Wall clock time and date at job start Wed Apr 1 2020 04:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 C 1.50697 * 109.47034 * 179.97438 * 3 2 1 5 5 N 1.34659 * 125.80056 * 265.15825 * 4 3 2 6 6 H 0.96999 * 124.85289 * 0.06032 * 5 4 3 7 7 C 1.36443 * 110.29957 * 180.30099 * 5 4 3 8 8 C 1.34480 * 108.85844 * 359.73232 * 7 5 4 9 9 C 1.36764 * 125.80532 * 84.99734 * 4 3 2 10 10 C 1.47262 * 126.94495 * 359.97438 * 9 4 3 11 11 O 1.21629 * 119.99957 * 330.28865 * 10 9 4 12 12 N 1.34771 * 120.00331 * 150.28050 * 10 9 4 13 13 C 1.46980 * 120.72284 * 3.32149 * 12 10 9 14 14 C 1.53147 * 108.45129 * 234.51524 * 13 12 10 15 15 C 1.52511 * 109.79598 * 305.48090 * 14 13 12 16 16 H 1.09001 * 108.41189 * 179.35539 * 15 14 13 17 17 O 1.42703 * 110.61443 * 298.72641 * 15 14 13 18 18 C 1.43064 * 113.87617 * 185.33718 * 17 15 14 19 19 C 1.53222 * 109.46020 * 298.36785 * 18 17 15 20 20 N 1.47179 * 108.69448 * 51.56592 * 19 18 17 21 21 C 1.36941 * 121.22170 * 129.08057 * 20 19 18 22 22 H 1.07999 * 119.99532 * 202.26758 * 21 20 19 23 23 C 1.38804 * 120.00163 * 22.26556 * 21 20 19 24 24 N 1.31621 * 120.00353 * 19.39249 * 23 21 20 25 25 Si 1.86799 * 120.00151 * 199.39093 * 23 21 20 26 26 H 1.48496 * 109.47440 * 89.99915 * 25 23 21 27 27 H 1.48501 * 109.47432 * 210.00109 * 25 23 21 28 28 H 1.48510 * 109.47092 * 329.99890 * 25 23 21 29 29 C 1.47593 * 117.55036 * 309.05802 * 20 19 18 30 30 H 1.08998 * 110.32073 * 172.32589 * 29 20 19 31 31 C 1.46804 * 120.72242 * 183.30356 * 12 10 9 32 32 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47111 * 300.00374 * 1 2 3 34 34 H 1.09001 * 109.46471 * 60.00602 * 1 2 3 35 35 H 1.09000 * 109.47241 * 239.99391 * 2 1 3 36 36 H 1.09002 * 109.46732 * 119.99874 * 2 1 3 37 37 H 1.09000 * 109.47488 * 59.99543 * 3 2 1 38 38 H 1.09001 * 109.46885 * 299.99145 * 3 2 1 39 39 H 1.08005 * 125.57357 * 179.75414 * 7 5 4 40 40 H 1.08000 * 126.84064 * 179.97438 * 8 7 5 41 41 H 1.09004 * 109.63987 * 354.20633 * 13 12 10 42 42 H 1.09001 * 109.64154 * 114.82284 * 13 12 10 43 43 H 1.08994 * 109.42131 * 185.37652 * 14 13 12 44 44 H 1.09002 * 109.42059 * 65.57325 * 14 13 12 45 45 H 1.09001 * 109.47539 * 58.36283 * 18 17 15 46 46 H 1.09006 * 109.47115 * 178.36498 * 18 17 15 47 47 H 1.08995 * 109.60249 * 171.34081 * 19 18 17 48 48 H 1.09006 * 109.59575 * 291.81022 * 19 18 17 49 49 H 0.96994 * 120.00466 * 179.97438 * 24 23 21 50 50 H 1.09005 * 109.51894 * 5.82296 * 31 12 10 51 51 H 1.08995 * 109.57010 * 245.66690 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3343 1.5347 1.0892 6 1 4.0125 1.6113 2.0011 7 6 5.6492 1.5105 0.7259 8 6 5.7285 1.3955 -0.6117 9 6 4.3476 1.3455 -1.1040 10 6 3.9115 1.2221 -2.5051 11 8 2.8577 0.6746 -2.7681 12 7 4.6799 1.7160 -3.4960 13 6 5.9893 2.3159 -3.2030 14 6 6.0204 3.7265 -3.7985 15 6 5.6761 3.6681 -5.2830 16 1 5.6935 4.6829 -5.6806 17 8 6.6313 2.8777 -5.9897 18 6 6.4443 2.8743 -7.4080 19 6 5.0737 2.2757 -7.7408 20 7 4.0499 2.9683 -6.9419 21 6 2.9272 3.4913 -7.5262 22 1 2.3798 4.2809 -7.0330 23 6 2.4930 3.0067 -8.7523 24 7 2.8982 1.8279 -9.1750 25 14 1.3336 4.0275 -9.8026 26 1 2.1240 4.9001 -10.7076 27 1 0.4740 3.1257 -10.6107 28 1 0.4809 4.8684 -8.9244 29 6 4.2774 3.0779 -5.4877 30 1 3.5247 3.7228 -5.0344 31 6 4.2274 1.6662 -4.8917 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3632 0.5138 -0.8901 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.6768 1.9562 -0.8901 39 1 6.4891 1.5731 1.4020 40 1 6.6295 1.3496 -1.2053 41 1 6.1341 2.3704 -2.1240 42 1 6.7778 1.7114 -3.6513 43 1 7.0168 4.1505 -3.6740 44 1 5.2936 4.3539 -3.2824 45 1 6.4954 3.8962 -7.7837 46 1 7.2258 2.2756 -7.8761 47 1 4.8633 2.4112 -8.8017 48 1 5.0701 1.2131 -7.4978 49 1 2.5944 1.4891 -10.0316 50 1 3.2048 1.2907 -4.9299 51 1 4.8794 1.0060 -5.4636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074319357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:51 Heat of formation + Delta-G solvation = 2.747851 kcal Electronic energy + Delta-G solvation = -32485.597813 eV Core-core repulsion = 28386.870189 eV Total energy + Delta-G solvation = -4098.727624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.41608 -39.65924 -38.11953 -35.69824 -34.83155 -34.58773 -32.00376 -31.40495 -30.92106 -29.99557 -29.23451 -27.38626 -26.24363 -24.77174 -23.87707 -22.84772 -21.98061 -21.56451 -21.12053 -20.85222 -18.69976 -18.00114 -17.62186 -16.87262 -16.02286 -15.41719 -15.39136 -15.19946 -14.97015 -14.90440 -14.48316 -14.34527 -14.08954 -13.84776 -13.70197 -13.54557 -13.23692 -12.99193 -12.91423 -12.63208 -12.48068 -12.10455 -12.07696 -11.86500 -11.66472 -11.33169 -11.23426 -11.21144 -11.01759 -10.84901 -10.67372 -10.61246 -10.46963 -10.18745 -10.05041 -9.87349 -9.55365 -9.35042 -8.94804 -8.74744 -8.51947 -8.27205 -7.96782 -6.74380 -5.80937 -3.20696 1.91417 2.37758 3.04753 3.37622 3.44375 3.46190 3.54969 3.78146 4.41902 4.46795 4.64689 4.82458 4.95701 5.06571 5.11800 5.16403 5.28836 5.34774 5.38636 5.42221 5.43967 5.52621 5.62134 5.72575 5.76711 5.78975 5.83213 5.87028 5.88695 6.01236 6.09302 6.13559 6.17321 6.18580 6.26023 6.28202 6.39946 6.41087 6.44449 6.52723 6.70331 6.81264 6.84546 6.91953 7.15639 7.17426 7.35561 7.55501 7.74853 7.96850 8.02774 8.33697 8.76970 9.13587 9.76327 10.32138 11.26403 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.003475 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.209783 B = 8054.627250 C = 9744.409333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.052 4.052 4 C 0.097 3.903 5 N -0.554 5.554 6 H 0.413 0.587 7 C -0.019 4.019 8 C -0.178 4.178 9 C -0.217 4.217 10 C 0.583 3.417 11 O -0.548 6.548 12 N -0.598 5.598 13 C 0.087 3.913 14 C -0.122 4.122 15 C 0.081 3.919 16 H 0.049 0.951 17 O -0.387 6.387 18 C 0.040 3.960 19 C 0.134 3.866 20 N -0.586 5.586 21 C -0.251 4.251 22 H 0.071 0.929 23 C 0.002 3.998 24 N -0.901 5.901 25 Si 0.905 3.095 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.136 3.864 30 H 0.073 0.927 31 C 0.109 3.891 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.040 0.960 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.027 0.973 49 H 0.255 0.745 50 H 0.088 0.912 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 0.734 21.007 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.090 4.090 4 C -0.020 4.020 5 N -0.149 5.149 6 H 0.249 0.751 7 C -0.146 4.146 8 C -0.202 4.202 9 C -0.226 4.226 10 C 0.372 3.628 11 O -0.427 6.427 12 N -0.331 5.331 13 C -0.035 4.035 14 C -0.161 4.161 15 C 0.022 3.978 16 H 0.067 0.933 17 O -0.306 6.306 18 C -0.038 4.038 19 C 0.009 3.991 20 N -0.308 5.308 21 C -0.380 4.380 22 H 0.088 0.912 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.734 3.266 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.204 1.204 29 C 0.027 3.973 30 H 0.091 0.909 31 C -0.015 4.015 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.185 0.815 40 H 0.173 0.827 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.098 0.902 47 H 0.119 0.881 48 H 0.045 0.955 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.090 0.277 20.864 21.737 hybrid contribution -0.679 0.668 -0.462 1.059 sum 5.411 0.945 20.403 21.129 Atomic orbital electron populations 1.21740 0.95618 1.01661 1.01669 1.21472 0.95733 0.95396 1.02800 1.20264 0.86775 0.98737 1.03246 1.20241 0.93280 1.02860 0.85642 1.41537 1.06190 1.58639 1.08562 0.75105 1.21725 0.85613 1.10796 0.96485 1.22271 0.96156 1.08307 0.93490 1.20241 0.93104 1.16738 0.92564 1.17408 0.83400 0.78153 0.83803 1.90749 1.23835 1.44051 1.84076 1.48012 1.18735 1.58818 1.07497 1.22384 0.85115 0.93579 1.02463 1.21800 1.02123 0.97601 0.94566 1.22220 0.90325 0.94020 0.91279 0.93340 1.87717 1.52599 1.71157 1.19159 1.23315 0.99926 1.00004 0.80581 1.21544 0.84619 0.93925 0.99034 1.44369 1.20831 1.66310 0.99317 1.19223 1.03486 1.12806 1.02490 0.91161 1.24940 0.98939 0.95643 1.00121 1.70040 1.47664 1.15638 1.21172 0.86247 0.80268 0.79538 0.80499 1.21471 1.21733 1.20430 1.21575 0.94559 0.94438 0.86729 0.90887 1.22237 1.01338 0.99522 0.78417 0.92736 0.93343 0.92148 0.89743 0.93056 0.91734 0.88856 0.81532 0.82665 0.87356 0.91221 0.90776 0.90704 0.94212 0.90216 0.88123 0.95461 0.93507 0.89407 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.34 5.86 -26.73 -0.16 -1.50 16 3 C -0.05 -0.59 5.01 -27.89 -0.14 -0.73 16 4 C 0.10 1.15 6.42 -81.89 -0.53 0.62 16 5 N -0.55 -4.67 5.90 -9.11 -0.05 -4.72 16 6 H 0.41 2.10 8.96 -40.82 -0.37 1.73 16 7 C -0.02 -0.16 11.89 -16.83 -0.20 -0.36 16 8 C -0.18 -1.97 8.75 -37.50 -0.33 -2.30 16 9 C -0.22 -3.09 5.83 -103.35 -0.60 -3.69 16 10 C 0.58 10.55 7.52 -12.60 -0.09 10.45 16 11 O -0.55 -11.59 14.11 5.25 0.07 -11.51 16 12 N -0.60 -10.64 2.96 -174.10 -0.52 -11.15 16 13 C 0.09 1.24 5.51 -3.70 -0.02 1.22 16 14 C -0.12 -1.75 5.82 -26.91 -0.16 -1.91 16 15 C 0.08 1.49 2.72 -26.89 -0.07 1.41 16 16 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 17 O -0.39 -7.43 9.59 -35.23 -0.34 -7.77 16 18 C 0.04 0.78 6.98 37.27 0.26 1.04 16 19 C 0.13 3.20 4.99 -3.56 -0.02 3.18 16 20 N -0.59 -14.64 2.73 -163.87 -0.45 -15.09 16 21 C -0.25 -6.88 9.71 -15.06 -0.15 -7.02 16 22 H 0.07 1.90 7.90 -52.49 -0.41 1.49 16 23 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 24 N -0.90 -25.95 11.02 55.49 0.61 -25.34 16 25 Si 0.90 21.76 29.60 -169.99 -5.03 16.73 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C 0.14 2.91 3.03 -67.07 -0.20 2.71 16 30 H 0.07 1.61 7.99 -51.93 -0.42 1.20 16 31 C 0.11 2.32 5.61 -3.71 -0.02 2.30 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.25 6.91 -51.93 -0.36 0.90 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.28 7.64 -51.93 -0.40 0.88 16 39 H 0.17 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.16 1.52 6.15 -52.49 -0.32 1.19 16 41 H 0.11 1.29 3.14 -51.93 -0.16 1.13 16 42 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.10 2.64 5.90 -51.93 -0.31 2.34 16 48 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.09 2.15 7.01 -51.93 -0.36 1.79 16 51 H 0.07 1.51 6.56 -51.93 -0.34 1.17 16 LS Contribution 388.77 15.07 5.86 5.86 Total: -1.00 -32.74 388.77 -10.00 -42.74 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -8.02 Total: 6.04 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.14 Total: 4.22 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.41 Total: -56.30 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.26 Total: -19.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.74 -10.00 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074319357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.492 kcal (2) G-P(sol) polarization free energy of solvation -32.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds