Wall clock time and date at job start Wed Apr 1 2020 04:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47234 * 2 1 4 4 C 1.50696 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.34663 * 125.79956 * 264.69373 * 4 3 2 6 6 H 0.96993 * 124.85087 * 359.97438 * 5 4 3 7 7 C 1.36442 * 110.29546 * 179.82655 * 5 4 3 8 8 C 1.34493 * 108.86023 * 0.44191 * 7 5 4 9 9 C 1.36770 * 125.80536 * 85.00023 * 4 3 2 10 10 C 1.47267 * 126.93876 * 0.02562 * 9 4 3 11 11 O 1.21632 * 119.99735 * 330.39340 * 10 9 4 12 12 N 1.34770 * 120.00057 * 150.40214 * 10 9 4 13 13 C 1.46843 * 120.41187 * 4.43085 * 12 10 9 14 14 C 1.52941 * 109.47843 * 232.22306 * 13 12 10 15 15 C 1.52786 * 108.89331 * 306.39774 * 14 13 12 16 16 H 1.08997 * 108.96147 * 302.94179 * 15 14 13 17 17 O 1.42598 * 111.11085 * 182.40167 * 15 14 13 18 18 C 1.43151 * 113.63205 * 176.38731 * 17 15 14 19 19 C 1.53191 * 109.74086 * 61.68468 * 18 17 15 20 20 N 1.47603 * 109.31704 * 309.18764 * 19 18 17 21 21 C 1.36940 * 121.45873 * 229.86846 * 20 19 18 22 22 H 1.07998 * 119.99739 * 156.77469 * 21 20 19 23 23 C 1.38811 * 120.00079 * 336.77566 * 21 20 19 24 24 N 1.31621 * 119.99696 * 342.46813 * 23 21 20 25 25 Si 1.86799 * 119.99977 * 162.46737 * 23 21 20 26 26 H 1.48501 * 109.47028 * 94.92520 * 25 23 21 27 27 H 1.48503 * 109.46839 * 214.92755 * 25 23 21 28 28 H 1.48492 * 109.47100 * 334.92487 * 25 23 21 29 29 C 1.46876 * 117.22959 * 49.06632 * 20 19 18 30 30 H 1.08999 * 109.65249 * 69.13701 * 29 20 19 31 31 C 1.47131 * 120.41058 * 184.71916 * 12 10 9 32 32 H 1.09003 * 109.46900 * 299.99943 * 1 2 3 33 33 H 1.09000 * 109.47229 * 59.99983 * 1 2 3 34 34 H 1.09003 * 109.47423 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46900 * 240.00056 * 2 1 3 36 36 H 1.09000 * 109.47229 * 120.00017 * 2 1 3 37 37 H 1.08998 * 109.46669 * 60.00131 * 3 2 1 38 38 H 1.09000 * 109.47026 * 300.00141 * 3 2 1 39 39 H 1.08001 * 125.57220 * 180.17675 * 7 5 4 40 40 H 1.07993 * 126.83465 * 179.76775 * 8 7 5 41 41 H 1.08999 * 109.50707 * 352.21545 * 13 12 10 42 42 H 1.09003 * 109.50548 * 112.35274 * 13 12 10 43 43 H 1.09001 * 109.64762 * 186.50630 * 14 13 12 44 44 H 1.09003 * 109.43894 * 66.16055 * 14 13 12 45 45 H 1.09000 * 109.42712 * 181.77009 * 18 17 15 46 46 H 1.08995 * 109.42561 * 301.60401 * 18 17 15 47 47 H 1.09001 * 109.58246 * 68.58616 * 19 18 17 48 48 H 1.08997 * 109.58303 * 188.99686 * 19 18 17 49 49 H 0.97000 * 119.99853 * 180.02562 * 24 23 21 50 50 H 1.09004 * 109.72847 * 246.40269 * 31 12 10 51 51 H 1.08998 * 109.72884 * 7.07357 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3352 1.5433 1.0866 6 1 4.0142 1.6282 1.9979 7 6 5.6498 1.5057 0.7232 8 6 5.7280 1.3890 -0.6143 9 6 4.3467 1.3459 -1.1060 10 6 3.9092 1.2241 -2.5069 11 8 2.8539 0.6793 -2.7692 12 7 4.6783 1.7162 -3.4982 13 6 5.9977 2.2883 -3.2012 14 6 6.0982 3.6848 -3.8166 15 6 5.7546 3.5965 -5.3027 16 1 6.4262 2.8828 -5.7797 17 8 5.8875 4.8668 -5.9370 18 6 5.6573 4.8298 -7.3494 19 6 4.2228 4.3701 -7.6280 20 7 3.9544 3.1267 -6.8793 21 6 3.4144 2.0268 -7.4906 22 1 3.5644 1.0451 -7.0663 23 6 2.6743 2.1736 -8.6558 24 7 2.1977 3.3546 -8.9882 25 14 2.3548 0.6951 -9.7519 26 1 1.0379 0.1003 -9.4092 27 1 2.3492 1.1248 -11.1734 28 1 3.4232 -0.3150 -9.5443 29 6 4.3073 3.1113 -5.4537 30 1 3.6391 3.7737 -4.9034 31 6 4.2037 1.6925 -4.8907 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6767 1.9564 -0.8900 39 1 6.4903 1.5648 1.3989 40 1 6.6285 1.3367 -1.2081 41 1 6.1298 2.3573 -2.1215 42 1 6.7743 1.6508 -3.6237 43 1 7.1128 4.0654 -3.6982 44 1 5.3953 4.3524 -3.3182 45 1 5.8067 5.8254 -7.7672 46 1 6.3573 4.1344 -7.8126 47 1 3.5228 5.1392 -7.3015 48 1 4.0981 4.1892 -8.6956 49 1 1.6803 3.4571 -9.8022 50 1 4.8242 1.0168 -5.4795 51 1 3.1662 1.3598 -4.9202 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074319355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:42 Heat of formation + Delta-G solvation = -19.408554 kcal Electronic energy + Delta-G solvation = -32375.060585 eV Core-core repulsion = 28275.372187 eV Total energy + Delta-G solvation = -4099.688398 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.34641 -41.09980 -39.68809 -37.40930 -36.56432 -35.81162 -33.67378 -32.97320 -32.19206 -31.06811 -30.85872 -28.93329 -27.40367 -26.44308 -25.51134 -24.13471 -23.26288 -22.60231 -22.08532 -21.74086 -21.28793 -19.34193 -18.67245 -18.56104 -17.65576 -17.09718 -16.82331 -16.64143 -16.37255 -16.16927 -15.89629 -15.55571 -15.47739 -15.17071 -14.92962 -14.85967 -14.67431 -14.51391 -14.46618 -13.94834 -13.76267 -13.64927 -13.37542 -13.16149 -12.97186 -12.83968 -12.72695 -12.55811 -12.36066 -12.24590 -12.19134 -12.11461 -12.02322 -11.90766 -11.63711 -11.54683 -11.25547 -10.81186 -10.77592 -10.51550 -9.72925 -9.55593 -9.03880 -8.80144 -7.92228 -5.36135 0.84814 1.43358 1.44511 1.54718 1.59386 1.93387 2.40831 2.44461 2.51466 2.85407 3.21704 3.44925 3.71411 3.79383 3.95111 4.01280 4.05979 4.11384 4.16327 4.17152 4.26500 4.36192 4.40474 4.43262 4.51992 4.57650 4.57842 4.61125 4.67976 4.72847 4.81880 4.85169 4.86650 4.91553 4.99160 5.03584 5.05854 5.12984 5.14822 5.24276 5.31888 5.36908 5.42135 5.48873 5.56471 5.64144 5.83008 6.04713 6.23030 6.32453 6.55533 6.74911 7.03092 7.32280 7.71708 8.25441 9.14534 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011271 B = 0.003607 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.761170 B = 7761.757934 C = 9505.837322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.052 4.052 4 C 0.095 3.905 5 N -0.535 5.535 6 H 0.433 0.567 7 C 0.013 3.987 8 C -0.200 4.200 9 C -0.256 4.256 10 C 0.577 3.423 11 O -0.589 6.589 12 N -0.606 5.606 13 C 0.084 3.916 14 C -0.114 4.114 15 C 0.082 3.918 16 H 0.056 0.944 17 O -0.392 6.392 18 C 0.052 3.948 19 C 0.143 3.857 20 N -0.607 5.607 21 C -0.260 4.260 22 H 0.074 0.926 23 C -0.050 4.050 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.267 1.267 29 C 0.137 3.863 30 H 0.001 0.999 31 C 0.141 3.859 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.215 0.785 40 H 0.174 0.826 41 H 0.148 0.852 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.060 0.940 45 H 0.111 0.889 46 H 0.050 0.950 47 H -0.006 1.006 48 H 0.077 0.923 49 H 0.251 0.749 50 H 0.067 0.933 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.959 -2.056 24.287 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.090 4.090 4 C -0.024 4.024 5 N -0.131 5.131 6 H 0.273 0.727 7 C -0.115 4.115 8 C -0.223 4.223 9 C -0.266 4.266 10 C 0.369 3.631 11 O -0.471 6.471 12 N -0.338 5.338 13 C -0.036 4.036 14 C -0.152 4.152 15 C 0.022 3.978 16 H 0.074 0.926 17 O -0.311 6.311 18 C -0.026 4.026 19 C 0.017 3.983 20 N -0.332 5.332 21 C -0.389 4.389 22 H 0.092 0.908 23 C -0.245 4.245 24 N -0.582 5.582 25 Si 0.794 3.206 26 H -0.218 1.218 27 H -0.212 1.212 28 H -0.192 1.192 29 C 0.030 3.970 30 H 0.018 0.982 31 C 0.018 3.982 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.232 0.768 40 H 0.191 0.809 41 H 0.165 0.835 42 H 0.104 0.896 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.129 0.871 46 H 0.068 0.932 47 H 0.012 0.988 48 H 0.096 0.904 49 H 0.060 0.940 50 H 0.085 0.915 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.358 -2.134 24.245 26.451 hybrid contribution -1.260 -0.595 -1.453 2.013 sum 9.098 -2.729 22.792 24.692 Atomic orbital electron populations 1.21731 0.94966 1.02054 1.01770 1.21383 0.96331 0.95297 1.01793 1.20218 0.87138 0.98543 1.03116 1.20172 0.93413 1.02432 0.86374 1.41551 1.06081 1.56695 1.08807 0.72688 1.22427 0.86252 1.06656 0.96181 1.22437 0.94749 1.10180 0.94924 1.20081 0.95869 1.20170 0.90469 1.18135 0.82540 0.76946 0.85483 1.90729 1.25669 1.45765 1.84955 1.48073 1.19458 1.60328 1.05980 1.22761 0.82810 0.92684 1.05376 1.21818 1.04105 0.98116 0.91168 1.22499 0.94727 0.85444 0.95091 0.92640 1.87749 1.91049 1.30850 1.21450 1.23179 0.96235 1.02112 0.81061 1.21434 0.92467 0.86257 0.98111 1.44385 1.72618 1.12536 1.03653 1.19487 1.25857 0.86994 1.06568 0.90825 1.25707 0.97652 0.99275 1.01857 1.70190 1.38170 1.24123 1.25729 0.85277 0.77863 0.79290 0.78179 1.21837 1.21184 1.19200 1.21375 0.95300 0.94867 0.85489 0.98179 1.21223 0.99882 0.96037 0.81075 0.90817 0.94446 0.92212 0.93800 0.90745 0.88307 0.92536 0.76808 0.80934 0.83470 0.89635 0.86728 0.92137 0.87123 0.93180 0.98796 0.90435 0.93958 0.91495 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.35 16 2 C -0.11 -2.51 5.86 30.60 0.18 -2.33 16 3 C -0.05 -1.16 5.01 29.85 0.15 -1.01 16 4 C 0.10 2.07 6.42 41.78 0.27 2.34 16 5 N -0.54 -6.50 5.90 -182.72 -1.08 -7.58 16 6 H 0.43 2.05 8.96 -92.71 -0.83 1.22 16 7 C 0.01 0.14 11.89 83.12 0.99 1.13 16 8 C -0.20 -3.47 8.73 23.62 0.21 -3.26 16 9 C -0.26 -6.87 5.83 -19.04 -0.11 -6.98 16 10 C 0.58 21.17 7.51 86.62 0.65 21.82 16 11 O -0.59 -26.44 14.10 -4.13 -0.06 -26.50 16 12 N -0.61 -21.26 2.99 -823.51 -2.46 -23.71 16 13 C 0.08 2.07 5.58 86.29 0.48 2.55 16 14 C -0.11 -3.09 5.81 30.50 0.18 -2.92 16 15 C 0.08 3.03 2.48 30.65 0.08 3.11 16 16 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 17 O -0.39 -15.50 10.49 -148.98 -1.56 -17.06 16 18 C 0.05 2.07 6.97 72.05 0.50 2.57 16 19 C 0.14 7.29 5.47 86.23 0.47 7.76 16 20 N -0.61 -32.52 3.09 -673.27 -2.08 -34.60 16 21 C -0.26 -14.88 8.97 84.03 0.75 -14.13 16 22 H 0.07 4.14 6.17 -2.91 -0.02 4.12 16 23 C -0.05 -2.89 4.98 84.86 0.42 -2.46 16 24 N -0.94 -56.95 10.99 21.65 0.24 -56.71 16 25 Si 0.97 46.61 29.59 68.60 2.03 48.64 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 28 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 29 C 0.14 6.34 3.00 45.05 0.14 6.48 16 30 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 31 C 0.14 6.17 4.44 86.26 0.38 6.55 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 1.36 6.92 -2.39 -0.02 1.34 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.68 7.63 -2.39 -0.02 1.67 16 39 H 0.22 0.32 8.06 -2.91 -0.02 0.30 16 40 H 0.17 2.27 6.13 -2.91 -0.02 2.25 16 41 H 0.15 2.80 3.13 -2.39 -0.01 2.80 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 46 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 47 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.08 4.31 5.99 -2.39 -0.01 4.29 16 49 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 50 H 0.07 2.90 7.46 -2.39 -0.02 2.88 16 51 H 0.06 3.01 6.74 -2.39 -0.02 2.99 16 Total: -1.00 -81.17 388.68 1.59 -79.58 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.12 Total: 19.08 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 6.45 Total: 18.87 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -5.38 Total: -122.61 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -1.62 Total: -43.56 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -81.17 1.59 -79.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074319355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.175 kcal (2) G-P(sol) polarization free energy of solvation -81.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds