Wall clock time and date at job start Wed Apr 1 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.50696 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.34663 * 125.79956 * 264.69373 * 4 3 2 6 6 H 0.96993 * 124.85087 * 359.97438 * 5 4 3 7 7 C 1.36442 * 110.29546 * 179.82655 * 5 4 3 8 8 C 1.34493 * 108.86023 * 0.44191 * 7 5 4 9 9 C 1.36770 * 125.80536 * 85.00023 * 4 3 2 10 10 C 1.47267 * 126.93876 * 0.02562 * 9 4 3 11 11 O 1.21632 * 119.99735 * 330.39340 * 10 9 4 12 12 N 1.34770 * 120.00057 * 150.40214 * 10 9 4 13 13 C 1.46843 * 120.41187 * 4.43085 * 12 10 9 14 14 C 1.52941 * 109.47843 * 232.22306 * 13 12 10 15 15 C 1.52786 * 108.89331 * 306.39774 * 14 13 12 16 16 H 1.08997 * 108.96147 * 302.94179 * 15 14 13 17 17 O 1.42598 * 111.11085 * 182.40167 * 15 14 13 18 18 C 1.43151 * 113.63205 * 176.38731 * 17 15 14 19 19 C 1.53191 * 109.74086 * 61.68468 * 18 17 15 20 20 N 1.47603 * 109.31704 * 309.18764 * 19 18 17 21 21 C 1.36940 * 121.45873 * 229.86846 * 20 19 18 22 22 H 1.07998 * 119.99739 * 156.77469 * 21 20 19 23 23 C 1.38811 * 120.00079 * 336.77566 * 21 20 19 24 24 N 1.31621 * 119.99696 * 342.46813 * 23 21 20 25 25 Si 1.86799 * 119.99977 * 162.46737 * 23 21 20 26 26 H 1.48501 * 109.47028 * 94.92520 * 25 23 21 27 27 H 1.48503 * 109.46839 * 214.92755 * 25 23 21 28 28 H 1.48492 * 109.47100 * 334.92487 * 25 23 21 29 29 C 1.46876 * 117.22959 * 49.06632 * 20 19 18 30 30 H 1.08999 * 109.65249 * 69.13701 * 29 20 19 31 31 C 1.47131 * 120.41058 * 184.71916 * 12 10 9 32 32 H 1.09003 * 109.46900 * 299.99943 * 1 2 3 33 33 H 1.09000 * 109.47229 * 59.99983 * 1 2 3 34 34 H 1.09003 * 109.47423 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46900 * 240.00056 * 2 1 3 36 36 H 1.09000 * 109.47229 * 120.00017 * 2 1 3 37 37 H 1.08998 * 109.46669 * 60.00131 * 3 2 1 38 38 H 1.09000 * 109.47026 * 300.00141 * 3 2 1 39 39 H 1.08001 * 125.57220 * 180.17675 * 7 5 4 40 40 H 1.07993 * 126.83465 * 179.76775 * 8 7 5 41 41 H 1.08999 * 109.50707 * 352.21545 * 13 12 10 42 42 H 1.09003 * 109.50548 * 112.35274 * 13 12 10 43 43 H 1.09001 * 109.64762 * 186.50630 * 14 13 12 44 44 H 1.09003 * 109.43894 * 66.16055 * 14 13 12 45 45 H 1.09000 * 109.42712 * 181.77009 * 18 17 15 46 46 H 1.08995 * 109.42561 * 301.60401 * 18 17 15 47 47 H 1.09001 * 109.58246 * 68.58616 * 19 18 17 48 48 H 1.08997 * 109.58303 * 188.99686 * 19 18 17 49 49 H 0.97000 * 119.99853 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.72847 * 246.40269 * 31 12 10 51 51 H 1.08998 * 109.72884 * 7.07357 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3352 1.5433 1.0866 6 1 4.0142 1.6282 1.9979 7 6 5.6498 1.5057 0.7232 8 6 5.7280 1.3890 -0.6143 9 6 4.3467 1.3459 -1.1060 10 6 3.9092 1.2241 -2.5069 11 8 2.8539 0.6793 -2.7692 12 7 4.6783 1.7162 -3.4982 13 6 5.9977 2.2883 -3.2012 14 6 6.0982 3.6848 -3.8166 15 6 5.7546 3.5965 -5.3027 16 1 6.4262 2.8828 -5.7797 17 8 5.8875 4.8668 -5.9370 18 6 5.6573 4.8298 -7.3494 19 6 4.2228 4.3701 -7.6280 20 7 3.9544 3.1267 -6.8793 21 6 3.4144 2.0268 -7.4906 22 1 3.5644 1.0451 -7.0663 23 6 2.6743 2.1736 -8.6558 24 7 2.1977 3.3546 -8.9882 25 14 2.3548 0.6951 -9.7519 26 1 1.0379 0.1003 -9.4092 27 1 2.3492 1.1248 -11.1734 28 1 3.4232 -0.3150 -9.5443 29 6 4.3073 3.1113 -5.4537 30 1 3.6391 3.7737 -4.9034 31 6 4.2037 1.6925 -4.8907 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9564 -0.8900 39 1 6.4903 1.5648 1.3989 40 1 6.6285 1.3367 -1.2081 41 1 6.1298 2.3573 -2.1215 42 1 6.7743 1.6508 -3.6237 43 1 7.1128 4.0654 -3.6982 44 1 5.3953 4.3524 -3.3182 45 1 5.8067 5.8254 -7.7672 46 1 6.3573 4.1344 -7.8126 47 1 3.5228 5.1392 -7.3015 48 1 4.0981 4.1892 -8.6956 49 1 1.6803 3.4571 -9.8022 50 1 4.8242 1.0168 -5.4795 51 1 3.1662 1.3598 -4.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074319355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:43 Heat of formation + Delta-G solvation = 3.036727 kcal Electronic energy + Delta-G solvation = -32374.087285 eV Core-core repulsion = 28275.372187 eV Total energy + Delta-G solvation = -4098.715098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.47519 -39.65254 -38.18879 -35.98883 -34.90056 -34.65300 -32.10438 -31.30946 -30.92878 -30.02912 -29.58183 -27.10190 -26.27656 -25.03623 -23.91322 -22.67564 -21.82065 -21.60279 -20.97712 -20.60228 -19.55309 -18.19177 -17.69598 -16.73039 -16.27551 -15.49778 -15.29776 -15.15261 -15.01488 -14.86898 -14.54724 -14.30287 -14.14235 -13.82370 -13.70853 -13.53866 -13.30605 -13.02883 -12.94598 -12.76645 -12.71329 -12.21783 -12.10615 -11.89861 -11.59965 -11.36837 -11.24775 -11.21361 -10.91829 -10.89073 -10.68670 -10.63954 -10.47694 -10.18579 -10.16848 -9.85097 -9.56683 -9.45606 -8.94383 -8.79694 -8.47553 -8.34576 -8.07609 -6.72292 -5.78249 -3.18530 1.86142 2.32188 2.99149 3.39135 3.40658 3.47142 3.49360 3.67303 4.36026 4.49178 4.60977 4.77734 4.92828 5.03695 5.07174 5.07727 5.25347 5.31412 5.36241 5.39384 5.46187 5.49760 5.55316 5.68562 5.71098 5.76933 5.79555 5.81878 5.84158 5.91789 6.01820 6.05374 6.09363 6.17066 6.23757 6.24653 6.34383 6.36742 6.41286 6.54731 6.64275 6.75204 6.79969 6.90218 7.00244 7.21870 7.31126 7.56829 7.76200 7.86606 7.95926 8.35512 8.65260 9.15223 9.79964 10.35795 11.30201 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.003607 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.761170 B = 7761.757934 C = 9505.837322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.054 4.054 4 C 0.100 3.900 5 N -0.553 5.553 6 H 0.414 0.586 7 C -0.017 4.017 8 C -0.180 4.180 9 C -0.219 4.219 10 C 0.587 3.413 11 O -0.542 6.542 12 N -0.604 5.604 13 C 0.085 3.915 14 C -0.123 4.123 15 C 0.077 3.923 16 H 0.051 0.949 17 O -0.390 6.390 18 C 0.039 3.961 19 C 0.139 3.861 20 N -0.589 5.589 21 C -0.252 4.252 22 H 0.075 0.925 23 C 0.002 3.998 24 N -0.904 5.904 25 Si 0.902 3.098 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.279 1.279 29 C 0.139 3.861 30 H 0.035 0.965 31 C 0.125 3.875 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.026 0.974 48 H 0.101 0.899 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -1.808 20.830 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.092 4.092 4 C -0.017 4.017 5 N -0.148 5.148 6 H 0.250 0.750 7 C -0.144 4.144 8 C -0.204 4.204 9 C -0.229 4.229 10 C 0.377 3.623 11 O -0.421 6.421 12 N -0.337 5.337 13 C -0.038 4.038 14 C -0.162 4.162 15 C 0.017 3.983 16 H 0.068 0.932 17 O -0.309 6.309 18 C -0.038 4.038 19 C 0.013 3.987 20 N -0.314 5.314 21 C -0.381 4.381 22 H 0.092 0.908 23 C -0.196 4.196 24 N -0.548 5.548 25 Si 0.732 3.268 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.204 1.204 29 C 0.031 3.969 30 H 0.053 0.947 31 C 0.003 3.997 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.185 0.815 40 H 0.174 0.826 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.044 0.956 48 H 0.119 0.881 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.042 -1.900 20.730 21.976 hybrid contribution -0.180 -0.676 -0.495 0.857 sum 6.863 -2.575 20.235 21.522 Atomic orbital electron populations 1.21743 0.95575 1.01674 1.01728 1.21468 0.95778 0.95322 1.02773 1.20286 0.86714 0.98797 1.03377 1.20248 0.93309 1.02519 0.85631 1.41549 1.06196 1.58388 1.08713 0.75019 1.21738 0.85651 1.10559 0.96489 1.22250 0.96042 1.08570 0.93528 1.20192 0.93168 1.17117 0.92432 1.17386 0.83238 0.77944 0.83770 1.90761 1.23580 1.43713 1.84043 1.47999 1.17905 1.60007 1.07741 1.22396 0.84586 0.93450 1.03328 1.21785 1.02356 0.97245 0.94805 1.22428 0.97677 0.85959 0.92200 0.93150 1.87739 1.91504 1.30092 1.21607 1.23315 0.99549 1.00360 0.80609 1.21556 0.90086 0.87362 0.99680 1.44094 1.72528 1.12718 1.02043 1.19199 1.26194 0.86245 1.06456 0.90767 1.24939 0.97438 0.96698 1.00537 1.70036 1.37139 1.22249 1.25418 0.86273 0.78223 0.82233 0.80093 1.21365 1.21567 1.20392 1.21254 0.93483 0.94538 0.87654 0.94717 1.21735 1.02217 0.97245 0.78507 0.93321 0.92108 0.92722 0.89774 0.93033 0.91638 0.88797 0.81461 0.82642 0.86516 0.91810 0.90528 0.91062 0.90090 0.94201 0.95589 0.88112 0.93620 0.91236 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.30 5.86 -26.73 -0.16 -1.46 16 3 C -0.05 -0.60 5.01 -27.88 -0.14 -0.74 16 4 C 0.10 1.16 6.42 -81.88 -0.53 0.64 16 5 N -0.55 -4.51 5.90 -9.11 -0.05 -4.56 16 6 H 0.41 2.00 8.96 -40.82 -0.37 1.64 16 7 C -0.02 -0.13 11.89 -16.82 -0.20 -0.33 16 8 C -0.18 -1.89 8.73 -37.50 -0.33 -2.21 16 9 C -0.22 -3.03 5.83 -103.35 -0.60 -3.63 16 10 C 0.59 10.27 7.51 -12.59 -0.09 10.18 16 11 O -0.54 -11.11 14.10 5.25 0.07 -11.04 16 12 N -0.60 -10.31 2.99 -174.27 -0.52 -10.83 16 13 C 0.09 1.14 5.58 -3.88 -0.02 1.11 16 14 C -0.12 -1.82 5.81 -26.87 -0.16 -1.97 16 15 C 0.08 1.46 2.48 -26.64 -0.07 1.39 16 16 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 17 O -0.39 -7.94 10.49 -35.23 -0.37 -8.31 16 18 C 0.04 0.80 6.97 37.26 0.26 1.06 16 19 C 0.14 3.39 5.47 -3.34 -0.02 3.37 16 20 N -0.59 -15.02 3.09 -164.16 -0.51 -15.52 16 21 C -0.25 -6.89 8.97 -15.06 -0.14 -7.02 16 22 H 0.07 1.98 6.17 -52.49 -0.32 1.66 16 23 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 24 N -0.90 -26.25 10.99 55.49 0.61 -25.64 16 25 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C 0.14 3.05 3.00 -67.53 -0.20 2.85 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 C 0.12 2.56 4.44 -3.70 -0.02 2.54 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.21 6.92 -51.93 -0.36 0.85 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.28 7.63 -51.93 -0.40 0.89 16 39 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.16 1.37 6.13 -52.49 -0.32 1.05 16 41 H 0.12 1.31 3.13 -51.93 -0.16 1.14 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.10 2.67 5.99 -51.93 -0.31 2.36 16 49 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.07 1.43 7.46 -51.93 -0.39 1.05 16 51 H 0.10 2.36 6.74 -51.93 -0.35 2.01 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -33.45 388.68 -10.09 -43.55 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.03 Total: 5.04 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.12 Total: 4.57 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.47 Total: -56.55 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.30 Total: -19.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.45 -10.09 -43.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074319355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.583 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds