Wall clock time and date at job start Wed Apr 1 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47264 * 2 1 4 4 C 1.50697 * 109.47034 * 179.97438 * 3 2 1 5 5 N 1.34659 * 125.80056 * 265.15825 * 4 3 2 6 6 H 0.96999 * 124.85289 * 0.06032 * 5 4 3 7 7 C 1.36443 * 110.29957 * 180.30099 * 5 4 3 8 8 C 1.34480 * 108.85844 * 359.73232 * 7 5 4 9 9 C 1.36764 * 125.80532 * 84.99734 * 4 3 2 10 10 C 1.47262 * 126.94495 * 359.97438 * 9 4 3 11 11 O 1.21629 * 119.99957 * 330.28865 * 10 9 4 12 12 N 1.34771 * 120.00331 * 150.28050 * 10 9 4 13 13 C 1.46980 * 120.72284 * 3.32149 * 12 10 9 14 14 C 1.53147 * 108.45129 * 234.51524 * 13 12 10 15 15 C 1.52511 * 109.79598 * 305.48090 * 14 13 12 16 16 H 1.09001 * 108.41189 * 179.35539 * 15 14 13 17 17 O 1.42703 * 110.61443 * 298.72641 * 15 14 13 18 18 C 1.43064 * 113.87617 * 185.33718 * 17 15 14 19 19 C 1.53222 * 109.46020 * 298.36785 * 18 17 15 20 20 N 1.47179 * 108.69448 * 51.56592 * 19 18 17 21 21 C 1.36941 * 121.22170 * 129.08057 * 20 19 18 22 22 H 1.07999 * 119.99532 * 202.26758 * 21 20 19 23 23 C 1.38804 * 120.00163 * 22.26556 * 21 20 19 24 24 N 1.31621 * 120.00353 * 19.39249 * 23 21 20 25 25 Si 1.86799 * 120.00151 * 199.39093 * 23 21 20 26 26 H 1.48496 * 109.47440 * 89.99915 * 25 23 21 27 27 H 1.48501 * 109.47432 * 210.00109 * 25 23 21 28 28 H 1.48510 * 109.47092 * 329.99890 * 25 23 21 29 29 C 1.47593 * 117.55036 * 309.05802 * 20 19 18 30 30 H 1.08998 * 110.32073 * 172.32589 * 29 20 19 31 31 C 1.46804 * 120.72242 * 183.30356 * 12 10 9 32 32 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47111 * 300.00374 * 1 2 3 34 34 H 1.09001 * 109.46471 * 60.00602 * 1 2 3 35 35 H 1.09000 * 109.47241 * 239.99391 * 2 1 3 36 36 H 1.09002 * 109.46732 * 119.99874 * 2 1 3 37 37 H 1.09000 * 109.47488 * 59.99543 * 3 2 1 38 38 H 1.09001 * 109.46885 * 299.99145 * 3 2 1 39 39 H 1.08005 * 125.57357 * 179.75414 * 7 5 4 40 40 H 1.08000 * 126.84064 * 179.97438 * 8 7 5 41 41 H 1.09004 * 109.63987 * 354.20633 * 13 12 10 42 42 H 1.09001 * 109.64154 * 114.82284 * 13 12 10 43 43 H 1.08994 * 109.42131 * 185.37652 * 14 13 12 44 44 H 1.09002 * 109.42059 * 65.57325 * 14 13 12 45 45 H 1.09001 * 109.47539 * 58.36283 * 18 17 15 46 46 H 1.09006 * 109.47115 * 178.36498 * 18 17 15 47 47 H 1.08995 * 109.60249 * 171.34081 * 19 18 17 48 48 H 1.09006 * 109.59575 * 291.81022 * 19 18 17 49 49 H 0.96994 * 120.00466 * 179.97438 * 24 23 21 50 50 H 1.09005 * 109.51894 * 5.82296 * 31 12 10 51 51 H 1.08995 * 109.57010 * 245.66690 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3343 1.5347 1.0892 6 1 4.0125 1.6113 2.0011 7 6 5.6492 1.5105 0.7259 8 6 5.7285 1.3955 -0.6117 9 6 4.3476 1.3455 -1.1040 10 6 3.9115 1.2221 -2.5051 11 8 2.8577 0.6746 -2.7681 12 7 4.6799 1.7160 -3.4960 13 6 5.9893 2.3159 -3.2030 14 6 6.0204 3.7265 -3.7985 15 6 5.6761 3.6681 -5.2830 16 1 5.6935 4.6829 -5.6806 17 8 6.6313 2.8777 -5.9897 18 6 6.4443 2.8743 -7.4080 19 6 5.0737 2.2757 -7.7408 20 7 4.0499 2.9683 -6.9419 21 6 2.9272 3.4913 -7.5262 22 1 2.3798 4.2809 -7.0330 23 6 2.4930 3.0067 -8.7523 24 7 2.8982 1.8279 -9.1750 25 14 1.3336 4.0275 -9.8026 26 1 2.1240 4.9001 -10.7076 27 1 0.4740 3.1257 -10.6107 28 1 0.4809 4.8684 -8.9244 29 6 4.2774 3.0779 -5.4877 30 1 3.5247 3.7228 -5.0344 31 6 4.2274 1.6662 -4.8917 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3632 0.5138 -0.8901 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.6768 1.9562 -0.8901 39 1 6.4891 1.5731 1.4020 40 1 6.6295 1.3496 -1.2053 41 1 6.1341 2.3704 -2.1240 42 1 6.7778 1.7114 -3.6513 43 1 7.0168 4.1505 -3.6740 44 1 5.2936 4.3539 -3.2824 45 1 6.4954 3.8962 -7.7837 46 1 7.2258 2.2756 -7.8761 47 1 4.8633 2.4112 -8.8017 48 1 5.0701 1.2131 -7.4978 49 1 2.5944 1.4891 -10.0316 50 1 3.2048 1.2907 -4.9299 51 1 4.8794 1.0060 -5.4636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074319357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:50 Heat of formation + Delta-G solvation = -18.623204 kcal Electronic energy + Delta-G solvation = -32486.524532 eV Core-core repulsion = 28386.870189 eV Total energy + Delta-G solvation = -4099.654343 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.32558 -41.14096 -39.61469 -37.13221 -36.45766 -35.78955 -33.64391 -33.02115 -32.16151 -30.85491 -30.75395 -29.23208 -27.30413 -26.07951 -25.66033 -24.51899 -23.21093 -22.81136 -22.35885 -21.74350 -20.27028 -19.26953 -18.87668 -18.50011 -17.33671 -17.10457 -16.95780 -16.71555 -16.43528 -16.10298 -15.91194 -15.65359 -15.37120 -15.07368 -14.94860 -14.85185 -14.57439 -14.49144 -14.18274 -13.90361 -13.78209 -13.66405 -13.35285 -13.11801 -13.06063 -12.82084 -12.71497 -12.55839 -12.36471 -12.22418 -12.21230 -12.11040 -12.08027 -11.82397 -11.60096 -11.48975 -11.18237 -10.80545 -10.72698 -10.50264 -9.73809 -9.51409 -9.04197 -8.74339 -7.92765 -5.36457 0.86691 1.44114 1.44393 1.54150 1.59920 2.03109 2.41720 2.46707 2.55206 2.90524 3.20009 3.46613 3.75017 3.81087 4.00129 4.06050 4.09798 4.15904 4.17861 4.23488 4.28222 4.38936 4.43837 4.45868 4.56320 4.58784 4.59962 4.65536 4.70235 4.82448 4.85723 4.90218 4.91432 4.93253 4.98215 5.04823 5.06435 5.12166 5.22671 5.27383 5.31886 5.37592 5.43302 5.51332 5.59919 5.65669 5.83672 6.06145 6.24082 6.36275 6.64145 6.76853 7.03002 7.37476 7.71112 8.24185 9.12181 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.003475 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.209783 B = 8054.627250 C = 9744.409333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.050 4.050 4 C 0.096 3.904 5 N -0.535 5.535 6 H 0.433 0.567 7 C 0.014 3.986 8 C -0.201 4.201 9 C -0.254 4.254 10 C 0.573 3.427 11 O -0.595 6.595 12 N -0.601 5.601 13 C 0.087 3.913 14 C -0.114 4.114 15 C 0.086 3.914 16 H 0.049 0.951 17 O -0.382 6.382 18 C 0.052 3.948 19 C 0.141 3.859 20 N -0.603 5.603 21 C -0.266 4.266 22 H 0.067 0.933 23 C -0.048 4.048 24 N -0.932 5.932 25 Si 0.971 3.029 26 H -0.279 1.279 27 H -0.295 1.295 28 H -0.272 1.272 29 C 0.134 3.866 30 H 0.060 0.940 31 C 0.128 3.872 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.215 0.785 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.109 0.891 47 H 0.074 0.926 48 H -0.002 1.002 49 H 0.252 0.748 50 H 0.040 0.960 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.903 2.489 24.888 26.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.088 4.088 4 C -0.023 4.023 5 N -0.131 5.131 6 H 0.273 0.727 7 C -0.114 4.114 8 C -0.224 4.224 9 C -0.264 4.264 10 C 0.365 3.635 11 O -0.478 6.478 12 N -0.332 5.332 13 C -0.034 4.034 14 C -0.153 4.153 15 C 0.027 3.973 16 H 0.067 0.933 17 O -0.301 6.301 18 C -0.026 4.026 19 C 0.016 3.984 20 N -0.326 5.326 21 C -0.395 4.395 22 H 0.085 0.915 23 C -0.243 4.243 24 N -0.578 5.578 25 Si 0.798 3.202 26 H -0.206 1.206 27 H -0.222 1.222 28 H -0.197 1.197 29 C 0.026 3.974 30 H 0.078 0.922 31 C 0.003 3.997 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.232 0.768 40 H 0.185 0.815 41 H 0.160 0.840 42 H 0.088 0.912 43 H 0.129 0.871 44 H 0.103 0.897 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.092 0.908 48 H 0.016 0.984 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.440 2.060 24.811 26.288 hybrid contribution -1.437 0.050 -1.552 2.116 sum 7.003 2.110 23.259 24.382 Atomic orbital electron populations 1.21725 0.94862 1.02013 1.01852 1.21391 0.96430 0.95487 1.01648 1.20210 0.86998 0.98386 1.03252 1.20173 0.93453 1.02435 0.86256 1.41534 1.06006 1.56852 1.08706 0.72650 1.22389 0.86292 1.06708 0.96033 1.22400 0.94787 1.10242 0.94978 1.20077 0.95748 1.20047 0.90518 1.18170 0.82662 0.77039 0.85581 1.90718 1.25997 1.46032 1.85035 1.48054 1.20251 1.59254 1.05669 1.22690 0.82851 0.93187 1.04663 1.21841 1.04440 0.97931 0.91040 1.22249 0.87771 0.93222 0.94076 0.93314 1.87733 1.52276 1.71396 1.18708 1.23159 0.97756 1.00413 0.81241 1.21380 0.86975 0.92649 0.97395 1.44607 1.20693 1.66313 1.01016 1.19514 1.04239 1.12785 1.02992 0.91475 1.25710 1.00880 0.96568 1.01189 1.70201 1.49184 1.17124 1.21292 0.85218 0.78318 0.77927 0.78690 1.20557 1.22181 1.19666 1.21705 0.96763 0.94165 0.84779 0.92198 1.21642 0.98162 0.98868 0.81034 0.92358 0.90664 0.94363 0.94072 0.90836 0.88135 0.92318 0.76840 0.81494 0.84032 0.91244 0.87072 0.89744 0.93544 0.87353 0.90786 0.98399 0.93895 0.94145 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.34 16 2 C -0.11 -2.60 5.86 30.59 0.18 -2.42 16 3 C -0.05 -1.11 5.01 29.85 0.15 -0.96 16 4 C 0.10 2.11 6.42 41.78 0.27 2.38 16 5 N -0.53 -6.65 5.90 -182.73 -1.08 -7.72 16 6 H 0.43 2.08 8.96 -92.71 -0.83 1.25 16 7 C 0.01 0.16 11.89 83.12 0.99 1.15 16 8 C -0.20 -3.78 8.75 23.62 0.21 -3.57 16 9 C -0.25 -7.06 5.83 -19.04 -0.11 -7.17 16 10 C 0.57 21.89 7.52 86.62 0.65 22.54 16 11 O -0.60 -27.70 14.11 -4.12 -0.06 -27.76 16 12 N -0.60 -22.22 2.96 -822.98 -2.44 -24.66 16 13 C 0.09 2.34 5.51 86.34 0.48 2.82 16 14 C -0.11 -2.99 5.82 30.48 0.18 -2.81 16 15 C 0.09 3.10 2.72 30.49 0.08 3.18 16 16 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 17 O -0.38 -14.27 9.59 -148.98 -1.43 -15.70 16 18 C 0.05 2.04 6.98 72.06 0.50 2.54 16 19 C 0.14 7.09 4.99 86.32 0.43 7.52 16 20 N -0.60 -31.77 2.73 -672.37 -1.83 -33.60 16 21 C -0.27 -15.25 9.71 84.03 0.82 -14.43 16 22 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 23 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16 24 N -0.93 -56.52 11.02 21.65 0.24 -56.28 16 25 Si 0.97 46.19 29.60 68.60 2.03 48.22 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 29 C 0.13 6.02 3.03 44.95 0.14 6.16 16 30 H 0.06 2.81 7.99 -2.39 -0.02 2.79 16 31 C 0.13 5.92 5.61 86.43 0.49 6.41 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 1.32 6.91 -2.39 -0.02 1.30 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.06 1.71 7.64 -2.39 -0.02 1.69 16 39 H 0.22 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.17 2.64 6.15 -2.91 -0.02 2.62 16 41 H 0.14 2.95 3.14 -2.39 -0.01 2.95 16 42 H 0.07 1.90 7.94 -2.39 -0.02 1.88 16 43 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 47 H 0.07 4.10 5.90 -2.39 -0.01 4.08 16 48 H 0.00 -0.11 7.17 -2.38 -0.02 -0.13 16 49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 50 H 0.04 2.20 7.01 -2.38 -0.02 2.19 16 51 H 0.04 2.22 6.56 -2.39 -0.02 2.21 16 Total: -1.00 -79.97 388.77 2.12 -77.84 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.12 Total: 21.02 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 6.57 Total: 18.65 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -5.11 Total: -122.27 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -1.49 Total: -43.46 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -79.97 2.12 -77.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074319357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.221 kcal (2) G-P(sol) polarization free energy of solvation -79.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds