Wall clock time and date at job start Wed Apr 1 2020 04:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47325 * 2 1 4 4 C 1.50707 * 109.47065 * 240.00516 * 2 1 3 5 5 C 1.38348 * 119.46029 * 84.72468 * 4 2 1 6 6 C 1.38365 * 119.30039 * 179.74924 * 5 4 2 7 7 C 1.40021 * 118.28808 * 0.51068 * 6 5 4 8 8 C 1.47839 * 120.55969 * 179.72390 * 7 6 5 9 9 O 1.21549 * 119.99825 * 0.03092 * 8 7 6 10 10 N 1.34777 * 120.00105 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.09004 * 108.56671 * 62.05916 * 12 11 10 14 14 C 1.46917 * 108.61878 * 179.97438 * 12 11 10 15 15 N 1.50115 * 106.77494 * 177.92247 * 14 12 11 16 16 C 1.36933 * 120.64005 * 111.37587 * 15 14 12 17 17 H 1.07999 * 120.00367 * 155.66974 * 16 15 14 18 18 C 1.38816 * 119.99952 * 335.67025 * 16 15 14 19 19 N 1.31624 * 119.99743 * 340.63718 * 18 16 15 20 20 Si 1.86796 * 120.00374 * 160.63571 * 18 16 15 21 21 H 1.48497 * 109.47065 * 60.00023 * 20 18 16 22 22 H 1.48499 * 109.47201 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46995 * 300.00097 * 20 18 16 24 24 C 1.43428 * 118.72991 * 291.35238 * 15 14 12 25 25 C 1.55335 * 116.23919 * 89.34999 * 24 15 14 26 26 C 1.55185 * 108.87355 * 319.46749 * 25 24 15 27 27 O 1.39640 * 110.56970 * 322.14149 * 26 25 24 28 28 C 1.39526 * 118.88177 * 359.75738 * 7 6 5 29 29 N 1.31698 * 120.56551 * 359.96894 * 28 7 6 30 30 H 1.08997 * 109.47201 * 59.99699 * 1 2 3 31 31 H 1.09000 * 109.47184 * 299.99830 * 1 2 3 32 32 H 1.08999 * 109.46836 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47579 * 119.99943 * 2 1 3 34 34 H 1.09000 * 109.46851 * 59.99966 * 3 2 1 35 35 H 1.08996 * 109.47334 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46746 * 300.00453 * 3 2 1 37 37 H 1.07998 * 120.35360 * 359.97438 * 5 4 2 38 38 H 1.08000 * 120.85322 * 180.23993 * 6 5 4 39 39 H 0.97007 * 119.99889 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.47240 * 300.00486 * 11 10 8 41 41 H 1.08997 * 109.47116 * 60.00572 * 11 10 8 42 42 H 1.09000 * 109.99503 * 297.23900 * 14 12 11 43 43 H 1.09001 * 109.98896 * 58.60894 * 14 12 11 44 44 H 0.96999 * 120.00347 * 179.97438 * 19 18 16 45 45 H 1.08995 * 108.12803 * 211.11230 * 24 15 14 46 46 H 1.09000 * 108.12586 * 327.80729 * 24 15 14 47 47 H 1.09004 * 109.56463 * 79.28528 * 25 24 15 48 48 H 1.08993 * 109.56930 * 199.64952 * 25 24 15 49 49 H 1.09001 * 109.25852 * 82.42343 * 26 25 24 50 50 H 1.08999 * 109.25451 * 201.89782 * 26 25 24 51 51 H 1.07999 * 119.71962 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.1547 -0.0106 -2.4178 6 6 2.6212 -0.6648 -3.5443 7 6 2.9428 -2.0233 -3.4373 8 6 3.4397 -2.7728 -4.6107 9 8 3.5727 -2.2098 -5.6797 10 7 3.7454 -4.0804 -4.4951 11 6 4.2384 -4.8229 -5.6578 12 6 4.5070 -6.2754 -5.2589 13 1 3.5678 -6.7270 -4.9393 14 6 4.9993 -7.0021 -6.4371 15 7 5.2973 -8.4033 -5.9886 16 6 4.5334 -9.4529 -6.4243 17 1 4.9459 -10.4508 -6.4410 18 6 3.2286 -9.2342 -6.8446 19 7 2.5961 -8.1377 -6.4839 20 14 2.3704 -10.4960 -7.9220 21 1 2.3036 -11.7950 -7.2056 22 1 0.9950 -10.0293 -8.2312 23 1 3.1307 -10.6664 -9.1862 24 6 6.3980 -8.6219 -5.0953 25 6 6.0768 -8.5432 -3.5776 26 6 5.0963 -7.3656 -3.3323 27 8 5.4109 -6.2850 -4.1589 28 6 2.7857 -2.6580 -2.2047 29 7 2.3430 -1.9905 -1.1593 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.8924 1.0360 -2.4640 38 1 2.7302 -0.1420 -4.4830 39 1 3.6391 -4.5298 -3.6421 40 1 3.4900 -4.7965 -6.4498 41 1 5.1618 -4.3673 -6.0151 42 1 4.2347 -7.0141 -7.2138 43 1 5.9069 -6.5303 -6.8134 44 1 1.6844 -7.9846 -6.7778 45 1 6.8130 -9.6080 -5.3035 46 1 7.1657 -7.8801 -5.3153 47 1 5.6154 -9.4761 -3.2533 48 1 6.9968 -8.3749 -3.0179 49 1 4.0789 -7.6951 -3.5430 50 1 5.1642 -7.0523 -2.2905 51 1 3.0301 -3.7054 -2.1068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073633989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:39 Heat of formation + Delta-G solvation = -23.204078 kcal Electronic energy + Delta-G solvation = -31039.324059 eV Core-core repulsion = 26939.471075 eV Total energy + Delta-G solvation = -4099.852984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.84268 -39.43371 -38.61998 -35.82682 -35.06400 -34.62494 -32.68860 -32.29683 -31.37342 -30.43344 -28.58538 -27.56337 -25.93280 -25.34672 -24.54680 -23.55792 -22.55883 -21.28143 -20.81263 -20.13134 -19.61497 -18.06526 -17.15654 -16.79537 -16.25498 -16.03222 -15.41023 -15.15128 -15.06911 -14.89286 -14.55755 -14.47070 -14.21285 -14.05102 -13.88240 -13.45437 -13.22358 -13.07445 -13.02727 -12.89239 -12.56841 -12.40528 -12.28425 -11.97727 -11.58479 -11.53097 -11.42889 -11.30157 -11.24364 -10.85803 -10.76818 -10.51626 -10.23258 -10.12228 -10.07238 -9.96494 -9.70301 -9.54899 -9.49507 -9.23430 -8.83515 -8.72849 -8.52543 -6.84393 -5.94243 -3.32690 0.50400 1.03832 2.89371 3.32713 3.32996 3.39692 3.41671 3.72749 3.83485 4.33555 4.42049 4.60507 4.65277 4.69088 4.75369 4.83864 4.85267 4.93764 5.20326 5.21830 5.26324 5.29068 5.37483 5.44739 5.52672 5.59964 5.68729 5.79161 5.80004 5.87987 5.88757 5.92636 5.95773 5.99058 6.12072 6.30173 6.35929 6.38839 6.44124 6.50374 6.64858 6.67912 6.78966 6.87053 6.93552 7.08986 7.29740 7.67227 7.69977 7.71662 8.09480 8.30108 8.34975 9.05062 9.73223 10.27478 11.14937 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.002356 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.640086 B =11884.186147 C =12234.731644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.148 4.148 4 C 0.152 3.848 5 C -0.179 4.179 6 C -0.017 4.017 7 C -0.185 4.185 8 C 0.557 3.443 9 O -0.543 6.543 10 N -0.705 5.705 11 C 0.121 3.879 12 C 0.060 3.940 13 H 0.108 0.892 14 C 0.143 3.857 15 N -0.587 5.587 16 C -0.249 4.249 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.908 5.908 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.161 3.839 25 C -0.172 4.172 26 C 0.066 3.934 27 O -0.370 6.370 28 C 0.140 3.860 29 N -0.485 5.485 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.400 0.600 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.020 0.980 44 H 0.256 0.744 45 H 0.033 0.967 46 H 0.031 0.969 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.063 0.937 50 H 0.052 0.948 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 15.930 12.049 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.015 3.985 5 C -0.199 4.199 6 C -0.043 4.043 7 C -0.190 4.190 8 C 0.343 3.657 9 O -0.422 6.422 10 N -0.355 5.355 11 C -0.003 4.003 12 C 0.001 3.999 13 H 0.125 0.875 14 C 0.018 3.982 15 N -0.307 5.307 16 C -0.379 4.379 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.012 4.012 27 O -0.288 6.288 28 C -0.019 4.019 29 N -0.194 5.194 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.235 0.765 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.070 0.930 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.822 16.014 12.003 20.096 hybrid contribution -0.626 -0.781 -0.889 1.338 sum -2.448 15.233 11.114 19.015 Atomic orbital electron populations 1.21806 0.93353 1.02574 1.02216 1.20109 0.96368 0.95453 0.94934 1.21939 1.01481 0.94738 1.02437 1.21451 0.92494 0.89830 0.94768 1.21968 1.02950 1.01911 0.93057 1.21736 0.90752 0.92666 0.99136 1.21092 1.06086 0.96043 0.95779 1.18003 0.78029 0.82120 0.87545 1.90758 1.54169 1.68855 1.28447 1.45844 1.65525 1.09403 1.14733 1.21777 0.99195 0.91737 0.87590 1.22225 0.94775 0.92432 0.90454 0.87484 1.20743 0.98191 0.83455 0.95790 1.44093 1.34215 1.03314 1.49107 1.19221 0.92667 0.88958 1.37010 0.91328 1.24900 0.95692 0.97763 1.01206 1.69850 1.11603 1.27565 1.46317 0.86323 0.78367 0.80825 0.80993 1.21035 1.21656 1.21085 1.20374 0.90516 0.98170 0.87762 1.23581 0.98682 0.98033 1.01035 1.22363 0.99134 0.87268 0.92407 1.87511 1.57509 1.47364 1.36455 1.23009 0.91923 0.99815 0.87113 1.67514 1.11852 1.08465 1.31523 0.92412 0.91728 0.92115 0.88984 0.91687 0.92238 0.92039 0.84065 0.83510 0.76493 0.90091 0.91733 0.87777 0.96208 0.93396 0.94868 0.95023 0.92476 0.93166 0.91843 0.93018 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.18 37.15 0.34 -0.63 16 2 C -0.05 -0.38 3.23 -91.77 -0.30 -0.68 16 3 C -0.15 -0.86 8.62 37.16 0.32 -0.54 16 4 C 0.15 1.59 5.79 -82.51 -0.48 1.11 16 5 C -0.18 -1.73 9.16 -39.49 -0.36 -2.10 16 6 C -0.02 -0.19 9.72 -38.87 -0.38 -0.57 16 7 C -0.18 -2.48 5.89 -104.82 -0.62 -3.10 16 8 C 0.56 9.03 7.78 -12.33 -0.10 8.94 16 9 O -0.54 -10.44 16.42 5.32 0.09 -10.36 16 10 N -0.71 -11.21 5.35 -61.25 -0.33 -11.54 16 11 C 0.12 2.19 5.26 -4.04 -0.02 2.17 16 12 C 0.06 1.19 2.01 -29.64 -0.06 1.13 16 13 H 0.11 2.39 5.24 -51.93 -0.27 2.12 16 14 C 0.14 3.18 4.71 -4.93 -0.02 3.16 16 15 N -0.59 -13.86 2.61 -174.50 -0.46 -14.32 16 16 C -0.25 -6.42 9.62 -15.06 -0.14 -6.56 16 17 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.91 -23.42 9.57 55.49 0.53 -22.89 16 20 Si 0.90 20.75 29.60 -169.99 -5.03 15.72 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.16 3.35 5.33 -4.43 -0.02 3.32 16 25 C -0.17 -3.16 6.75 -24.34 -0.16 -3.33 16 26 C 0.07 1.20 6.38 38.31 0.24 1.45 16 27 O -0.37 -7.03 9.34 -31.94 -0.30 -7.33 16 28 C 0.14 1.74 10.71 -17.13 -0.18 1.56 16 29 N -0.49 -6.00 10.25 -9.13 -0.09 -6.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.31 6.48 -51.93 -0.34 -0.03 16 37 H 0.14 0.97 6.30 -52.49 -0.33 0.64 16 38 H 0.15 1.63 7.74 -52.49 -0.41 1.22 16 39 H 0.40 5.69 6.26 -40.82 -0.26 5.43 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 45 H 0.03 0.68 7.96 -51.93 -0.41 0.27 16 46 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 1.30 6.66 -51.93 -0.35 0.96 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.16 1.74 6.42 -52.49 -0.34 1.40 16 LS Contribution 400.47 15.07 6.03 6.03 Total: -1.00 -29.05 400.47 -9.63 -38.68 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.05 Total: 6.79 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.03 Total: 5.30 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.35 Total: -54.84 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.21 Total: -17.69 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.05 -9.63 -38.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073633989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.473 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds