Wall clock time and date at job start Wed Apr 1 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47044 * 2 1 4 4 C 1.53001 * 109.47281 * 175.24161 * 3 2 1 5 5 C 1.52999 * 109.46804 * 294.40789 * 4 3 2 6 6 C 1.50704 * 109.46952 * 295.23856 * 3 2 1 7 7 C 1.41259 * 126.70509 * 275.26342 * 6 3 2 8 8 C 1.36822 * 103.84785 * 180.09980 * 7 6 3 9 9 C 1.47511 * 126.94698 * 179.97438 * 8 7 6 10 10 O 1.21586 * 119.99506 * 359.70695 * 9 8 7 11 11 N 1.34768 * 120.00380 * 179.70447 * 9 8 7 12 12 C 1.47897 * 134.34539 * 179.97438 * 11 9 8 13 13 C 1.52375 * 85.58808 * 156.51686 * 12 11 9 14 14 C 1.47895 * 134.34202 * 359.97438 * 11 9 8 15 15 C 1.53650 * 116.38582 * 141.36446 * 13 12 11 16 16 C 1.54605 * 102.73536 * 95.48187 * 15 13 12 17 17 N 1.47134 * 107.36152 * 20.75146 * 16 15 13 18 18 C 1.36945 * 125.58542 * 180.66547 * 17 16 15 19 19 H 1.07996 * 119.99849 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99967 * 0.02562 * 18 17 16 21 21 N 1.31628 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47107 * 60.00174 * 22 20 18 24 24 H 1.48498 * 109.47220 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47150 * 300.00156 * 22 20 18 26 26 C 1.47723 * 108.82828 * 0.93210 * 17 16 15 27 27 O 1.34641 * 106.11159 * 359.66298 * 8 7 6 28 28 N 1.20884 * 111.46580 * 0.23179 * 27 8 7 29 29 H 1.09001 * 109.46799 * 66.92657 * 1 2 3 30 30 H 1.09000 * 109.47103 * 186.92099 * 1 2 3 31 31 H 1.09001 * 109.47406 * 306.92166 * 1 2 3 32 32 H 1.08997 * 109.47797 * 240.00134 * 2 1 3 33 33 H 1.09001 * 109.47463 * 119.99315 * 2 1 3 34 34 H 1.09000 * 109.47458 * 55.23420 * 3 2 1 35 35 H 1.09001 * 109.47415 * 54.40753 * 4 3 2 36 36 H 1.09004 * 109.47002 * 174.41207 * 4 3 2 37 37 H 1.08996 * 109.47539 * 306.04629 * 5 4 3 38 38 H 1.09001 * 109.47142 * 66.04874 * 5 4 3 39 39 H 1.08998 * 109.47290 * 186.04313 * 5 4 3 40 40 H 1.08003 * 128.07824 * 359.97438 * 7 6 3 41 41 H 1.08996 * 113.85283 * 42.34735 * 12 11 9 42 42 H 1.08996 * 113.96902 * 270.69887 * 12 11 9 43 43 H 1.09000 * 113.84941 * 89.31791 * 14 11 9 44 44 H 1.08994 * 113.85298 * 317.65296 * 14 11 9 45 45 H 1.08999 * 110.76021 * 337.16940 * 15 13 12 46 46 H 1.09007 * 110.91355 * 213.86558 * 15 13 12 47 47 H 1.08996 * 109.86685 * 261.30392 * 16 15 13 48 48 H 1.09006 * 109.98032 * 140.25948 * 16 15 13 49 49 H 0.97000 * 119.99789 * 179.97438 * 21 20 18 50 50 H 1.08998 * 110.40346 * 96.33472 * 26 17 16 51 51 H 1.09004 * 110.39838 * 218.74609 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4443 0.1197 5 6 3.9703 0.8853 1.4851 6 6 1.6362 2.1181 -1.2852 7 6 2.3252 2.0691 -2.5174 8 6 1.5591 2.8367 -3.3517 9 6 1.8179 3.1294 -4.7741 10 8 2.8040 2.6723 -5.3191 11 7 0.9613 3.9033 -5.4696 12 6 0.9070 4.3890 -6.8654 13 6 -0.5924 4.5305 -6.6336 14 6 -0.2983 4.6050 -5.1405 15 6 -1.2670 5.7610 -7.2593 16 6 -1.8110 5.2083 -8.5968 17 7 -1.9065 3.7463 -8.4613 18 6 -2.3341 2.8821 -9.4337 19 1 -2.3688 1.8210 -9.2358 20 6 -2.7230 3.3700 -10.6737 21 7 -2.6802 4.6633 -10.9150 22 14 -3.3069 2.1913 -11.9999 23 1 -4.5001 1.4524 -11.5150 24 1 -3.6612 2.9572 -13.2218 25 1 -2.2230 1.2272 -12.3175 26 6 -1.4717 3.3641 -7.1022 27 8 0.5176 3.2652 -2.6138 28 7 0.5820 2.8562 -1.4781 29 1 -0.3633 0.4028 -0.9455 30 1 -0.3633 -1.0202 0.1238 31 1 -0.3634 0.6173 0.8216 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6086 1.9805 0.8442 35 1 3.9923 0.8237 -0.6682 36 1 3.9364 2.4643 0.0201 37 1 3.4576 1.4395 2.2712 38 1 3.6938 -0.1675 1.5433 39 1 5.0480 0.9855 1.6136 40 1 3.2435 1.5490 -2.7469 41 1 1.1692 3.6331 -7.6057 42 1 1.4199 5.3375 -7.0246 43 1 -0.1537 5.6197 -4.7698 44 1 -0.9821 4.0186 -4.5268 45 1 -0.5389 6.5527 -7.4361 46 1 -2.0812 6.1205 -6.6300 47 1 -1.1278 5.4614 -9.4075 48 1 -2.7970 5.6268 -8.7992 49 1 -2.9515 5.0042 -11.7816 50 1 -2.3340 3.2506 -6.4452 51 1 -0.8930 2.4409 -7.1340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073041293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:08 Heat of formation + Delta-G solvation = 60.065864 kcal Electronic energy + Delta-G solvation = -30862.001776 eV Core-core repulsion = 26765.759648 eV Total energy + Delta-G solvation = -4096.242129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.08822 -41.85628 -39.71427 -38.55368 -37.30559 -34.31706 -34.15487 -33.22038 -32.59238 -31.37799 -29.93717 -28.03499 -27.83965 -27.38859 -25.69836 -24.55894 -24.05754 -23.50583 -22.10933 -21.66562 -20.34203 -19.71217 -18.94788 -18.80752 -18.71253 -17.50607 -17.22489 -16.76371 -16.61168 -16.22145 -15.85083 -15.60676 -15.56665 -15.06928 -15.03790 -14.77692 -14.53878 -14.23524 -14.18247 -13.80878 -13.69412 -13.45923 -13.23550 -12.93582 -12.88352 -12.78293 -12.73391 -12.66254 -12.45317 -12.30259 -12.08092 -11.98420 -11.95154 -11.92134 -11.66808 -11.62939 -11.56720 -11.30266 -11.15416 -11.04140 -10.82361 -10.66175 -9.88277 -8.86804 -7.83567 -5.18109 -0.32358 0.98487 1.31826 1.45774 1.48257 1.54463 1.80941 1.89932 2.49630 2.90549 3.11461 3.27900 3.39910 3.59971 3.64689 3.76624 3.82963 3.93988 4.02403 4.06096 4.11907 4.18242 4.28008 4.34077 4.37082 4.53266 4.55182 4.57717 4.64656 4.69355 4.73086 4.78232 4.80759 4.81511 4.84622 4.97512 5.00988 5.06208 5.06679 5.13625 5.18981 5.21867 5.23320 5.27800 5.39194 5.46559 5.48655 5.74969 5.83823 6.23095 6.39521 6.64870 7.02453 7.13508 7.79744 8.42832 9.25802 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018917 B = 0.002183 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.784801 B =12824.735442 C =13270.364694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.008 4.008 4 C -0.116 4.116 5 C -0.150 4.150 6 C 0.030 3.970 7 C -0.147 4.147 8 C -0.084 4.084 9 C 0.619 3.381 10 O -0.556 6.556 11 N -0.628 5.628 12 C 0.132 3.868 13 C -0.097 4.097 14 C 0.130 3.870 15 C -0.110 4.110 16 C 0.182 3.818 17 N -0.626 5.626 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.974 3.026 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.281 1.281 26 C 0.158 3.842 27 O 0.112 5.888 28 N -0.358 5.358 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.194 0.806 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.130 0.870 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.089 0.911 47 H 0.012 0.988 48 H 0.008 0.992 49 H 0.247 0.753 50 H 0.034 0.966 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.268 -2.714 26.235 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.027 4.027 4 C -0.154 4.154 5 C -0.207 4.207 6 C -0.129 4.129 7 C -0.169 4.169 8 C -0.150 4.150 9 C 0.407 3.593 10 O -0.436 6.436 11 N -0.361 5.361 12 C 0.011 3.989 13 C -0.099 4.099 14 C 0.009 3.991 15 C -0.148 4.148 16 C 0.058 3.942 17 N -0.353 5.353 18 C -0.372 4.372 19 H 0.093 0.907 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.803 3.197 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.207 1.207 26 C 0.033 3.967 27 O 0.042 5.958 28 N -0.060 5.060 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.211 0.789 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.116 0.884 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.030 0.970 48 H 0.027 0.973 49 H 0.056 0.944 50 H 0.051 0.949 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 10.823 -2.664 26.610 28.850 hybrid contribution 0.051 -0.862 -1.824 2.018 sum 10.874 -3.526 24.786 27.295 Atomic orbital electron populations 1.21789 0.96296 1.02095 1.00917 1.21641 0.95528 0.94182 1.03838 1.19890 0.97429 0.95672 0.89734 1.21575 0.92116 1.02074 0.99652 1.21797 1.01788 1.01656 0.95504 1.23974 0.91514 0.98734 0.98630 1.23039 1.02710 1.00203 0.90938 1.23970 0.92410 1.04025 0.94546 1.16314 0.81648 0.79084 0.82260 1.90843 1.29147 1.54683 1.68958 1.50189 1.24921 1.47083 1.13885 1.23124 0.94510 0.99920 0.81372 1.22272 0.94143 0.97688 0.95802 1.23367 0.81653 0.98978 0.95082 1.22522 1.00525 0.95737 0.96063 1.21026 0.97065 0.82501 0.93654 1.44836 1.77047 1.03502 1.09889 1.19330 1.36038 0.89650 0.92133 0.90712 1.25571 1.02535 0.97730 0.99799 1.70160 1.54601 1.12123 1.22635 0.85221 0.78241 0.77821 0.78465 1.20437 1.21859 1.20690 1.21175 0.94690 0.94711 0.86161 1.85004 1.39378 1.55993 1.15470 1.73727 1.20964 1.13969 0.97357 0.95272 0.91629 0.92307 0.91714 0.88304 0.88896 0.90812 0.91938 0.92290 0.91482 0.91855 0.78895 0.91957 0.86477 0.85177 0.88447 0.88669 0.89268 0.96989 0.97333 0.94386 0.94854 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.61 71.98 0.69 -1.61 16 2 C -0.11 -1.37 5.26 30.59 0.16 -1.20 16 3 C -0.01 -0.11 2.32 -11.54 -0.03 -0.13 16 4 C -0.12 -1.20 4.92 30.59 0.15 -1.05 16 5 C -0.15 -1.09 9.53 71.98 0.69 -0.40 16 6 C 0.03 0.58 5.33 43.56 0.23 0.81 16 7 C -0.15 -3.13 10.17 22.68 0.23 -2.90 16 8 C -0.08 -2.11 7.22 24.38 0.18 -1.94 16 9 C 0.62 18.52 8.05 86.69 0.70 19.22 16 10 O -0.56 -20.15 17.64 -3.99 -0.07 -20.23 16 11 N -0.63 -17.25 3.62 -867.45 -3.14 -20.39 16 12 C 0.13 3.86 8.15 85.90 0.70 4.56 16 13 C -0.10 -2.88 0.99 -52.16 -0.05 -2.93 16 14 C 0.13 2.88 7.33 85.90 0.63 3.51 16 15 C -0.11 -3.36 6.36 31.36 0.20 -3.16 16 16 C 0.18 8.47 5.40 86.80 0.47 8.94 16 17 N -0.63 -31.46 3.41 -693.33 -2.36 -33.82 16 18 C -0.24 -13.64 10.28 84.03 0.86 -12.78 16 19 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 20 C -0.06 -3.59 5.49 84.86 0.47 -3.13 16 21 N -0.95 -56.29 10.30 21.65 0.22 -56.07 16 22 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 C 0.16 6.21 6.63 86.28 0.57 6.78 16 27 O 0.11 2.73 9.89 65.83 0.65 3.38 16 28 N -0.36 -8.40 11.86 -48.86 -0.58 -8.98 16 29 H 0.03 0.57 7.45 -2.39 -0.02 0.55 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.78 6.51 -2.39 -0.02 0.76 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.07 0.72 7.80 -2.39 -0.02 0.70 16 36 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.07 0.39 6.78 -2.39 -0.02 0.38 16 39 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.19 3.46 7.83 -2.91 -0.02 3.44 16 41 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 42 H 0.12 2.81 8.04 -2.39 -0.02 2.79 16 43 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.10 2.05 7.62 -2.39 -0.02 2.04 16 45 H 0.09 2.40 7.99 -2.39 -0.02 2.38 16 46 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 47 H 0.01 0.62 7.40 -2.39 -0.02 0.61 16 48 H 0.01 0.45 7.47 -2.38 -0.02 0.43 16 49 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 50 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.03 1.10 8.07 -2.39 -0.02 1.08 16 Total: -1.00 -71.53 409.25 4.51 -67.03 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.91 Total: 8.32 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.85 Total: 12.57 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -5.86 Total: -119.26 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.58 Total: -16.85 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -71.53 4.51 -67.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073041293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.092 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds