Wall clock time and date at job start Wed Apr 1 2020 05:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47044 * 2 1 4 4 C 1.53001 * 109.47281 * 175.24161 * 3 2 1 5 5 C 1.52999 * 109.46804 * 294.40789 * 4 3 2 6 6 C 1.50704 * 109.46952 * 295.23856 * 3 2 1 7 7 C 1.41259 * 126.70509 * 275.26342 * 6 3 2 8 8 C 1.36822 * 103.84785 * 180.09980 * 7 6 3 9 9 C 1.47511 * 126.94698 * 179.97438 * 8 7 6 10 10 O 1.21586 * 119.99506 * 359.70695 * 9 8 7 11 11 N 1.34768 * 120.00380 * 179.70447 * 9 8 7 12 12 C 1.47897 * 134.34539 * 179.97438 * 11 9 8 13 13 C 1.52375 * 85.58808 * 156.51686 * 12 11 9 14 14 C 1.47895 * 134.34202 * 359.97438 * 11 9 8 15 15 C 1.53650 * 116.38582 * 141.36446 * 13 12 11 16 16 C 1.54605 * 102.73536 * 95.48187 * 15 13 12 17 17 N 1.47134 * 107.36152 * 20.75146 * 16 15 13 18 18 C 1.36945 * 125.58542 * 180.66547 * 17 16 15 19 19 H 1.07996 * 119.99849 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99967 * 0.02562 * 18 17 16 21 21 N 1.31628 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47107 * 60.00174 * 22 20 18 24 24 H 1.48498 * 109.47220 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47150 * 300.00156 * 22 20 18 26 26 C 1.47723 * 108.82828 * 0.93210 * 17 16 15 27 27 O 1.34641 * 106.11159 * 359.66298 * 8 7 6 28 28 N 1.20884 * 111.46580 * 0.23179 * 27 8 7 29 29 H 1.09001 * 109.46799 * 66.92657 * 1 2 3 30 30 H 1.09000 * 109.47103 * 186.92099 * 1 2 3 31 31 H 1.09001 * 109.47406 * 306.92166 * 1 2 3 32 32 H 1.08997 * 109.47797 * 240.00134 * 2 1 3 33 33 H 1.09001 * 109.47463 * 119.99315 * 2 1 3 34 34 H 1.09000 * 109.47458 * 55.23420 * 3 2 1 35 35 H 1.09001 * 109.47415 * 54.40753 * 4 3 2 36 36 H 1.09004 * 109.47002 * 174.41207 * 4 3 2 37 37 H 1.08996 * 109.47539 * 306.04629 * 5 4 3 38 38 H 1.09001 * 109.47142 * 66.04874 * 5 4 3 39 39 H 1.08998 * 109.47290 * 186.04313 * 5 4 3 40 40 H 1.08003 * 128.07824 * 359.97438 * 7 6 3 41 41 H 1.08996 * 113.85283 * 42.34735 * 12 11 9 42 42 H 1.08996 * 113.96902 * 270.69887 * 12 11 9 43 43 H 1.09000 * 113.84941 * 89.31791 * 14 11 9 44 44 H 1.08994 * 113.85298 * 317.65296 * 14 11 9 45 45 H 1.08999 * 110.76021 * 337.16940 * 15 13 12 46 46 H 1.09007 * 110.91355 * 213.86558 * 15 13 12 47 47 H 1.08996 * 109.86685 * 261.30392 * 16 15 13 48 48 H 1.09006 * 109.98032 * 140.25948 * 16 15 13 49 49 H 0.97000 * 119.99789 * 179.97438 * 21 20 18 50 50 H 1.08998 * 110.40346 * 96.33472 * 26 17 16 51 51 H 1.09004 * 110.39838 * 218.74609 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8853 1.4851 6 6 1.6362 2.1181 -1.2852 7 6 2.3252 2.0691 -2.5174 8 6 1.5591 2.8367 -3.3517 9 6 1.8179 3.1294 -4.7741 10 8 2.8040 2.6723 -5.3191 11 7 0.9613 3.9033 -5.4696 12 6 0.9070 4.3890 -6.8654 13 6 -0.5924 4.5305 -6.6336 14 6 -0.2983 4.6050 -5.1405 15 6 -1.2670 5.7610 -7.2593 16 6 -1.8110 5.2083 -8.5968 17 7 -1.9065 3.7463 -8.4613 18 6 -2.3341 2.8821 -9.4337 19 1 -2.3688 1.8210 -9.2358 20 6 -2.7230 3.3700 -10.6737 21 7 -2.6802 4.6633 -10.9150 22 14 -3.3069 2.1913 -11.9999 23 1 -4.5001 1.4524 -11.5150 24 1 -3.6612 2.9572 -13.2218 25 1 -2.2230 1.2272 -12.3175 26 6 -1.4717 3.3641 -7.1022 27 8 0.5176 3.2652 -2.6138 28 7 0.5820 2.8562 -1.4781 29 1 -0.3633 0.4028 -0.9455 30 1 -0.3633 -1.0202 0.1238 31 1 -0.3634 0.6173 0.8216 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6086 1.9805 0.8442 35 1 3.9923 0.8237 -0.6682 36 1 3.9364 2.4643 0.0201 37 1 3.4576 1.4395 2.2712 38 1 3.6938 -0.1675 1.5433 39 1 5.0480 0.9855 1.6136 40 1 3.2435 1.5490 -2.7469 41 1 1.1692 3.6331 -7.6057 42 1 1.4199 5.3375 -7.0246 43 1 -0.1537 5.6197 -4.7698 44 1 -0.9821 4.0186 -4.5268 45 1 -0.5389 6.5527 -7.4361 46 1 -2.0812 6.1205 -6.6300 47 1 -1.1278 5.4614 -9.4075 48 1 -2.7970 5.6268 -8.7992 49 1 -2.9515 5.0042 -11.7816 50 1 -2.3340 3.2506 -6.4452 51 1 -0.8930 2.4409 -7.1340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073041293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:09 Heat of formation + Delta-G solvation = 77.739620 kcal Electronic energy + Delta-G solvation = -30861.235385 eV Core-core repulsion = 26765.759648 eV Total energy + Delta-G solvation = -4095.475737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.16782 -40.59964 -38.40579 -37.91673 -35.67925 -33.47452 -32.52745 -32.20795 -31.82967 -29.71629 -28.46278 -27.43636 -26.48728 -25.90703 -24.12430 -23.62874 -23.26054 -22.61327 -20.95648 -20.30409 -19.38350 -18.38721 -17.93408 -17.78243 -16.90419 -16.34627 -16.17171 -15.40317 -15.35814 -15.09134 -14.81235 -14.54180 -14.37723 -13.93550 -13.89775 -13.73624 -13.68991 -13.14315 -12.85069 -12.60472 -12.46505 -12.35428 -12.15054 -11.91103 -11.83814 -11.77459 -11.75675 -11.33880 -11.12946 -11.10034 -10.99055 -10.94592 -10.75625 -10.58215 -10.40778 -10.25252 -10.12897 -9.89662 -9.86011 -9.77668 -9.67298 -8.71312 -8.60248 -6.85402 -5.72327 -3.05861 0.68796 1.85332 2.40805 2.89463 2.97453 3.41106 3.45552 3.46387 3.66570 4.04896 4.37332 4.45169 4.50404 4.62044 4.65048 4.71906 4.84367 4.90969 4.95636 4.99700 5.04587 5.12233 5.20075 5.28655 5.35798 5.43472 5.48642 5.49640 5.52755 5.55172 5.60804 5.66301 5.68580 5.70910 5.75671 5.81111 5.83814 5.91823 5.92192 5.98614 6.12814 6.19187 6.44660 6.47472 6.63827 6.68610 7.53757 7.54331 7.59193 7.76335 7.81257 8.01750 8.24115 9.20967 9.80500 10.45528 11.39202 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002183 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.784801 B =12824.735442 C =13270.364694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.009 4.009 4 C -0.119 4.119 5 C -0.152 4.152 6 C 0.021 3.979 7 C -0.156 4.156 8 C -0.069 4.069 9 C 0.619 3.381 10 O -0.520 6.520 11 N -0.627 5.627 12 C 0.134 3.866 13 C -0.104 4.104 14 C 0.114 3.886 15 C -0.130 4.130 16 C 0.178 3.822 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.161 3.839 27 O 0.119 5.881 28 N -0.345 5.345 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.180 0.820 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.045 0.955 49 H 0.253 0.747 50 H 0.026 0.974 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 -2.574 23.504 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.028 4.028 4 C -0.157 4.157 5 C -0.210 4.210 6 C -0.137 4.137 7 C -0.178 4.178 8 C -0.135 4.135 9 C 0.405 3.595 10 O -0.397 6.397 11 N -0.361 5.361 12 C 0.013 3.987 13 C -0.106 4.106 14 C -0.008 4.008 15 C -0.169 4.169 16 C 0.053 3.947 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.035 3.965 27 O 0.046 5.954 28 N -0.045 5.045 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.197 0.803 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.044 0.956 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.038 -2.528 23.848 25.997 hybrid contribution 0.315 -0.840 -1.027 1.363 sum 10.353 -3.368 22.821 25.285 Atomic orbital electron populations 1.21786 0.95353 1.01695 1.02247 1.21629 0.96458 0.94559 1.02875 1.19731 0.96327 0.95572 0.91202 1.21581 0.93417 1.02104 0.98565 1.21806 1.01414 1.01274 0.96458 1.23525 0.92547 0.99738 0.97865 1.22757 1.02673 1.01292 0.91070 1.24261 0.91369 1.02594 0.95232 1.16151 0.82095 0.79624 0.81585 1.90869 1.27596 1.53316 1.67908 1.50165 1.24469 1.47223 1.14206 1.23093 0.94637 0.99515 0.81439 1.22472 0.94782 1.00161 0.93200 1.23257 0.82829 0.97039 0.97721 1.22674 0.99330 0.95193 0.99736 1.21222 0.99543 0.83125 0.90791 1.44542 1.77153 1.02829 1.08567 1.18992 1.36545 0.89028 0.91071 0.90548 1.24787 1.01686 0.96172 0.97718 1.69945 1.53594 1.10721 1.22692 0.86197 0.78605 0.79712 0.81237 1.21194 1.21608 1.21169 1.21057 0.93936 0.93446 0.88095 1.85024 1.39428 1.55575 1.15362 1.73737 1.20148 1.13154 0.97498 0.92820 0.92487 0.92519 0.91425 0.90545 0.89202 0.91135 0.91457 0.92542 0.92245 0.92349 0.80269 0.89013 0.89214 0.88949 0.89318 0.91628 0.91521 0.93462 0.93691 0.93699 0.95637 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.61 37.16 0.36 -0.91 16 2 C -0.12 -0.84 5.26 -26.73 -0.14 -0.98 16 3 C -0.01 -0.07 2.32 -91.77 -0.21 -0.28 16 4 C -0.12 -0.75 4.92 -26.73 -0.13 -0.88 16 5 C -0.15 -0.76 9.53 37.16 0.35 -0.40 16 6 C 0.02 0.23 5.33 -82.17 -0.44 -0.21 16 7 C -0.16 -1.77 10.17 -38.95 -0.40 -2.16 16 8 C -0.07 -0.91 7.22 -36.32 -0.26 -1.17 16 9 C 0.62 9.50 8.05 -12.48 -0.10 9.39 16 10 O -0.52 -9.41 17.64 5.29 0.09 -9.32 16 11 N -0.63 -9.08 3.62 -188.15 -0.68 -9.76 16 12 C 0.13 2.03 8.15 -3.60 -0.03 2.00 16 13 C -0.10 -1.63 0.99 -154.85 -0.15 -1.78 16 14 C 0.11 1.43 7.33 -3.60 -0.03 1.40 16 15 C -0.13 -2.13 6.36 -25.55 -0.16 -2.29 16 16 C 0.18 4.04 5.40 -2.85 -0.02 4.02 16 17 N -0.60 -14.81 3.41 -170.50 -0.58 -15.39 16 18 C -0.23 -6.24 10.28 -15.06 -0.15 -6.40 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.47 10.30 55.49 0.57 -25.90 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.16 3.16 6.63 -3.16 -0.02 3.14 16 27 O 0.12 1.53 9.89 15.55 0.15 1.68 16 28 N -0.35 -4.30 11.86 33.52 0.40 -3.91 16 29 H 0.05 0.55 7.45 -51.93 -0.39 0.17 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.42 6.51 -51.93 -0.34 0.08 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.43 7.80 -51.93 -0.40 0.02 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.06 0.27 6.78 -51.93 -0.35 -0.09 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.18 1.75 7.83 -52.48 -0.41 1.34 16 41 H 0.09 1.58 8.12 -51.93 -0.42 1.16 16 42 H 0.09 1.19 8.04 -51.93 -0.42 0.77 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.07 7.62 -51.93 -0.40 0.67 16 45 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16 48 H 0.04 1.14 7.47 -51.93 -0.39 0.76 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 LS Contribution 409.25 15.07 6.17 6.17 Total: -1.00 -31.39 409.25 -9.04 -40.43 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -8.51 Total: -3.15 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.63 Total: 2.20 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.29 Total: -54.96 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.25 Total: -7.64 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.39 -9.04 -40.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073041293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.172 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds