1315 -0.9847 6 6 5.6257 2.1258 -0.9780 7 6 6.3944 2.8518 -2.0159 8 8 5.8100 3.4635 -2.8881 9 7 7.7419 2.8346 -1.9920 10 6 8.5020 3.5529 -3.0179 11 1 7.9707 3.5008 -3.9682 12 6 9.8846 2.9147 -3.1699 13 6 10.6186 2.9579 -1.8278 14 6 10.8042 4.4167 -1.3986 15 1 11.4642 4.9236 -2.1025 16 6 11.4151 4.4652 0.0033 17 7 9.4931 5.0799 -1.3878 18 6 9.0532 5.7378 -0.2703 19 1 9.3727 5.4124 0.7088 20 6 8.1967 6.8229 -0.3957 21 7 8.0447 7.4096 -1.5641 22 14 7.2598 7.4504 1.0935 23 1 8.0682 8.4853 1.7869 24 1 5.9705 8.0417 0.6541 25 1 6.9960 6.3230 2.0235 26 6 8.6635 5.0185 -2.6022 27 6 6.2780 1.4126 0.0295 28 6 5.5179 0.7507 0.9845 29 8 6.1377 0.0577 1.9727 30 7 4.1970 0.7838 0.9389 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.6853 2.6684 -1.7497 39 1 8.2084 2.3466 -1.2954 40 1 10.4585 3.4647 -3.9157 41 1 9.7730 1.8785 -3.4896 42 1 11.5939 2.4822 -1.9310 43 1 10.0332 2.4290 -1.0757 44 1 12.3853 3.9684 -0.0057 45 1 11.5416 5.5038 0.3088 46 1 10.7537 3.9579 0.7056 47 1 7.4465 8.1682 -1.6517 48 1 9.1490 5.5744 -3.4044 49 1 7.6837 5.4508 -2.3990 50 1 7.3569 1.3797 0.0678 51 1 6.3169 -0.8667 1.7522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071886289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:13 Heat of formation + Delta-G solvation = -31.884822 kcal Electronic energy + Delta-G solvation = -31879.389363 eV Core-core repulsion = 27779.159953 eV Total energy + Delta-G solvation = -4100.229410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.82702 -39.38150 -37.72207 -37.30197 -35.01070 -34.24071 -32.85983 -32.56474 -30.86099 -30.41299 -29.88485 -27.05232 -26.36871 -25.13443 -24.28943 -22.95365 -22.22338 -21.81622 -20.65067 -20.24253 -18.83715 -18.81249 -17.20698 -16.91124 -16.26750 -15.74525 -15.61590 -15.33016 -15.10919 -14.87614 -14.49290 -14.31408 -13.99860 -13.91100 -13.65881 -13.49751 -13.20970 -12.99451 -12.83159 -12.54842 -12.35743 -12.23286 -11.95068 -11.84372 -11.55591 -11.33393 -11.28014 -11.18632 -10.99872 -10.92272 -10.86418 -10.70605 -10.41567 -10.36560 -10.00141 -9.94583 -9.83980 -9.57830 -9.49604 -9.34278 -8.88620 -8.48753 -8.46177 -6.61426 -5.76553 -3.20510 0.73065 0.90143 3.01039 3.37648 3.43733 3.46287 3.46332 3.47241 3.84465 4.31041 4.49773 4.64508 4.84144 4.88102 4.94852 5.00865 5.07043 5.26287 5.27473 5.31452 5.37388 5.43476 5.46334 5.50132 5.55651 5.61105 5.62408 5.77866 5.85759 5.95251 5.99994 6.05762 6.07700 6.12591 6.15287 6.28136 6.31988 6.36008 6.39584 6.45937 6.55380 6.61727 6.81640 7.02099 7.08267 7.31363 7.34466 7.63979 7.79612 7.82835 7.93472 8.47240 8.58164 9.21777 9.86266 10.42699 11.31785 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003551 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.971236 B = 7883.834715 C = 8571.194475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.069 4.069 4 C 0.148 3.852 5 C -0.125 4.125 6 C -0.055 4.055 7 C 0.555 3.445 8 O -0.532 6.532 9 N -0.688 5.688 10 C 0.118 3.882 11 H 0.079 0.921 12 C -0.119 4.119 13 C -0.131 4.131 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.582 5.582 18 C -0.251 4.251 19 H 0.067 0.933 20 C 0.008 3.992 21 N -0.898 5.898 22 Si 0.893 3.107 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.161 3.839 27 C -0.158 4.158 28 C 0.310 3.690 29 O -0.478 6.478 30 N -0.489 5.489 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.151 0.849 39 H 0.395 0.605 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.253 0.747 48 H 0.028 0.972 49 H 0.095 0.905 50 H 0.144 0.856 51 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.084 -17.152 0.300 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.107 4.107 4 C 0.011 3.989 5 C -0.146 4.146 6 C -0.066 4.066 7 C 0.340 3.660 8 O -0.410 6.410 9 N -0.339 5.339 10 C 0.012 3.988 11 H 0.097 0.903 12 C -0.157 4.157 13 C -0.170 4.170 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.381 4.381 19 H 0.085 0.915 20 C -0.191 4.191 21 N -0.542 5.542 22 Si 0.723 3.277 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.035 3.965 27 C -0.180 4.180 28 C 0.131 3.869 29 O -0.284 6.284 30 N -0.209 5.209 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.169 0.831 39 H 0.231 0.769 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.114 0.886 50 H 0.161 0.839 51 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.991 -16.462 0.582 17.528 hybrid contribution 0.397 0.277 0.412 0.636 sum -5.594 -16.185 0.994 17.153 Atomic orbital electron populations 1.21786 0.95631 1.01660 1.01913 1.21434 0.95549 0.95570 1.02771 1.20632 0.87772 0.98591 1.03744 1.20916 0.96561 0.92286 0.89176 1.22135 0.93383 0.99010 1.00084 1.20456 0.94399 0.96303 0.95458 1.17934 0.82693 0.80876 0.84503 1.90761 1.69637 1.43378 1.37220 1.45779 1.05084 1.52001 1.30987 1.21862 0.90414 0.96115 0.90402 0.90347 1.21698 0.95837 0.99716 0.98436 1.22074 0.98871 0.99725 0.96363 1.20466 0.88420 0.90290 0.95029 0.95703 1.21799 0.98077 1.02038 0.97431 1.44086 1.12796 1.61341 1.12331 1.19046 1.25705 1.07282 0.86051 0.91496 1.25044 1.01732 0.96021 0.96304 1.69983 1.38930 1.22352 1.22924 0.86451 0.79749 0.78793 0.82740 1.21363 1.21568 1.20590 1.21220 0.98373 0.88646 0.88298 1.22292 1.01789 0.99825 0.94061 1.18903 0.86716 0.94210 0.87072 1.84839 1.77005 1.27616 1.38976 1.66726 1.09869 1.20250 1.24097 0.92719 0.92606 0.92654 0.92169 0.90884 0.89648 0.89760 0.83147 0.76862 0.90878 0.92965 0.92712 0.92862 0.94415 0.92007 0.92973 0.93661 0.95425 0.88639 0.83860 0.74507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -1.04 5.79 -26.73 -0.15 -1.19 16 3 C -0.07 -0.71 5.61 -27.89 -0.16 -0.87 16 4 C 0.15 1.97 6.17 -82.65 -0.51 1.46 16 5 C -0.13 -1.84 9.27 -39.03 -0.36 -2.20 16 6 C -0.06 -0.88 5.91 -104.67 -0.62 -1.50 16 7 C 0.56 10.34 7.77 -12.18 -0.09 10.24 16 8 O -0.53 -11.59 16.11 5.36 0.09 -11.51 16 9 N -0.69 -11.92 4.88 -54.54 -0.27 -12.19 16 10 C 0.12 2.15 2.81 -67.82 -0.19 1.96 16 11 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 12 C -0.12 -1.78 5.59 -26.69 -0.15 -1.93 16 13 C -0.13 -1.99 5.21 -26.61 -0.14 -2.13 16 14 C 0.16 3.16 3.49 -67.60 -0.24 2.92 16 15 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 16 C -0.14 -2.42 7.95 37.16 0.30 -2.12 16 17 N -0.58 -13.55 2.92 -164.55 -0.48 -14.03 16 18 C -0.25 -6.58 8.58 -15.06 -0.13 -6.71 16 19 H 0.07 1.73 6.23 -52.48 -0.33 1.40 16 20 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16 21 N -0.90 -26.22 11.23 55.49 0.62 -25.60 16 22 Si 0.89 22.25 29.58 -169.99 -5.03 17.22 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.16 3.75 4.90 -3.56 -0.02 3.73 16 27 C -0.16 -2.21 9.55 -38.84 -0.37 -2.58 16 28 C 0.31 4.26 7.74 -17.16 -0.13 4.13 16 29 O -0.48 -5.57 13.56 -18.74 -0.25 -5.82 16 30 N -0.49 -6.93 9.87 -9.60 -0.09 -7.02 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.73 7.94 -51.93 -0.41 0.31 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.74 7.86 -51.93 -0.41 0.33 16 38 H 0.15 2.12 7.62 -52.49 -0.40 1.72 16 39 H 0.40 6.10 4.91 -40.82 -0.20 5.90 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.22 7.64 -51.93 -0.40 0.82 16 46 H 0.05 0.94 7.42 -51.93 -0.39 0.55 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 49 H 0.10 2.64 6.16 -51.93 -0.32 2.32 16 50 H 0.14 1.76 6.53 -52.48 -0.34 1.42 16 51 H 0.40 2.39 9.06 45.56 0.41 2.80 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -33.02 403.87 -9.30 -42.33 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.29 Total: 7.96 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -2.68 Total: 2.58 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.22 Total: -58.85 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.17 Total: -17.33 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.02 -9.30 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071886289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.441 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds