Wall clock time and date at job start Wed Apr 1 2020 04:52:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52995 * 109.47264 * 2 1
4 4 C 1.50697 * 109.47034 * 179.97438 * 3 2 1
5 5 N 1.34659 * 125.80056 * 265.15825 * 4 3 2
6 6 H 0.96999 * 124.85289 * 0.06032 * 5 4 3
7 7 C 1.36443 * 110.29957 * 180.30099 * 5 4 3
8 8 C 1.34480 * 108.85844 * 359.73232 * 7 5 4
9 9 C 1.36764 * 125.80532 * 84.99734 * 4 3 2
10 10 C 1.47262 * 126.94495 * 359.97438 * 9 4 3
11 11 O 1.21629 * 119.99957 * 330.28865 * 10 9 4
12 12 N 1.34771 * 120.00331 * 150.28050 * 10 9 4
13 13 C 1.46980 * 120.72284 * 3.32149 * 12 10 9
14 14 C 1.53147 * 108.45129 * 234.51524 * 13 12 10
15 15 C 1.52511 * 109.79598 * 305.48090 * 14 13 12
16 16 H 1.09001 * 108.41189 * 179.35539 * 15 14 13
17 17 O 1.42703 * 110.61443 * 298.72641 * 15 14 13
18 18 C 1.43064 * 113.87617 * 185.33718 * 17 15 14
19 19 C 1.53222 * 109.46020 * 298.36785 * 18 17 15
20 20 N 1.47179 * 108.69448 * 51.56592 * 19 18 17
21 21 C 1.36941 * 121.22170 * 129.08057 * 20 19 18
22 22 H 1.07999 * 119.99532 * 202.26758 * 21 20 19
23 23 C 1.38804 * 120.00163 * 22.26556 * 21 20 19
24 24 N 1.31621 * 120.00353 * 19.39249 * 23 21 20
25 25 Si 1.86799 * 120.00151 * 199.39093 * 23 21 20
26 26 H 1.48496 * 109.47440 * 89.99915 * 25 23 21
27 27 H 1.48501 * 109.47432 * 210.00109 * 25 23 21
28 28 H 1.48510 * 109.47092 * 329.99890 * 25 23 21
29 29 C 1.47593 * 117.55036 * 309.05802 * 20 19 18
30 30 H 1.08998 * 110.32073 * 172.32589 * 29 20 19
31 31 C 1.46804 * 120.72242 * 183.30356 * 12 10 9
32 32 H 1.09003 * 109.47218 * 179.97438 * 1 2 3
33 33 H 1.08991 * 109.47111 * 300.00374 * 1 2 3
34 34 H 1.09001 * 109.46471 * 60.00602 * 1 2 3
35 35 H 1.09000 * 109.47241 * 239.99391 * 2 1 3
36 36 H 1.09002 * 109.46732 * 119.99874 * 2 1 3
37 37 H 1.09000 * 109.47488 * 59.99543 * 3 2 1
38 38 H 1.09001 * 109.46885 * 299.99145 * 3 2 1
39 39 H 1.08005 * 125.57357 * 179.75414 * 7 5 4
40 40 H 1.08000 * 126.84064 * 179.97438 * 8 7 5
41 41 H 1.09004 * 109.63987 * 354.20633 * 13 12 10
42 42 H 1.09001 * 109.64154 * 114.82284 * 13 12 10
43 43 H 1.08994 * 109.42131 * 185.37652 * 14 13 12
44 44 H 1.09002 * 109.42059 * 65.57325 * 14 13 12
45 45 H 1.09001 * 109.47539 * 58.36283 * 18 17 15
46 46 H 1.09006 * 109.47115 * 178.36498 * 18 17 15
47 47 H 1.08995 * 109.60249 * 171.34081 * 19 18 17
48 48 H 1.09006 * 109.59575 * 291.81022 * 19 18 17
49 49 H 0.96994 * 120.00466 * 179.97438 * 24 23 21
50 50 H 1.09005 * 109.51894 * 5.82296 * 31 12 10
51 51 H 1.08995 * 109.57010 * 245.66690 * 31 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5470 1.4424 0.0006
5 7 4.3343 1.5347 1.0892
6 1 4.0125 1.6113 2.0011
7 6 5.6492 1.5105 0.7259
8 6 5.7285 1.3955 -0.6117
9 6 4.3476 1.3455 -1.1040
10 6 3.9115 1.2221 -2.5051
11 8 2.8577 0.6746 -2.7681
12 7 4.6799 1.7160 -3.4960
13 6 5.9893 2.3159 -3.2030
14 6 6.0204 3.7265 -3.7985
15 6 5.6761 3.6681 -5.2830
16 1 5.6935 4.6829 -5.6806
17 8 6.6313 2.8777 -5.9897
18 6 6.4443 2.8743 -7.4080
19 6 5.0737 2.2757 -7.7408
20 7 4.0499 2.9683 -6.9419
21 6 2.9272 3.4913 -7.5262
22 1 2.3798 4.2809 -7.0330
23 6 2.4930 3.0067 -8.7523
24 7 2.8982 1.8279 -9.1750
25 14 1.3336 4.0275 -9.8026
26 1 2.1240 4.9001 -10.7076
27 1 0.4740 3.1257 -10.6107
28 1 0.4809 4.8684 -8.9244
29 6 4.2774 3.0779 -5.4877
30 1 3.5247 3.7228 -5.0344
31 6 4.2274 1.6662 -4.8917
32 1 -0.3634 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8899
34 1 -0.3632 0.5138 -0.8901
35 1 1.8934 -0.5139 -0.8899
36 1 1.8933 -0.5138 0.8900
37 1 1.6767 1.9564 0.8899
38 1 1.6768 1.9562 -0.8901
39 1 6.4891 1.5731 1.4020
40 1 6.6295 1.3496 -1.2053
41 1 6.1341 2.3704 -2.1240
42 1 6.7778 1.7114 -3.6513
43 1 7.0168 4.1505 -3.6740
44 1 5.2936 4.3539 -3.2824
45 1 6.4954 3.8962 -7.7837
46 1 7.2258 2.2756 -7.8761
47 1 4.8633 2.4112 -8.8017
48 1 5.0701 1.2131 -7.4978
49 1 2.5944 1.4891 -10.0316
50 1 3.2048 1.2907 -4.9299
51 1 4.8794 1.0060 -5.4636
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001074319357.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:50
Heat of formation + Delta-G solvation = -18.623204 kcal
Electronic energy + Delta-G solvation = -32486.524532 eV
Core-core repulsion = 28386.870189 eV
Total energy + Delta-G solvation = -4099.654343 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-42.32558 -41.14096 -39.61469 -37.13221 -36.45766 -35.78955 -33.64391 -33.02115
-32.16151 -30.85491 -30.75395 -29.23208 -27.30413 -26.07951 -25.66033 -24.51899
-23.21093 -22.81136 -22.35885 -21.74350 -20.27028 -19.26953 -18.87668 -18.50011
-17.33671 -17.10457 -16.95780 -16.71555 -16.43528 -16.10298 -15.91194 -15.65359
-15.37120 -15.07368 -14.94860 -14.85185 -14.57439 -14.49144 -14.18274 -13.90361
-13.78209 -13.66405 -13.35285 -13.11801 -13.06063 -12.82084 -12.71497 -12.55839
-12.36471 -12.22418 -12.21230 -12.11040 -12.08027 -11.82397 -11.60096 -11.48975
-11.18237 -10.80545 -10.72698 -10.50264 -9.73809 -9.51409 -9.04197 -8.74339
-7.92765 -5.36457 0.86691 1.44114 1.44393 1.54150 1.59920 2.03109
2.41720 2.46707 2.55206 2.90524 3.20009 3.46613 3.75017 3.81087
4.00129 4.06050 4.09798 4.15904 4.17861 4.23488 4.28222 4.38936
4.43837 4.45868 4.56320 4.58784 4.59962 4.65536 4.70235 4.82448
4.85723 4.90218 4.91432 4.93253 4.98215 5.04823 5.06435 5.12166
5.22671 5.27383 5.31886 5.37592 5.43302 5.51332 5.59919 5.65669
5.83672 6.06145 6.24082 6.36275 6.64145 6.76853 7.03002 7.37476
7.71112 8.24185 9.12181
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012186 B = 0.003475 C = 0.002873
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2297.209783 B = 8054.627250 C = 9744.409333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.112 4.112
3 C -0.050 4.050
4 C 0.096 3.904
5 N -0.535 5.535
6 H 0.433 0.567
7 C 0.014 3.986
8 C -0.201 4.201
9 C -0.254 4.254
10 C 0.573 3.427
11 O -0.595 6.595
12 N -0.601 5.601
13 C 0.087 3.913
14 C -0.114 4.114
15 C 0.086 3.914
16 H 0.049 0.951
17 O -0.382 6.382
18 C 0.052 3.948
19 C 0.141 3.859
20 N -0.603 5.603
21 C -0.266 4.266
22 H 0.067 0.933
23 C -0.048 4.048
24 N -0.932 5.932
25 Si 0.971 3.029
26 H -0.279 1.279
27 H -0.295 1.295
28 H -0.272 1.272
29 C 0.134 3.866
30 H 0.060 0.940
31 C 0.128 3.872
32 H 0.057 0.943
33 H 0.074 0.926
34 H 0.037 0.963
35 H 0.040 0.960
36 H 0.073 0.927
37 H 0.100 0.900
38 H 0.058 0.942
39 H 0.215 0.785
40 H 0.168 0.832
41 H 0.143 0.857
42 H 0.069 0.931
43 H 0.111 0.889
44 H 0.084 0.916
45 H 0.046 0.954
46 H 0.109 0.891
47 H 0.074 0.926
48 H -0.002 1.002
49 H 0.252 0.748
50 H 0.040 0.960
51 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.903 2.489 24.888 26.549
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.150 4.150
3 C -0.088 4.088
4 C -0.023 4.023
5 N -0.131 5.131
6 H 0.273 0.727
7 C -0.114 4.114
8 C -0.224 4.224
9 C -0.264 4.264
10 C 0.365 3.635
11 O -0.478 6.478
12 N -0.332 5.332
13 C -0.034 4.034
14 C -0.153 4.153
15 C 0.027 3.973
16 H 0.067 0.933
17 O -0.301 6.301
18 C -0.026 4.026
19 C 0.016 3.984
20 N -0.326 5.326
21 C -0.395 4.395
22 H 0.085 0.915
23 C -0.243 4.243
24 N -0.578 5.578
25 Si 0.798 3.202
26 H -0.206 1.206
27 H -0.222 1.222
28 H -0.197 1.197
29 C 0.026 3.974
30 H 0.078 0.922
31 C 0.003 3.997
32 H 0.076 0.924
33 H 0.093 0.907
34 H 0.056 0.944
35 H 0.059 0.941
36 H 0.092 0.908
37 H 0.119 0.881
38 H 0.077 0.923
39 H 0.232 0.768
40 H 0.185 0.815
41 H 0.160 0.840
42 H 0.088 0.912
43 H 0.129 0.871
44 H 0.103 0.897
45 H 0.065 0.935
46 H 0.126 0.874
47 H 0.092 0.908
48 H 0.016 0.984
49 H 0.061 0.939
50 H 0.059 0.941
51 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 8.440 2.060 24.811 26.288
hybrid contribution -1.437 0.050 -1.552 2.116
sum 7.003 2.110 23.259 24.382
Atomic orbital electron populations
1.21725 0.94862 1.02013 1.01852 1.21391 0.96430 0.95487 1.01648
1.20210 0.86998 0.98386 1.03252 1.20173 0.93453 1.02435 0.86256
1.41534 1.06006 1.56852 1.08706 0.72650 1.22389 0.86292 1.06708
0.96033 1.22400 0.94787 1.10242 0.94978 1.20077 0.95748 1.20047
0.90518 1.18170 0.82662 0.77039 0.85581 1.90718 1.25997 1.46032
1.85035 1.48054 1.20251 1.59254 1.05669 1.22690 0.82851 0.93187
1.04663 1.21841 1.04440 0.97931 0.91040 1.22249 0.87771 0.93222
0.94076 0.93314 1.87733 1.52276 1.71396 1.18708 1.23159 0.97756
1.00413 0.81241 1.21380 0.86975 0.92649 0.97395 1.44607 1.20693
1.66313 1.01016 1.19514 1.04239 1.12785 1.02992 0.91475 1.25710
1.00880 0.96568 1.01189 1.70201 1.49184 1.17124 1.21292 0.85218
0.78318 0.77927 0.78690 1.20557 1.22181 1.19666 1.21705 0.96763
0.94165 0.84779 0.92198 1.21642 0.98162 0.98868 0.81034 0.92358
0.90664 0.94363 0.94072 0.90836 0.88135 0.92318 0.76840 0.81494
0.84032 0.91244 0.87072 0.89744 0.93544 0.87353 0.90786 0.98399
0.93895 0.94145 0.93698
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.06 9.91 71.98 0.71 -2.34 16
2 C -0.11 -2.60 5.86 30.59 0.18 -2.42 16
3 C -0.05 -1.11 5.01 29.85 0.15 -0.96 16
4 C 0.10 2.11 6.42 41.78 0.27 2.38 16
5 N -0.53 -6.65 5.90 -182.73 -1.08 -7.72 16
6 H 0.43 2.08 8.96 -92.71 -0.83 1.25 16
7 C 0.01 0.16 11.89 83.12 0.99 1.15 16
8 C -0.20 -3.78 8.75 23.62 0.21 -3.57 16
9 C -0.25 -7.06 5.83 -19.04 -0.11 -7.17 16
10 C 0.57 21.89 7.52 86.62 0.65 22.54 16
11 O -0.60 -27.70 14.11 -4.12 -0.06 -27.76 16
12 N -0.60 -22.22 2.96 -822.98 -2.44 -24.66 16
13 C 0.09 2.34 5.51 86.34 0.48 2.82 16
14 C -0.11 -2.99 5.82 30.48 0.18 -2.81 16
15 C 0.09 3.10 2.72 30.49 0.08 3.18 16
16 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16
17 O -0.38 -14.27 9.59 -148.98 -1.43 -15.70 16
18 C 0.05 2.04 6.98 72.06 0.50 2.54 16
19 C 0.14 7.09 4.99 86.32 0.43 7.52 16
20 N -0.60 -31.77 2.73 -672.37 -1.83 -33.60 16
21 C -0.27 -15.25 9.71 84.03 0.82 -14.43 16
22 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16
23 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16
24 N -0.93 -56.52 11.02 21.65 0.24 -56.28 16
25 Si 0.97 46.19 29.60 68.60 2.03 48.22 16
26 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16
27 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16
28 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16
29 C 0.13 6.02 3.03 44.95 0.14 6.16 16
30 H 0.06 2.81 7.99 -2.39 -0.02 2.79 16
31 C 0.13 5.92 5.61 86.43 0.49 6.41 16
32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16
34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16
35 H 0.04 1.32 6.91 -2.39 -0.02 1.30 16
36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
37 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16
38 H 0.06 1.71 7.64 -2.39 -0.02 1.69 16
39 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16
40 H 0.17 2.64 6.15 -2.91 -0.02 2.62 16
41 H 0.14 2.95 3.14 -2.39 -0.01 2.95 16
42 H 0.07 1.90 7.94 -2.39 -0.02 1.88 16
43 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16
44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16
45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
46 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16
47 H 0.07 4.10 5.90 -2.39 -0.01 4.08 16
48 H 0.00 -0.11 7.17 -2.38 -0.02 -0.13 16
49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16
50 H 0.04 2.20 7.01 -2.38 -0.02 2.19 16
51 H 0.04 2.22 6.56 -2.39 -0.02 2.21 16
Total: -1.00 -79.97 388.77 2.12 -77.84
By element:
Atomic # 1 Polarization: 20.90 SS G_CDS: 0.12 Total: 21.02 kcal
Atomic # 6 Polarization: 12.08 SS G_CDS: 6.57 Total: 18.65 kcal
Atomic # 7 Polarization: -117.15 SS G_CDS: -5.11 Total: -122.27 kcal
Atomic # 8 Polarization: -41.97 SS G_CDS: -1.49 Total: -43.46 kcal
Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal
Total: -79.97 2.12 -77.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074319357.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.221 kcal
(2) G-P(sol) polarization free energy of solvation -79.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.744 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.623 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds