Wall clock time and date at job start Wed Apr 1 2020 04:52:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52995 * 109.47264 * 2 1
4 4 C 1.50697 * 109.47034 * 179.97438 * 3 2 1
5 5 N 1.34659 * 125.80056 * 265.15825 * 4 3 2
6 6 H 0.96999 * 124.85289 * 0.06032 * 5 4 3
7 7 C 1.36443 * 110.29957 * 180.30099 * 5 4 3
8 8 C 1.34480 * 108.85844 * 359.73232 * 7 5 4
9 9 C 1.36764 * 125.80532 * 84.99734 * 4 3 2
10 10 C 1.47262 * 126.94495 * 359.97438 * 9 4 3
11 11 O 1.21629 * 119.99957 * 330.28865 * 10 9 4
12 12 N 1.34771 * 120.00331 * 150.28050 * 10 9 4
13 13 C 1.46980 * 120.72284 * 3.32149 * 12 10 9
14 14 C 1.53147 * 108.45129 * 234.51524 * 13 12 10
15 15 C 1.52511 * 109.79598 * 305.48090 * 14 13 12
16 16 H 1.09001 * 108.41189 * 179.35539 * 15 14 13
17 17 O 1.42703 * 110.61443 * 298.72641 * 15 14 13
18 18 C 1.43064 * 113.87617 * 185.33718 * 17 15 14
19 19 C 1.53222 * 109.46020 * 298.36785 * 18 17 15
20 20 N 1.47179 * 108.69448 * 51.56592 * 19 18 17
21 21 C 1.36941 * 121.22170 * 129.08057 * 20 19 18
22 22 H 1.07999 * 119.99532 * 202.26758 * 21 20 19
23 23 C 1.38804 * 120.00163 * 22.26556 * 21 20 19
24 24 N 1.31621 * 120.00353 * 19.39249 * 23 21 20
25 25 Si 1.86799 * 120.00151 * 199.39093 * 23 21 20
26 26 H 1.48496 * 109.47440 * 89.99915 * 25 23 21
27 27 H 1.48501 * 109.47432 * 210.00109 * 25 23 21
28 28 H 1.48510 * 109.47092 * 329.99890 * 25 23 21
29 29 C 1.47593 * 117.55036 * 309.05802 * 20 19 18
30 30 H 1.08998 * 110.32073 * 172.32589 * 29 20 19
31 31 C 1.46804 * 120.72242 * 183.30356 * 12 10 9
32 32 H 1.09003 * 109.47218 * 179.97438 * 1 2 3
33 33 H 1.08991 * 109.47111 * 300.00374 * 1 2 3
34 34 H 1.09001 * 109.46471 * 60.00602 * 1 2 3
35 35 H 1.09000 * 109.47241 * 239.99391 * 2 1 3
36 36 H 1.09002 * 109.46732 * 119.99874 * 2 1 3
37 37 H 1.09000 * 109.47488 * 59.99543 * 3 2 1
38 38 H 1.09001 * 109.46885 * 299.99145 * 3 2 1
39 39 H 1.08005 * 125.57357 * 179.75414 * 7 5 4
40 40 H 1.08000 * 126.84064 * 179.97438 * 8 7 5
41 41 H 1.09004 * 109.63987 * 354.20633 * 13 12 10
42 42 H 1.09001 * 109.64154 * 114.82284 * 13 12 10
43 43 H 1.08994 * 109.42131 * 185.37652 * 14 13 12
44 44 H 1.09002 * 109.42059 * 65.57325 * 14 13 12
45 45 H 1.09001 * 109.47539 * 58.36283 * 18 17 15
46 46 H 1.09006 * 109.47115 * 178.36498 * 18 17 15
47 47 H 1.08995 * 109.60249 * 171.34081 * 19 18 17
48 48 H 1.09006 * 109.59575 * 291.81022 * 19 18 17
49 49 H 0.96994 * 120.00466 * 179.97438 * 24 23 21
50 50 H 1.09005 * 109.51894 * 5.82296 * 31 12 10
51 51 H 1.08995 * 109.57010 * 245.66690 * 31 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5470 1.4424 0.0006
5 7 4.3343 1.5347 1.0892
6 1 4.0125 1.6113 2.0011
7 6 5.6492 1.5105 0.7259
8 6 5.7285 1.3955 -0.6117
9 6 4.3476 1.3455 -1.1040
10 6 3.9115 1.2221 -2.5051
11 8 2.8577 0.6746 -2.7681
12 7 4.6799 1.7160 -3.4960
13 6 5.9893 2.3159 -3.2030
14 6 6.0204 3.7265 -3.7985
15 6 5.6761 3.6681 -5.2830
16 1 5.6935 4.6829 -5.6806
17 8 6.6313 2.8777 -5.9897
18 6 6.4443 2.8743 -7.4080
19 6 5.0737 2.2757 -7.7408
20 7 4.0499 2.9683 -6.9419
21 6 2.9272 3.4913 -7.5262
22 1 2.3798 4.2809 -7.0330
23 6 2.4930 3.0067 -8.7523
24 7 2.8982 1.8279 -9.1750
25 14 1.3336 4.0275 -9.8026
26 1 2.1240 4.9001 -10.7076
27 1 0.4740 3.1257 -10.6107
28 1 0.4809 4.8684 -8.9244
29 6 4.2774 3.0779 -5.4877
30 1 3.5247 3.7228 -5.0344
31 6 4.2274 1.6662 -4.8917
32 1 -0.3634 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8899
34 1 -0.3632 0.5138 -0.8901
35 1 1.8934 -0.5139 -0.8899
36 1 1.8933 -0.5138 0.8900
37 1 1.6767 1.9564 0.8899
38 1 1.6768 1.9562 -0.8901
39 1 6.4891 1.5731 1.4020
40 1 6.6295 1.3496 -1.2053
41 1 6.1341 2.3704 -2.1240
42 1 6.7778 1.7114 -3.6513
43 1 7.0168 4.1505 -3.6740
44 1 5.2936 4.3539 -3.2824
45 1 6.4954 3.8962 -7.7837
46 1 7.2258 2.2756 -7.8761
47 1 4.8633 2.4112 -8.8017
48 1 5.0701 1.2131 -7.4978
49 1 2.5944 1.4891 -10.0316
50 1 3.2048 1.2907 -4.9299
51 1 4.8794 1.0060 -5.4636
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001074319357.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:51
Heat of formation + Delta-G solvation = 2.747851 kcal
Electronic energy + Delta-G solvation = -32485.597813 eV
Core-core repulsion = 28386.870189 eV
Total energy + Delta-G solvation = -4098.727624 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-41.41608 -39.65924 -38.11953 -35.69824 -34.83155 -34.58773 -32.00376 -31.40495
-30.92106 -29.99557 -29.23451 -27.38626 -26.24363 -24.77174 -23.87707 -22.84772
-21.98061 -21.56451 -21.12053 -20.85222 -18.69976 -18.00114 -17.62186 -16.87262
-16.02286 -15.41719 -15.39136 -15.19946 -14.97015 -14.90440 -14.48316 -14.34527
-14.08954 -13.84776 -13.70197 -13.54557 -13.23692 -12.99193 -12.91423 -12.63208
-12.48068 -12.10455 -12.07696 -11.86500 -11.66472 -11.33169 -11.23426 -11.21144
-11.01759 -10.84901 -10.67372 -10.61246 -10.46963 -10.18745 -10.05041 -9.87349
-9.55365 -9.35042 -8.94804 -8.74744 -8.51947 -8.27205 -7.96782 -6.74380
-5.80937 -3.20696 1.91417 2.37758 3.04753 3.37622 3.44375 3.46190
3.54969 3.78146 4.41902 4.46795 4.64689 4.82458 4.95701 5.06571
5.11800 5.16403 5.28836 5.34774 5.38636 5.42221 5.43967 5.52621
5.62134 5.72575 5.76711 5.78975 5.83213 5.87028 5.88695 6.01236
6.09302 6.13559 6.17321 6.18580 6.26023 6.28202 6.39946 6.41087
6.44449 6.52723 6.70331 6.81264 6.84546 6.91953 7.15639 7.17426
7.35561 7.55501 7.74853 7.96850 8.02774 8.33697 8.76970 9.13587
9.76327 10.32138 11.26403
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012186 B = 0.003475 C = 0.002873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2297.209783 B = 8054.627250 C = 9744.409333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.116 4.116
3 C -0.052 4.052
4 C 0.097 3.903
5 N -0.554 5.554
6 H 0.413 0.587
7 C -0.019 4.019
8 C -0.178 4.178
9 C -0.217 4.217
10 C 0.583 3.417
11 O -0.548 6.548
12 N -0.598 5.598
13 C 0.087 3.913
14 C -0.122 4.122
15 C 0.081 3.919
16 H 0.049 0.951
17 O -0.387 6.387
18 C 0.040 3.960
19 C 0.134 3.866
20 N -0.586 5.586
21 C -0.251 4.251
22 H 0.071 0.929
23 C 0.002 3.998
24 N -0.901 5.901
25 Si 0.905 3.095
26 H -0.288 1.288
27 H -0.291 1.291
28 H -0.279 1.279
29 C 0.136 3.864
30 H 0.073 0.927
31 C 0.109 3.891
32 H 0.054 0.946
33 H 0.047 0.953
34 H 0.059 0.941
35 H 0.084 0.916
36 H 0.051 0.949
37 H 0.064 0.936
38 H 0.093 0.907
39 H 0.167 0.833
40 H 0.156 0.844
41 H 0.109 0.891
42 H 0.070 0.930
43 H 0.074 0.926
44 H 0.074 0.926
45 H 0.040 0.960
46 H 0.080 0.920
47 H 0.101 0.899
48 H 0.027 0.973
49 H 0.255 0.745
50 H 0.088 0.912
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.598 0.734 21.007 22.031
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.154 4.154
3 C -0.090 4.090
4 C -0.020 4.020
5 N -0.149 5.149
6 H 0.249 0.751
7 C -0.146 4.146
8 C -0.202 4.202
9 C -0.226 4.226
10 C 0.372 3.628
11 O -0.427 6.427
12 N -0.331 5.331
13 C -0.035 4.035
14 C -0.161 4.161
15 C 0.022 3.978
16 H 0.067 0.933
17 O -0.306 6.306
18 C -0.038 4.038
19 C 0.009 3.991
20 N -0.308 5.308
21 C -0.380 4.380
22 H 0.088 0.912
23 C -0.196 4.196
24 N -0.545 5.545
25 Si 0.734 3.266
26 H -0.215 1.215
27 H -0.217 1.217
28 H -0.204 1.204
29 C 0.027 3.973
30 H 0.091 0.909
31 C -0.015 4.015
32 H 0.073 0.927
33 H 0.067 0.933
34 H 0.079 0.921
35 H 0.103 0.897
36 H 0.069 0.931
37 H 0.083 0.917
38 H 0.111 0.889
39 H 0.185 0.815
40 H 0.173 0.827
41 H 0.126 0.874
42 H 0.088 0.912
43 H 0.092 0.908
44 H 0.093 0.907
45 H 0.058 0.942
46 H 0.098 0.902
47 H 0.119 0.881
48 H 0.045 0.955
49 H 0.065 0.935
50 H 0.106 0.894
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 6.090 0.277 20.864 21.737
hybrid contribution -0.679 0.668 -0.462 1.059
sum 5.411 0.945 20.403 21.129
Atomic orbital electron populations
1.21740 0.95618 1.01661 1.01669 1.21472 0.95733 0.95396 1.02800
1.20264 0.86775 0.98737 1.03246 1.20241 0.93280 1.02860 0.85642
1.41537 1.06190 1.58639 1.08562 0.75105 1.21725 0.85613 1.10796
0.96485 1.22271 0.96156 1.08307 0.93490 1.20241 0.93104 1.16738
0.92564 1.17408 0.83400 0.78153 0.83803 1.90749 1.23835 1.44051
1.84076 1.48012 1.18735 1.58818 1.07497 1.22384 0.85115 0.93579
1.02463 1.21800 1.02123 0.97601 0.94566 1.22220 0.90325 0.94020
0.91279 0.93340 1.87717 1.52599 1.71157 1.19159 1.23315 0.99926
1.00004 0.80581 1.21544 0.84619 0.93925 0.99034 1.44369 1.20831
1.66310 0.99317 1.19223 1.03486 1.12806 1.02490 0.91161 1.24940
0.98939 0.95643 1.00121 1.70040 1.47664 1.15638 1.21172 0.86247
0.80268 0.79538 0.80499 1.21471 1.21733 1.20430 1.21575 0.94559
0.94438 0.86729 0.90887 1.22237 1.01338 0.99522 0.78417 0.92736
0.93343 0.92148 0.89743 0.93056 0.91734 0.88856 0.81532 0.82665
0.87356 0.91221 0.90776 0.90704 0.94212 0.90216 0.88123 0.95461
0.93507 0.89407 0.91578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16
2 C -0.12 -1.34 5.86 -26.73 -0.16 -1.50 16
3 C -0.05 -0.59 5.01 -27.89 -0.14 -0.73 16
4 C 0.10 1.15 6.42 -81.89 -0.53 0.62 16
5 N -0.55 -4.67 5.90 -9.11 -0.05 -4.72 16
6 H 0.41 2.10 8.96 -40.82 -0.37 1.73 16
7 C -0.02 -0.16 11.89 -16.83 -0.20 -0.36 16
8 C -0.18 -1.97 8.75 -37.50 -0.33 -2.30 16
9 C -0.22 -3.09 5.83 -103.35 -0.60 -3.69 16
10 C 0.58 10.55 7.52 -12.60 -0.09 10.45 16
11 O -0.55 -11.59 14.11 5.25 0.07 -11.51 16
12 N -0.60 -10.64 2.96 -174.10 -0.52 -11.15 16
13 C 0.09 1.24 5.51 -3.70 -0.02 1.22 16
14 C -0.12 -1.75 5.82 -26.91 -0.16 -1.91 16
15 C 0.08 1.49 2.72 -26.89 -0.07 1.41 16
16 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16
17 O -0.39 -7.43 9.59 -35.23 -0.34 -7.77 16
18 C 0.04 0.78 6.98 37.27 0.26 1.04 16
19 C 0.13 3.20 4.99 -3.56 -0.02 3.18 16
20 N -0.59 -14.64 2.73 -163.87 -0.45 -15.09 16
21 C -0.25 -6.88 9.71 -15.06 -0.15 -7.02 16
22 H 0.07 1.90 7.90 -52.49 -0.41 1.49 16
23 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16
24 N -0.90 -25.95 11.02 55.49 0.61 -25.34 16
25 Si 0.90 21.76 29.60 -169.99 -5.03 16.73 16
26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
29 C 0.14 2.91 3.03 -67.07 -0.20 2.71 16
30 H 0.07 1.61 7.99 -51.93 -0.42 1.20 16
31 C 0.11 2.32 5.61 -3.71 -0.02 2.30 16
32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.08 1.25 6.91 -51.93 -0.36 0.90 16
36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.09 1.28 7.64 -51.93 -0.40 0.88 16
39 H 0.17 0.82 8.06 -52.48 -0.42 0.39 16
40 H 0.16 1.52 6.15 -52.49 -0.32 1.19 16
41 H 0.11 1.29 3.14 -51.93 -0.16 1.13 16
42 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16
43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
46 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16
47 H 0.10 2.64 5.90 -51.93 -0.31 2.34 16
48 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16
49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
50 H 0.09 2.15 7.01 -51.93 -0.36 1.79 16
51 H 0.07 1.51 6.56 -51.93 -0.34 1.17 16
LS Contribution 388.77 15.07 5.86 5.86
Total: -1.00 -32.74 388.77 -10.00 -42.74
By element:
Atomic # 1 Polarization: 14.06 SS G_CDS: -8.02 Total: 6.04 kcal
Atomic # 6 Polarization: 6.36 SS G_CDS: -2.14 Total: 4.22 kcal
Atomic # 7 Polarization: -55.90 SS G_CDS: -0.41 Total: -56.30 kcal
Atomic # 8 Polarization: -19.02 SS G_CDS: -0.26 Total: -19.29 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -32.74 -10.00 -42.74 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074319357.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.492 kcal
(2) G-P(sol) polarization free energy of solvation -32.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds