Wall clock time and date at job start Wed Apr 1 2020 04:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47325 * 2 1 4 4 C 1.50707 * 109.47065 * 240.00516 * 2 1 3 5 5 C 1.38348 * 119.46029 * 84.72468 * 4 2 1 6 6 C 1.38365 * 119.30039 * 179.74924 * 5 4 2 7 7 C 1.40021 * 118.28808 * 0.51068 * 6 5 4 8 8 C 1.47839 * 120.55969 * 179.72390 * 7 6 5 9 9 O 1.21549 * 119.99825 * 0.03092 * 8 7 6 10 10 N 1.34777 * 120.00105 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00174 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.09004 * 108.56671 * 62.05916 * 12 11 10 14 14 C 1.46917 * 108.61878 * 179.97438 * 12 11 10 15 15 N 1.50115 * 106.77494 * 177.92247 * 14 12 11 16 16 C 1.36933 * 120.64005 * 111.37587 * 15 14 12 17 17 H 1.07999 * 120.00367 * 155.66974 * 16 15 14 18 18 C 1.38816 * 119.99952 * 335.67025 * 16 15 14 19 19 N 1.31624 * 119.99743 * 340.63718 * 18 16 15 20 20 Si 1.86796 * 120.00374 * 160.63571 * 18 16 15 21 21 H 1.48497 * 109.47065 * 60.00023 * 20 18 16 22 22 H 1.48499 * 109.47201 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46995 * 300.00097 * 20 18 16 24 24 C 1.43428 * 118.72991 * 291.35238 * 15 14 12 25 25 C 1.55335 * 116.23919 * 89.34999 * 24 15 14 26 26 C 1.55185 * 108.87355 * 319.46749 * 25 24 15 27 27 O 1.39640 * 110.56970 * 322.14149 * 26 25 24 28 28 C 1.39526 * 118.88177 * 359.75738 * 7 6 5 29 29 N 1.31698 * 120.56551 * 359.96894 * 28 7 6 30 30 H 1.08997 * 109.47201 * 59.99699 * 1 2 3 31 31 H 1.09000 * 109.47184 * 299.99830 * 1 2 3 32 32 H 1.08999 * 109.46836 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47579 * 119.99943 * 2 1 3 34 34 H 1.09000 * 109.46851 * 59.99966 * 3 2 1 35 35 H 1.08996 * 109.47334 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46746 * 300.00453 * 3 2 1 37 37 H 1.07998 * 120.35360 * 359.97438 * 5 4 2 38 38 H 1.08000 * 120.85322 * 180.23993 * 6 5 4 39 39 H 0.97007 * 119.99889 * 0.02562 * 10 8 7 40 40 H 1.09004 * 109.47240 * 300.00486 * 11 10 8 41 41 H 1.08997 * 109.47116 * 60.00572 * 11 10 8 42 42 H 1.09000 * 109.99503 * 297.23900 * 14 12 11 43 43 H 1.09001 * 109.98896 * 58.60894 * 14 12 11 44 44 H 0.96999 * 120.00347 * 179.97438 * 19 18 16 45 45 H 1.08995 * 108.12803 * 211.11230 * 24 15 14 46 46 H 1.09000 * 108.12586 * 327.80729 * 24 15 14 47 47 H 1.09004 * 109.56463 * 79.28528 * 25 24 15 48 48 H 1.08993 * 109.56930 * 199.64952 * 25 24 15 49 49 H 1.09001 * 109.25852 * 82.42343 * 26 25 24 50 50 H 1.08999 * 109.25451 * 201.89782 * 26 25 24 51 51 H 1.07999 * 119.71962 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 2.1547 -0.0106 -2.4178 6 6 2.6212 -0.6648 -3.5443 7 6 2.9428 -2.0233 -3.4373 8 6 3.4397 -2.7728 -4.6107 9 8 3.5727 -2.2098 -5.6797 10 7 3.7454 -4.0804 -4.4951 11 6 4.2384 -4.8229 -5.6578 12 6 4.5070 -6.2754 -5.2589 13 1 3.5678 -6.7270 -4.9393 14 6 4.9993 -7.0021 -6.4371 15 7 5.2973 -8.4033 -5.9886 16 6 4.5334 -9.4529 -6.4243 17 1 4.9459 -10.4508 -6.4410 18 6 3.2286 -9.2342 -6.8446 19 7 2.5961 -8.1377 -6.4839 20 14 2.3704 -10.4960 -7.9220 21 1 2.3036 -11.7950 -7.2056 22 1 0.9950 -10.0293 -8.2312 23 1 3.1307 -10.6664 -9.1862 24 6 6.3980 -8.6219 -5.0953 25 6 6.0768 -8.5432 -3.5776 26 6 5.0963 -7.3656 -3.3323 27 8 5.4109 -6.2850 -4.1589 28 6 2.7857 -2.6580 -2.2047 29 7 2.3430 -1.9905 -1.1593 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.8924 1.0360 -2.4640 38 1 2.7302 -0.1420 -4.4830 39 1 3.6391 -4.5298 -3.6421 40 1 3.4900 -4.7965 -6.4498 41 1 5.1618 -4.3673 -6.0151 42 1 4.2347 -7.0141 -7.2138 43 1 5.9069 -6.5303 -6.8134 44 1 1.6844 -7.9846 -6.7778 45 1 6.8130 -9.6080 -5.3035 46 1 7.1657 -7.8801 -5.3153 47 1 5.6154 -9.4761 -3.2533 48 1 6.9968 -8.3749 -3.0179 49 1 4.0789 -7.6951 -3.5430 50 1 5.1642 -7.0523 -2.2905 51 1 3.0301 -3.7054 -2.1068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073633989.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:37 Heat of formation + Delta-G solvation = -40.088871 kcal Electronic energy + Delta-G solvation = -31040.056239 eV Core-core repulsion = 26939.471075 eV Total energy + Delta-G solvation = -4100.585164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.83215 -40.85148 -39.99648 -36.81204 -36.52347 -36.07158 -33.90308 -33.60979 -33.07137 -31.49804 -30.16924 -28.04080 -27.37779 -27.06875 -25.66487 -24.57257 -24.03751 -22.43965 -22.22050 -21.32199 -21.10672 -19.27441 -18.86007 -17.91413 -17.64792 -17.08297 -16.78524 -16.51576 -16.42017 -16.20747 -16.02080 -15.60261 -15.44676 -15.31829 -14.88820 -14.76207 -14.60951 -14.23523 -14.10642 -13.95939 -13.83520 -13.59316 -13.54198 -13.28117 -12.95563 -12.86793 -12.60974 -12.52475 -12.31541 -12.21858 -12.06890 -11.93003 -11.89144 -11.78167 -11.39488 -11.33884 -11.17895 -10.98721 -10.55741 -10.49666 -10.30488 -10.25897 -9.97615 -8.71870 -7.89621 -5.29963 -0.44782 0.15785 1.48160 1.51989 1.56795 1.74555 2.05702 2.52355 2.74852 3.03186 3.10965 3.27590 3.49466 3.59887 3.66996 3.78071 3.93309 4.11798 4.15036 4.17262 4.26851 4.28127 4.37015 4.39699 4.51974 4.55004 4.65685 4.73160 4.77273 4.79446 4.83169 4.89914 4.92323 4.95159 5.00326 5.06121 5.07790 5.18485 5.18791 5.22638 5.32203 5.34987 5.37456 5.41158 5.42997 5.49459 5.54142 5.68272 6.35936 6.42963 6.50372 6.80748 7.06851 7.11166 7.83298 8.36135 9.16153 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015756 B = 0.002356 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.640086 B =11884.186147 C =12234.731644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.146 4.146 4 C 0.150 3.850 5 C -0.169 4.169 6 C -0.022 4.022 7 C -0.203 4.203 8 C 0.559 3.441 9 O -0.579 6.579 10 N -0.700 5.700 11 C 0.133 3.867 12 C 0.079 3.921 13 H 0.085 0.915 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.037 4.037 19 N -0.917 5.917 20 Si 0.959 3.041 21 H -0.281 1.281 22 H -0.295 1.295 23 H -0.286 1.286 24 C 0.154 3.846 25 C -0.165 4.165 26 C 0.067 3.933 27 O -0.366 6.366 28 C 0.139 3.861 29 N -0.503 5.503 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.150 0.850 39 H 0.409 0.591 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.251 0.749 45 H 0.031 0.969 46 H 0.035 0.965 47 H 0.053 0.947 48 H 0.078 0.922 49 H 0.037 0.963 50 H 0.087 0.913 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 17.431 13.956 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.203 4.203 4 C 0.013 3.987 5 C -0.188 4.188 6 C -0.048 4.048 7 C -0.208 4.208 8 C 0.347 3.653 9 O -0.461 6.461 10 N -0.350 5.350 11 C 0.008 3.992 12 C 0.020 3.980 13 H 0.103 0.897 14 C 0.020 3.980 15 N -0.322 5.322 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.233 4.233 19 N -0.563 5.563 20 Si 0.789 3.211 21 H -0.207 1.207 22 H -0.221 1.221 23 H -0.212 1.212 24 C 0.026 3.974 25 C -0.206 4.206 26 C -0.011 4.011 27 O -0.285 6.285 28 C -0.020 4.020 29 N -0.212 5.212 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.192 0.808 38 H 0.168 0.832 39 H 0.246 0.754 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.044 0.956 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.055 0.945 50 H 0.105 0.895 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.930 17.505 13.949 22.466 hybrid contribution -0.563 -1.218 -1.417 1.951 sum -2.492 16.287 12.532 20.701 Atomic orbital electron populations 1.21801 0.92528 1.01901 1.03467 1.20219 0.96911 0.96377 0.93309 1.21941 1.01194 0.93327 1.03841 1.22050 0.91119 0.89375 0.96147 1.22269 1.01469 1.03252 0.91801 1.21911 0.90670 0.92112 1.00106 1.20895 1.08216 0.96755 0.94968 1.18401 0.77097 0.81870 0.87946 1.90730 1.55803 1.69499 1.30023 1.45720 1.65387 1.09494 1.14418 1.21452 0.98699 0.91008 0.88013 1.21773 0.93616 0.92815 0.89779 0.89744 1.20669 0.97639 0.83524 0.96209 1.44213 1.34574 1.03268 1.50158 1.19363 0.93045 0.89361 1.37520 0.91914 1.25472 0.96279 0.99371 1.02178 1.69983 1.11298 1.28446 1.46549 0.85475 0.77044 0.79167 0.79457 1.20703 1.22115 1.21220 1.20493 0.89652 0.98153 0.89109 1.23498 0.99952 0.98008 0.99143 1.22421 0.97607 0.87107 0.93971 1.87510 1.57216 1.47648 1.36112 1.23120 0.91726 1.00312 0.86801 1.67587 1.12597 1.09609 1.31418 0.91841 0.89840 0.93746 0.89491 0.90096 0.92699 0.90899 0.80796 0.83225 0.75442 0.91609 0.91938 0.90282 0.95646 0.93992 0.95073 0.94682 0.92779 0.90344 0.94460 0.89486 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.18 71.98 0.66 -0.91 16 2 C -0.05 -0.64 3.23 -11.54 -0.04 -0.68 16 3 C -0.15 -1.21 8.62 71.98 0.62 -0.59 16 4 C 0.15 2.86 5.79 42.57 0.25 3.10 16 5 C -0.17 -2.88 9.16 22.33 0.20 -2.68 16 6 C -0.02 -0.49 9.72 22.73 0.22 -0.27 16 7 C -0.20 -5.39 5.89 -19.99 -0.12 -5.51 16 8 C 0.56 18.34 7.78 86.78 0.68 19.02 16 9 O -0.58 -22.73 16.42 -3.87 -0.06 -22.79 16 10 N -0.70 -22.49 5.35 -465.99 -2.49 -24.99 16 11 C 0.13 4.93 5.26 86.38 0.45 5.39 16 12 C 0.08 3.19 2.01 28.71 0.06 3.25 16 13 H 0.08 3.87 5.24 -2.39 -0.01 3.86 16 14 C 0.14 6.56 4.71 83.79 0.39 6.96 16 15 N -0.60 -28.67 2.61 -705.99 -1.84 -30.51 16 16 C -0.26 -13.71 9.62 84.04 0.81 -12.91 16 17 H 0.06 3.28 7.88 -2.91 -0.02 3.25 16 18 C -0.04 -1.91 4.92 84.86 0.42 -1.49 16 19 N -0.92 -48.38 9.57 21.65 0.21 -48.18 16 20 Si 0.96 43.17 29.60 68.60 2.03 45.20 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 C 0.15 6.32 5.33 87.75 0.47 6.79 16 25 C -0.17 -5.79 6.75 32.15 0.22 -5.57 16 26 C 0.07 2.33 6.38 72.73 0.46 2.80 16 27 O -0.37 -13.61 9.34 -137.19 -1.28 -14.89 16 28 C 0.14 3.37 10.71 85.02 0.91 4.28 16 29 N -0.50 -11.89 10.25 -182.81 -1.87 -13.76 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 0.45 6.48 -2.39 -0.02 0.43 16 37 H 0.17 1.76 6.30 -2.91 -0.02 1.74 16 38 H 0.15 3.22 7.74 -2.91 -0.02 3.20 16 39 H 0.41 11.58 6.26 -92.70 -0.58 11.00 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 4.00 6.03 -2.39 -0.01 3.99 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 45 H 0.03 1.27 7.96 -2.39 -0.02 1.25 16 46 H 0.03 1.39 7.98 -2.39 -0.02 1.38 16 47 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 48 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.04 1.52 6.66 -2.39 -0.02 1.50 16 50 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.17 3.57 6.42 -2.91 -0.02 3.55 16 Total: -1.00 -62.93 400.47 1.70 -61.22 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.36 Total: 27.73 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.66 Total: 20.97 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -6.01 Total: -117.44 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.34 Total: -37.68 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -62.93 1.70 -61.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073633989.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.135 kcal (2) G-P(sol) polarization free energy of solvation -62.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds