Wall clock time and date at job start Wed Apr 1 2020 04:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46979 * 2 1 4 4 C 1.50702 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.38019 * 119.51250 * 125.00092 * 4 3 2 6 6 C 1.39923 * 119.13392 * 180.02562 * 5 4 3 7 7 C 1.48167 * 120.89579 * 179.97438 * 6 5 4 8 8 O 1.21508 * 119.99511 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00290 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00418 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.51904 * 325.08437 * 10 9 7 12 12 C 1.53036 * 109.50076 * 205.00127 * 10 9 7 13 13 C 1.53037 * 109.53609 * 301.41360 * 12 10 9 14 14 C 1.53191 * 109.31049 * 298.63032 * 13 12 10 15 15 H 1.08994 * 109.58965 * 294.84975 * 14 13 12 16 16 C 1.53008 * 109.58504 * 174.56765 * 14 13 12 17 17 N 1.46924 * 108.89296 * 54.71015 * 14 13 12 18 18 C 1.36939 * 120.63390 * 126.32187 * 17 14 13 19 19 H 1.08003 * 119.99851 * 330.41276 * 18 17 14 20 20 C 1.38810 * 120.00557 * 150.40913 * 18 17 14 21 21 N 1.31624 * 119.99291 * 344.61845 * 20 18 17 22 22 Si 1.86796 * 120.00435 * 164.61477 * 20 18 17 23 23 H 1.48503 * 109.46912 * 90.00333 * 22 20 18 24 24 H 1.48493 * 109.47167 * 209.99924 * 22 20 18 25 25 H 1.48504 * 109.47069 * 330.00392 * 22 20 18 26 26 C 1.47204 * 118.55445 * 306.46180 * 17 14 13 27 27 C 1.39615 * 118.21469 * 0.25069 * 6 5 4 28 28 C 1.38850 * 118.95030 * 359.50152 * 27 6 5 29 29 O 1.35680 * 119.62675 * 180.25245 * 28 27 6 30 30 N 1.31874 * 119.51249 * 305.01746 * 4 3 2 31 31 H 1.09006 * 109.46934 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46967 * 299.99595 * 1 2 3 33 33 H 1.08991 * 109.47324 * 59.99938 * 1 2 3 34 34 H 1.08998 * 109.46642 * 239.99991 * 2 1 3 35 35 H 1.09003 * 109.46967 * 119.99947 * 2 1 3 36 36 H 1.08998 * 109.47441 * 60.00480 * 3 2 1 37 37 H 1.09003 * 109.47228 * 299.99787 * 3 2 1 38 38 H 1.08001 * 120.43465 * 0.04231 * 5 4 3 39 39 H 0.97005 * 119.99739 * 0.02562 * 9 7 6 40 40 H 1.08997 * 109.46331 * 181.38608 * 12 10 9 41 41 H 1.09004 * 109.45805 * 61.43275 * 12 10 9 42 42 H 1.08999 * 109.49674 * 178.68295 * 13 12 10 43 43 H 1.08997 * 109.50174 * 58.58837 * 13 12 10 44 44 H 1.09000 * 109.47277 * 60.28343 * 16 14 13 45 45 H 1.08999 * 109.46902 * 180.28734 * 16 14 13 46 46 H 1.08999 * 109.46927 * 300.28463 * 16 14 13 47 47 H 0.97004 * 119.99680 * 180.02562 * 21 20 18 48 48 H 1.09008 * 109.55887 * 293.69974 * 26 17 14 49 49 H 1.09005 * 109.64988 * 173.39626 * 26 17 14 50 50 H 1.08005 * 120.52437 * 179.75021 * 27 6 5 51 51 H 0.96706 * 114.00269 * 270.26063 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2265 2.1315 -0.9847 6 6 5.6257 2.1258 -0.9780 7 6 6.3944 2.8518 -2.0159 8 8 5.8100 3.4635 -2.8881 9 7 7.7419 2.8346 -1.9920 10 6 8.5020 3.5529 -3.0179 11 1 7.9707 3.5008 -3.9682 12 6 9.8846 2.9147 -3.1699 13 6 10.6186 2.9579 -1.8278 14 6 10.8042 4.4167 -1.3986 15 1 11.4642 4.9236 -2.1025 16 6 11.4151 4.4652 0.0033 17 7 9.4931 5.0799 -1.3878 18 6 9.0532 5.7378 -0.2703 19 1 9.3727 5.4124 0.7088 20 6 8.1967 6.8229 -0.3957 21 7 8.0447 7.4096 -1.5641 22 14 7.2598 7.4504 1.0935 23 1 8.0682 8.4853 1.7869 24 1 5.9705 8.0417 0.6541 25 1 6.9960 6.3230 2.0235 26 6 8.6635 5.0185 -2.6022 27 6 6.2780 1.4126 0.0295 28 6 5.5179 0.7507 0.9845 29 8 6.1377 0.0577 1.9727 30 7 4.1970 0.7838 0.9389 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 1.9563 -0.8900 38 1 3.6853 2.6684 -1.7497 39 1 8.2084 2.3466 -1.2954 40 1 10.4585 3.4647 -3.9157 41 1 9.7730 1.8785 -3.4896 42 1 11.5939 2.4822 -1.9310 43 1 10.0332 2.4290 -1.0757 44 1 12.3853 3.9684 -0.0057 45 1 11.5416 5.5038 0.3088 46 1 10.7537 3.9579 0.7056 47 1 7.4465 8.1682 -1.6517 48 1 9.1490 5.5744 -3.4044 49 1 7.6837 5.4508 -2.3990 50 1 7.3569 1.3797 0.0678 51 1 6.3169 -0.8667 1.7522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071886289.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:12 Heat of formation + Delta-G solvation = -55.985433 kcal Electronic energy + Delta-G solvation = -31880.434444 eV Core-core repulsion = 27779.159953 eV Total energy + Delta-G solvation = -4101.274491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.97866 -40.78258 -39.18846 -38.32328 -35.95472 -35.78685 -34.55386 -33.79169 -32.09499 -31.74691 -31.51060 -27.94894 -27.91708 -26.90455 -25.55039 -23.96348 -23.89688 -22.74592 -22.09932 -21.48087 -20.44039 -19.88195 -18.43591 -18.30491 -17.81265 -17.17034 -16.81702 -16.70010 -16.30784 -16.05173 -15.83699 -15.75631 -15.50942 -15.29404 -14.92758 -14.71190 -14.56778 -14.41399 -14.05968 -13.77116 -13.63616 -13.39412 -13.04912 -12.97742 -12.91463 -12.72210 -12.63476 -12.55716 -12.43873 -12.35102 -12.15965 -12.10216 -12.03500 -11.59215 -11.58192 -11.37779 -11.20799 -11.06053 -11.00849 -10.56907 -10.51281 -10.03473 -9.92336 -8.57541 -7.84465 -5.28546 -0.45371 -0.14922 1.36532 1.40508 1.46145 1.73208 2.10895 2.44434 2.47469 2.65370 3.31776 3.33206 3.49596 3.61988 3.83672 3.85125 3.99052 4.08149 4.10838 4.16769 4.17863 4.20285 4.35561 4.47819 4.55095 4.63625 4.68006 4.74153 4.79652 4.81155 4.85811 4.94320 4.95655 5.00990 5.04406 5.06803 5.12029 5.19337 5.26403 5.31605 5.34015 5.40275 5.48840 5.56552 5.59321 5.63592 5.72535 5.73078 6.43054 6.50718 6.56245 6.79285 7.16714 7.17615 7.91769 8.42642 9.20965 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010612 B = 0.003551 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.971236 B = 7883.834715 C = 8571.194475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.071 4.071 4 C 0.152 3.848 5 C -0.138 4.138 6 C -0.073 4.073 7 C 0.550 3.450 8 O -0.574 6.574 9 N -0.679 5.679 10 C 0.127 3.873 11 H 0.071 0.929 12 C -0.110 4.110 13 C -0.120 4.120 14 C 0.153 3.847 15 H 0.015 0.985 16 C -0.129 4.129 17 N -0.594 5.594 18 C -0.235 4.235 19 H 0.074 0.926 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.942 3.058 23 H -0.282 1.282 24 H -0.303 1.303 25 H -0.274 1.274 26 C 0.170 3.830 27 C -0.156 4.156 28 C 0.314 3.686 29 O -0.482 6.482 30 N -0.498 5.498 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.148 0.852 39 H 0.407 0.593 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.050 0.950 47 H 0.243 0.757 48 H 0.001 0.999 49 H 0.046 0.954 50 H 0.161 0.839 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -20.393 1.623 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.108 4.108 4 C 0.014 3.986 5 C -0.159 4.159 6 C -0.084 4.084 7 C 0.337 3.663 8 O -0.455 6.455 9 N -0.329 5.329 10 C 0.021 3.979 11 H 0.089 0.911 12 C -0.148 4.148 13 C -0.159 4.159 14 C 0.048 3.952 15 H 0.033 0.967 16 C -0.187 4.187 17 N -0.318 5.318 18 C -0.366 4.366 19 H 0.092 0.908 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.772 3.228 23 H -0.208 1.208 24 H -0.230 1.230 25 H -0.199 1.199 26 C 0.043 3.957 27 C -0.177 4.177 28 C 0.135 3.865 29 O -0.292 6.292 30 N -0.219 5.219 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.166 0.834 39 H 0.245 0.755 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.052 0.948 48 H 0.019 0.981 49 H 0.064 0.936 50 H 0.179 0.821 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.978 -19.776 1.940 20.485 hybrid contribution 0.170 1.228 0.030 1.240 sum -4.807 -18.548 1.970 19.262 Atomic orbital electron populations 1.21765 0.94251 1.02363 1.02325 1.21374 0.96668 0.94408 1.02258 1.20765 0.85779 0.99739 1.04549 1.21301 0.97882 0.91121 0.88247 1.22240 0.93206 0.99658 1.00755 1.20321 0.94789 0.97507 0.95775 1.18411 0.83088 0.80339 0.84483 1.90733 1.70454 1.45240 1.39058 1.45673 1.04794 1.51426 1.31028 1.21587 0.92927 0.93296 0.90098 0.91085 1.21680 0.92980 1.01395 0.98770 1.21968 1.01111 0.96525 0.96288 1.20785 0.86010 0.92428 0.96013 0.96732 1.21732 0.99992 1.00754 0.96178 1.44291 1.14775 1.61369 1.11361 1.19358 1.23881 1.06013 0.87300 0.90829 1.25661 1.03684 0.97202 0.98020 1.70143 1.40195 1.23116 1.24632 0.85644 0.78163 0.78429 0.80559 1.20850 1.23039 1.19929 1.20906 0.95536 0.91571 0.87677 1.22393 1.02649 0.99227 0.93461 1.19008 0.86659 0.93957 0.86905 1.84786 1.76633 1.29553 1.38252 1.66849 1.10239 1.20479 1.24310 0.91894 0.92370 0.92089 0.92250 0.91794 0.89262 0.88502 0.83438 0.75478 0.90568 0.89327 0.88932 0.91923 0.90544 0.94781 0.93064 0.94821 0.98140 0.93577 0.82109 0.71544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.23 16 2 C -0.11 -1.81 5.79 30.59 0.18 -1.63 16 3 C -0.07 -1.36 5.61 29.85 0.17 -1.19 16 4 C 0.15 3.91 6.17 42.50 0.26 4.18 16 5 C -0.14 -4.06 9.27 22.63 0.21 -3.85 16 6 C -0.07 -2.31 5.91 -19.90 -0.12 -2.43 16 7 C 0.55 20.76 7.77 86.88 0.67 21.44 16 8 O -0.57 -26.13 16.11 -3.74 -0.06 -26.19 16 9 N -0.68 -22.95 4.88 -444.75 -2.17 -25.12 16 10 C 0.13 4.60 2.81 45.07 0.13 4.73 16 11 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 12 C -0.11 -2.96 5.59 30.62 0.17 -2.79 16 13 C -0.12 -3.16 5.21 30.67 0.16 -3.00 16 14 C 0.15 5.56 3.49 44.98 0.16 5.72 16 15 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 16 C -0.13 -4.26 7.95 71.98 0.57 -3.68 16 17 N -0.59 -27.76 2.92 -674.51 -1.97 -29.73 16 18 C -0.23 -12.40 8.58 84.03 0.72 -11.68 16 19 H 0.07 3.75 6.23 -2.91 -0.02 3.73 16 20 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 21 N -0.93 -57.32 11.23 21.65 0.24 -57.08 16 22 Si 0.94 46.92 29.58 68.60 2.03 48.95 16 23 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 25 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 26 C 0.17 8.18 4.90 86.31 0.42 8.61 16 27 C -0.16 -4.09 9.55 22.75 0.22 -3.87 16 28 C 0.31 7.97 7.74 84.78 0.66 8.63 16 29 O -0.48 -9.81 13.56 -89.98 -1.22 -11.03 16 30 N -0.50 -13.33 9.87 -297.16 -2.93 -16.26 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.18 7.94 -2.39 -0.02 1.16 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 1.61 7.86 -2.39 -0.02 1.59 16 38 H 0.15 4.32 7.62 -2.91 -0.02 4.30 16 39 H 0.41 11.61 4.91 -92.70 -0.46 11.15 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 42 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 1.56 6.40 -2.39 -0.02 1.55 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.03 1.29 7.64 -2.39 -0.02 1.27 16 46 H 0.05 1.68 7.42 -2.39 -0.02 1.67 16 47 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 49 H 0.05 2.69 6.16 -2.38 -0.01 2.67 16 50 H 0.16 3.51 6.53 -2.91 -0.02 3.49 16 51 H 0.42 3.66 9.06 -74.05 -0.67 2.99 16 Total: -1.00 -75.61 403.87 -0.54 -76.14 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.17 Total: 24.84 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 5.71 Total: 15.48 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.83 Total: -128.19 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.28 Total: -37.22 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.61 -0.54 -76.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071886289.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.158 kcal (2) G-P(sol) polarization free energy of solvation -75.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds