Wall clock time and date at job start Wed Apr 1 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 C 1.50701 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.38023 * 119.50969 * 125.25445 * 4 3 2 6 6 C 1.39932 * 119.12678 * 180.22948 * 5 4 3 7 7 C 1.48165 * 120.89205 * 179.79650 * 6 5 4 8 8 O 1.21513 * 119.99625 * 359.71822 * 7 6 5 9 9 N 1.34769 * 120.00135 * 179.71861 * 7 6 5 10 10 C 1.46500 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.50188 * 35.06296 * 10 9 7 12 12 C 1.53045 * 109.49979 * 155.16521 * 10 9 7 13 13 C 1.53034 * 109.53817 * 181.31796 * 12 10 9 14 14 C 1.53190 * 109.31105 * 298.62962 * 13 12 10 15 15 H 1.09007 * 109.70476 * 294.77843 * 14 13 12 16 16 C 1.53002 * 109.58753 * 174.42545 * 14 13 12 17 17 N 1.46920 * 108.77737 * 54.63787 * 14 13 12 18 18 C 1.36936 * 120.63115 * 126.40958 * 17 14 13 19 19 H 1.08004 * 120.00194 * 330.16138 * 18 17 14 20 20 C 1.38822 * 119.99855 * 150.15781 * 18 17 14 21 21 N 1.31620 * 119.99894 * 344.49212 * 20 18 17 22 22 Si 1.86801 * 119.99668 * 164.49152 * 20 18 17 23 23 H 1.48506 * 109.46773 * 90.00394 * 22 20 18 24 24 H 1.48501 * 109.46790 * 210.00013 * 22 20 18 25 25 H 1.48498 * 109.47308 * 330.00413 * 22 20 18 26 26 C 1.46925 * 118.74051 * 306.39056 * 17 14 13 27 27 C 1.39610 * 118.21557 * 359.52362 * 6 5 4 28 28 C 1.38845 * 118.95096 * 0.25151 * 27 6 5 29 29 O 1.35686 * 119.62139 * 179.97438 * 28 27 6 30 30 N 1.31871 * 119.51226 * 304.99903 * 4 3 2 31 31 H 1.09010 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47667 * 300.00106 * 1 2 3 33 33 H 1.08997 * 109.47284 * 60.00893 * 1 2 3 34 34 H 1.09001 * 109.47667 * 239.99894 * 2 1 3 35 35 H 1.08997 * 109.47284 * 119.99107 * 2 1 3 36 36 H 1.08998 * 109.47494 * 59.99300 * 3 2 1 37 37 H 1.09005 * 109.46981 * 299.99910 * 3 2 1 38 38 H 1.07997 * 120.43852 * 0.02562 * 5 4 3 39 39 H 0.97002 * 120.00365 * 0.02562 * 9 7 6 40 40 H 1.09006 * 109.45536 * 301.33360 * 12 10 9 41 41 H 1.08998 * 109.45983 * 61.30360 * 12 10 9 42 42 H 1.09004 * 109.49845 * 178.68155 * 13 12 10 43 43 H 1.09000 * 109.50226 * 58.58361 * 13 12 10 44 44 H 1.09000 * 109.47123 * 300.71303 * 16 14 13 45 45 H 1.09007 * 109.47196 * 60.71051 * 16 14 13 46 46 H 1.08998 * 109.47588 * 180.70933 * 16 14 13 47 47 H 0.96997 * 119.99522 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.58752 * 173.39286 * 26 17 14 49 49 H 1.08993 * 109.58659 * 293.82223 * 26 17 14 50 50 H 1.08006 * 120.52370 * 180.23096 * 27 6 5 51 51 H 0.96705 * 113.99793 * 90.00149 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2271 2.1359 -0.9801 6 6 5.6264 2.1265 -0.9747 7 6 6.3960 2.8535 -2.0113 8 8 5.8123 3.4645 -2.8845 9 7 7.7433 2.8372 -1.9856 10 6 8.5042 3.5565 -3.0103 11 1 7.9740 4.4686 -3.2840 12 6 9.8878 3.9140 -2.4623 13 6 10.6714 4.6941 -3.5203 14 6 10.8553 3.8176 -4.7631 15 1 11.4831 2.9605 -4.5188 16 6 11.5149 4.6359 -5.8750 17 7 9.5367 3.3502 -5.2117 18 6 9.1291 3.5473 -6.5040 19 1 9.4855 4.4031 -7.0582 20 6 8.2577 2.6470 -7.1019 21 7 8.0614 1.4632 -6.5612 22 14 7.3640 3.1159 -8.6738 23 1 8.1842 2.7193 -9.8466 24 1 6.0549 2.4169 -8.7261 25 1 7.1426 4.5841 -8.6983 26 6 8.6637 2.6670 -4.2474 27 6 6.2779 1.4186 0.0370 28 6 5.5170 0.7521 0.9881 29 8 6.1360 0.0595 1.9771 30 7 4.1962 0.7846 0.9411 31 1 -0.3634 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 1.6765 1.9565 0.8899 37 1 1.6765 1.9564 -0.8900 38 1 3.6866 2.6756 -1.7435 39 1 8.2094 2.3492 -1.2888 40 1 9.7767 4.5267 -1.5676 41 1 10.4265 3.0001 -2.2121 42 1 11.6478 4.9686 -3.1210 43 1 10.1212 5.5958 -3.7893 44 1 10.8883 5.4951 -6.1143 45 1 12.4930 4.9817 -5.5403 46 1 11.6335 4.0142 -6.7624 47 1 7.4523 0.8343 -6.9788 48 1 7.6874 2.4910 -4.6991 49 1 9.1118 1.7164 -3.9586 50 1 7.3567 1.3897 0.0790 51 1 6.3152 0.5822 2.7707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071886290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:17 Heat of formation + Delta-G solvation = -33.733004 kcal Electronic energy + Delta-G solvation = -30912.962790 eV Core-core repulsion = 26812.653237 eV Total energy + Delta-G solvation = -4100.309553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.95936 -39.38811 -37.76569 -37.42227 -35.07973 -34.55036 -32.94717 -32.65888 -30.93790 -30.48362 -29.84953 -27.14316 -26.29252 -25.20230 -24.11743 -23.07582 -22.31584 -21.76656 -20.69339 -20.10620 -19.40928 -18.72975 -17.21532 -17.08538 -16.39497 -15.83817 -15.76183 -15.50151 -15.05027 -14.91500 -14.65412 -14.38624 -13.95115 -13.84958 -13.80372 -13.59184 -13.39184 -12.91720 -12.81526 -12.53275 -12.42106 -12.21241 -11.98984 -11.90298 -11.64129 -11.49552 -11.37612 -11.14421 -10.92329 -10.88821 -10.70400 -10.59557 -10.42803 -10.28962 -10.12164 -9.98478 -9.96578 -9.71603 -9.49322 -9.42020 -9.02300 -8.64599 -8.43190 -6.62005 -5.75183 -3.19931 0.57864 0.76004 2.87147 3.23406 3.32040 3.41732 3.49037 3.51060 3.67787 4.20826 4.48137 4.55461 4.71382 4.79481 4.85329 4.91488 4.97111 5.18780 5.28742 5.33600 5.34546 5.39285 5.45923 5.53850 5.55397 5.57864 5.63026 5.67641 5.83822 5.89799 5.92970 6.02821 6.05809 6.13518 6.22710 6.24872 6.26817 6.36435 6.41780 6.44763 6.59629 6.68322 6.82643 7.02727 7.10841 7.20656 7.27325 7.66605 7.69590 7.74570 7.86226 8.41097 8.49821 9.23337 9.87648 10.43096 11.33108 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.002866 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.615989 B = 9767.306794 C =11569.365237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.069 4.069 4 C 0.151 3.849 5 C -0.124 4.124 6 C -0.058 4.058 7 C 0.552 3.448 8 O -0.517 6.517 9 N -0.709 5.709 10 C 0.116 3.884 11 H 0.085 0.915 12 C -0.117 4.117 13 C -0.126 4.126 14 C 0.164 3.836 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.254 4.254 19 H 0.070 0.930 20 C 0.007 3.993 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.168 3.832 27 C -0.162 4.162 28 C 0.310 3.690 29 O -0.479 6.479 30 N -0.488 5.488 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.392 0.608 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.038 0.962 46 H 0.061 0.939 47 H 0.253 0.747 48 H 0.093 0.907 49 H 0.018 0.982 50 H 0.144 0.856 51 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 0.977 18.183 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.013 3.987 5 C -0.145 4.145 6 C -0.069 4.069 7 C 0.336 3.664 8 O -0.392 6.392 9 N -0.360 5.360 10 C 0.011 3.989 11 H 0.103 0.897 12 C -0.155 4.155 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.194 4.194 17 N -0.306 5.306 18 C -0.384 4.384 19 H 0.088 0.912 20 C -0.192 4.192 21 N -0.543 5.543 22 Si 0.730 3.270 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.041 3.959 27 C -0.184 4.184 28 C 0.131 3.869 29 O -0.286 6.286 30 N -0.209 5.209 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.227 0.773 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.112 0.888 49 H 0.036 0.964 50 H 0.162 0.838 51 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.352 0.383 17.699 18.808 hybrid contribution 0.398 0.492 -0.611 0.879 sum -5.954 0.875 17.088 18.117 Atomic orbital electron populations 1.21779 0.95544 1.01795 1.01810 1.21452 0.95622 0.95448 1.03056 1.20643 0.87606 0.98796 1.03648 1.20963 0.96673 0.91664 0.89387 1.22180 0.93358 0.99560 0.99401 1.20471 0.94462 0.96997 0.94936 1.18017 0.82635 0.81197 0.84525 1.90832 1.69428 1.42738 1.36216 1.46014 1.05562 1.53238 1.31193 1.22098 0.90373 0.97361 0.89090 0.89725 1.21686 0.95652 1.00100 0.98036 1.22043 0.98530 0.99343 0.96631 1.20500 0.88020 0.93829 0.91879 0.95718 1.21802 0.97923 1.00190 0.99473 1.44010 1.11125 1.68041 1.07417 1.19115 1.25536 1.04827 0.88879 0.91234 1.25099 1.01606 0.94639 0.97883 1.70000 1.38129 1.05298 1.40918 0.86337 0.79334 0.78101 0.83240 1.21449 1.21576 1.20385 1.21069 0.97706 0.90883 0.86205 1.22279 1.01753 0.98051 0.96333 1.18912 0.86746 0.90890 0.90344 1.84824 1.77020 1.39317 1.27407 1.66744 1.09885 1.18176 1.26046 0.92626 0.92691 0.92612 0.91948 0.90846 0.89697 0.89672 0.82995 0.77335 0.93013 0.92191 0.92590 0.92009 0.92797 0.94343 0.91955 0.93705 0.88848 0.96408 0.83789 0.74314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.15 0.37 -0.75 16 2 C -0.12 -1.08 5.79 -26.73 -0.15 -1.23 16 3 C -0.07 -0.63 5.61 -27.88 -0.16 -0.78 16 4 C 0.15 1.79 6.17 -82.65 -0.51 1.27 16 5 C -0.12 -1.64 9.27 -39.03 -0.36 -2.00 16 6 C -0.06 -0.81 5.91 -104.67 -0.62 -1.43 16 7 C 0.55 9.57 7.76 -12.19 -0.09 9.47 16 8 O -0.52 -11.16 16.11 5.35 0.09 -11.08 16 9 N -0.71 -11.26 5.04 -54.53 -0.27 -11.53 16 10 C 0.12 2.18 2.60 -67.80 -0.18 2.00 16 11 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 12 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 13 C -0.13 -2.07 5.37 -26.62 -0.14 -2.22 16 14 C 0.16 3.30 3.50 -67.60 -0.24 3.07 16 15 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 16 C -0.14 -2.52 7.95 37.16 0.30 -2.22 16 17 N -0.58 -14.32 2.99 -164.77 -0.49 -14.81 16 18 C -0.25 -6.90 8.57 -15.06 -0.13 -7.03 16 19 H 0.07 1.84 6.24 -52.48 -0.33 1.51 16 20 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 21 N -0.90 -26.60 11.23 55.49 0.62 -25.98 16 22 Si 0.90 22.30 29.58 -169.99 -5.03 17.27 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.17 4.02 4.86 -3.71 -0.02 4.00 16 27 C -0.16 -1.90 9.55 -38.85 -0.37 -2.27 16 28 C 0.31 3.65 7.74 -17.17 -0.13 3.52 16 29 O -0.48 -4.66 13.56 -18.76 -0.25 -4.92 16 30 N -0.49 -6.12 9.87 -9.60 -0.09 -6.21 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.74 7.94 -51.93 -0.41 0.32 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 38 H 0.15 1.97 7.62 -52.49 -0.40 1.57 16 39 H 0.39 4.85 6.74 -40.82 -0.28 4.58 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.01 7.44 -51.93 -0.39 0.63 16 45 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 47 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.09 2.64 6.15 -51.93 -0.32 2.32 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.14 1.34 6.53 -52.48 -0.34 0.99 16 51 H 0.40 1.75 9.06 45.56 0.41 2.16 16 LS Contribution 407.36 15.07 6.14 6.14 Total: -1.00 -34.10 407.36 -9.42 -43.52 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.46 Total: 6.03 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.67 Total: 1.57 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.24 Total: -58.53 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.17 Total: -15.99 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.10 -9.42 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071886290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.791 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds