Wall clock time and date at job start Wed Apr 1 2020 04:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 C 1.50701 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.38023 * 119.50969 * 125.25445 * 4 3 2 6 6 C 1.39932 * 119.12678 * 180.22948 * 5 4 3 7 7 C 1.48165 * 120.89205 * 179.79650 * 6 5 4 8 8 O 1.21513 * 119.99625 * 359.71822 * 7 6 5 9 9 N 1.34769 * 120.00135 * 179.71861 * 7 6 5 10 10 C 1.46500 * 119.99931 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.50188 * 35.06296 * 10 9 7 12 12 C 1.53045 * 109.49979 * 155.16521 * 10 9 7 13 13 C 1.53034 * 109.53817 * 181.31796 * 12 10 9 14 14 C 1.53190 * 109.31105 * 298.62962 * 13 12 10 15 15 H 1.09007 * 109.70476 * 294.77843 * 14 13 12 16 16 C 1.53002 * 109.58753 * 174.42545 * 14 13 12 17 17 N 1.46920 * 108.77737 * 54.63787 * 14 13 12 18 18 C 1.36936 * 120.63115 * 126.40958 * 17 14 13 19 19 H 1.08004 * 120.00194 * 330.16138 * 18 17 14 20 20 C 1.38822 * 119.99855 * 150.15781 * 18 17 14 21 21 N 1.31620 * 119.99894 * 344.49212 * 20 18 17 22 22 Si 1.86801 * 119.99668 * 164.49152 * 20 18 17 23 23 H 1.48506 * 109.46773 * 90.00394 * 22 20 18 24 24 H 1.48501 * 109.46790 * 210.00013 * 22 20 18 25 25 H 1.48498 * 109.47308 * 330.00413 * 22 20 18 26 26 C 1.46925 * 118.74051 * 306.39056 * 17 14 13 27 27 C 1.39610 * 118.21557 * 359.52362 * 6 5 4 28 28 C 1.38845 * 118.95096 * 0.25151 * 27 6 5 29 29 O 1.35686 * 119.62139 * 179.97438 * 28 27 6 30 30 N 1.31871 * 119.51226 * 304.99903 * 4 3 2 31 31 H 1.09010 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47667 * 300.00106 * 1 2 3 33 33 H 1.08997 * 109.47284 * 60.00893 * 1 2 3 34 34 H 1.09001 * 109.47667 * 239.99894 * 2 1 3 35 35 H 1.08997 * 109.47284 * 119.99107 * 2 1 3 36 36 H 1.08998 * 109.47494 * 59.99300 * 3 2 1 37 37 H 1.09005 * 109.46981 * 299.99910 * 3 2 1 38 38 H 1.07997 * 120.43852 * 0.02562 * 5 4 3 39 39 H 0.97002 * 120.00365 * 0.02562 * 9 7 6 40 40 H 1.09006 * 109.45536 * 301.33360 * 12 10 9 41 41 H 1.08998 * 109.45983 * 61.30360 * 12 10 9 42 42 H 1.09004 * 109.49845 * 178.68155 * 13 12 10 43 43 H 1.09000 * 109.50226 * 58.58361 * 13 12 10 44 44 H 1.09000 * 109.47123 * 300.71303 * 16 14 13 45 45 H 1.09007 * 109.47196 * 60.71051 * 16 14 13 46 46 H 1.08998 * 109.47588 * 180.70933 * 16 14 13 47 47 H 0.96997 * 119.99522 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.58752 * 173.39286 * 26 17 14 49 49 H 1.08993 * 109.58659 * 293.82223 * 26 17 14 50 50 H 1.08006 * 120.52370 * 180.23096 * 27 6 5 51 51 H 0.96705 * 113.99793 * 90.00149 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2271 2.1359 -0.9801 6 6 5.6264 2.1265 -0.9747 7 6 6.3960 2.8535 -2.0113 8 8 5.8123 3.4645 -2.8845 9 7 7.7433 2.8372 -1.9856 10 6 8.5042 3.5565 -3.0103 11 1 7.9740 4.4686 -3.2840 12 6 9.8878 3.9140 -2.4623 13 6 10.6714 4.6941 -3.5203 14 6 10.8553 3.8176 -4.7631 15 1 11.4831 2.9605 -4.5188 16 6 11.5149 4.6359 -5.8750 17 7 9.5367 3.3502 -5.2117 18 6 9.1291 3.5473 -6.5040 19 1 9.4855 4.4031 -7.0582 20 6 8.2577 2.6470 -7.1019 21 7 8.0614 1.4632 -6.5612 22 14 7.3640 3.1159 -8.6738 23 1 8.1842 2.7193 -9.8466 24 1 6.0549 2.4169 -8.7261 25 1 7.1426 4.5841 -8.6983 26 6 8.6637 2.6670 -4.2474 27 6 6.2779 1.4186 0.0370 28 6 5.5170 0.7521 0.9881 29 8 6.1360 0.0595 1.9771 30 7 4.1962 0.7846 0.9411 31 1 -0.3634 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 1.6765 1.9565 0.8899 37 1 1.6765 1.9564 -0.8900 38 1 3.6866 2.6756 -1.7435 39 1 8.2094 2.3492 -1.2888 40 1 9.7767 4.5267 -1.5676 41 1 10.4265 3.0001 -2.2121 42 1 11.6478 4.9686 -3.1210 43 1 10.1212 5.5958 -3.7893 44 1 10.8883 5.4951 -6.1143 45 1 12.4930 4.9817 -5.5403 46 1 11.6335 4.0142 -6.7624 47 1 7.4523 0.8343 -6.9788 48 1 7.6874 2.4910 -4.6991 49 1 9.1118 1.7164 -3.9586 50 1 7.3567 1.3897 0.0790 51 1 6.3152 0.5822 2.7707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071886290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:16 Heat of formation + Delta-G solvation = -59.416650 kcal Electronic energy + Delta-G solvation = -30914.076517 eV Core-core repulsion = 26812.653237 eV Total energy + Delta-G solvation = -4101.423279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99919 -40.73999 -39.25880 -38.33572 -36.16441 -35.85313 -34.69519 -33.81317 -32.14150 -31.76401 -31.53572 -27.93503 -27.87807 -26.98745 -25.36555 -24.00712 -23.95820 -22.71130 -22.06766 -21.44988 -20.90120 -19.77590 -18.40145 -18.29987 -18.05622 -17.19444 -16.86790 -16.76641 -16.38142 -16.05656 -15.86054 -15.67034 -15.44181 -15.35570 -15.01724 -14.93011 -14.62276 -14.45771 -14.14977 -13.72488 -13.51405 -13.35579 -13.09111 -12.99948 -12.80187 -12.74067 -12.70141 -12.55619 -12.40506 -12.30769 -12.15387 -12.05687 -12.01859 -11.70866 -11.60440 -11.51171 -11.25574 -11.14531 -11.03736 -10.54838 -10.54193 -10.18014 -9.93313 -8.62742 -7.86759 -5.32820 -0.48858 -0.16138 1.39955 1.44116 1.51654 1.68099 1.95044 2.42572 2.49773 2.62221 3.27886 3.31858 3.42801 3.70562 3.81522 3.83350 3.92606 4.06828 4.08468 4.14768 4.19250 4.23673 4.35048 4.37596 4.53213 4.59510 4.66179 4.70573 4.78536 4.79266 4.84798 4.88442 4.94032 4.98867 5.00729 5.06644 5.17025 5.18678 5.26757 5.30645 5.31774 5.37855 5.40796 5.46876 5.54729 5.60200 5.69925 5.76852 6.37781 6.45865 6.55233 6.79001 7.08822 7.16331 7.89007 8.38305 9.18479 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.002866 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.615989 B = 9767.306794 C =11569.365237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.068 4.068 4 C 0.153 3.847 5 C -0.137 4.137 6 C -0.072 4.072 7 C 0.550 3.450 8 O -0.569 6.569 9 N -0.696 5.696 10 C 0.131 3.869 11 H 0.056 0.944 12 C -0.108 4.108 13 C -0.117 4.117 14 C 0.152 3.848 15 H 0.022 0.978 16 C -0.130 4.130 17 N -0.602 5.602 18 C -0.250 4.250 19 H 0.075 0.925 20 C -0.053 4.053 21 N -0.934 5.934 22 Si 0.956 3.044 23 H -0.279 1.279 24 H -0.300 1.300 25 H -0.271 1.271 26 C 0.180 3.820 27 C -0.153 4.153 28 C 0.314 3.686 29 O -0.482 6.482 30 N -0.498 5.498 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.413 0.587 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.244 0.756 48 H 0.041 0.959 49 H -0.002 1.002 50 H 0.170 0.830 51 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 1.877 20.802 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.106 4.106 4 C 0.016 3.984 5 C -0.158 4.158 6 C -0.083 4.083 7 C 0.336 3.664 8 O -0.449 6.449 9 N -0.348 5.348 10 C 0.025 3.975 11 H 0.075 0.925 12 C -0.146 4.146 13 C -0.157 4.157 14 C 0.047 3.953 15 H 0.040 0.960 16 C -0.187 4.187 17 N -0.327 5.327 18 C -0.380 4.380 19 H 0.092 0.908 20 C -0.249 4.249 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.206 1.206 24 H -0.227 1.227 25 H -0.196 1.196 26 C 0.052 3.948 27 C -0.175 4.175 28 C 0.135 3.865 29 O -0.292 6.292 30 N -0.218 5.218 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.163 0.837 39 H 0.251 0.749 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.016 0.984 50 H 0.187 0.813 51 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -5.115 1.299 20.382 21.054 hybrid contribution 0.096 0.179 -1.335 1.351 sum -5.019 1.477 19.047 19.753 Atomic orbital electron populations 1.21753 0.94010 1.02255 1.02544 1.21405 0.96929 0.95092 1.01840 1.20750 0.85839 0.99091 1.04933 1.21274 0.97853 0.90732 0.88535 1.22246 0.93321 1.00297 0.99969 1.20224 0.94609 0.98311 0.95188 1.18546 0.82981 0.80421 0.84417 1.90801 1.70456 1.45103 1.38513 1.45800 1.05227 1.52900 1.30833 1.21626 0.92743 0.94962 0.88207 0.92531 1.21667 0.92693 1.01379 0.98851 1.21947 1.00756 0.98005 0.94970 1.20829 0.85713 0.94541 0.94218 0.96038 1.21737 0.99793 0.99092 0.98089 1.44307 1.13364 1.68100 1.06891 1.19454 1.24411 1.04193 0.89965 0.90782 1.25812 1.03211 0.94888 1.00949 1.70161 1.39171 1.06309 1.42375 0.85444 0.77747 0.77890 0.80487 1.20555 1.22711 1.19585 1.20752 0.94778 0.91308 0.87935 1.22427 1.02967 0.96978 0.95121 1.19026 0.86599 0.90169 0.90700 1.84781 1.76610 1.39704 1.28137 1.66850 1.10454 1.18335 1.26201 0.92343 0.91593 0.92228 0.93445 0.91748 0.88031 0.88724 0.83692 0.74921 0.89284 0.90681 0.88454 0.92803 0.93518 0.90250 0.94423 0.94710 0.94090 0.98383 0.81263 0.71432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 71.98 0.71 -1.28 16 2 C -0.11 -2.02 5.79 30.59 0.18 -1.84 16 3 C -0.07 -1.19 5.61 29.85 0.17 -1.02 16 4 C 0.15 3.56 6.17 42.50 0.26 3.82 16 5 C -0.14 -3.70 9.27 22.63 0.21 -3.49 16 6 C -0.07 -2.04 5.91 -19.90 -0.12 -2.16 16 7 C 0.55 19.61 7.76 86.88 0.67 20.29 16 8 O -0.57 -26.11 16.11 -3.76 -0.06 -26.18 16 9 N -0.70 -21.83 5.04 -444.72 -2.24 -24.07 16 10 C 0.13 4.92 2.60 45.07 0.12 5.03 16 11 H 0.06 2.48 7.58 -2.39 -0.02 2.46 16 12 C -0.11 -3.01 5.35 30.62 0.16 -2.84 16 13 C -0.12 -3.49 5.37 30.67 0.16 -3.33 16 14 C 0.15 5.92 3.50 44.98 0.16 6.08 16 15 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 16 C -0.13 -4.59 7.95 71.98 0.57 -4.01 16 17 N -0.60 -30.20 2.99 -675.21 -2.02 -32.21 16 18 C -0.25 -13.93 8.57 84.04 0.72 -13.21 16 19 H 0.07 3.98 6.24 -2.91 -0.02 3.96 16 20 C -0.05 -3.13 4.94 84.86 0.42 -2.71 16 21 N -0.93 -58.11 11.23 21.65 0.24 -57.87 16 22 Si 0.96 47.52 29.58 68.60 2.03 49.55 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 25 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 26 C 0.18 8.89 4.86 86.37 0.42 9.31 16 27 C -0.15 -3.33 9.55 22.75 0.22 -3.11 16 28 C 0.31 6.79 7.74 84.78 0.66 7.44 16 29 O -0.48 -8.03 13.56 -90.04 -1.22 -9.25 16 30 N -0.50 -11.82 9.87 -297.16 -2.93 -14.75 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.24 7.94 -2.39 -0.02 1.22 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.45 7.86 -2.38 -0.02 1.44 16 38 H 0.15 4.02 7.62 -2.91 -0.02 4.00 16 39 H 0.41 9.38 6.74 -92.71 -0.62 8.76 16 40 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 43 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.69 7.44 -2.39 -0.02 1.68 16 45 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.04 1.48 7.63 -2.39 -0.02 1.47 16 47 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.04 2.46 6.15 -2.39 -0.01 2.44 16 49 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 50 H 0.17 2.65 6.53 -2.91 -0.02 2.63 16 51 H 0.42 2.32 9.06 -74.05 -0.67 1.65 16 Total: -1.00 -79.53 407.36 -0.85 -80.38 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.34 Total: 21.45 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 5.69 Total: 12.95 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -6.95 Total: -128.90 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.28 Total: -35.42 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -79.53 -0.85 -80.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071886290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.959 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds