Wall clock time and date at job start Wed Apr 1 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.53006 * 109.47254 * 240.00132 * 2 1 3 5 5 C 1.50698 * 109.47000 * 119.99993 * 2 1 3 6 6 N 1.29938 * 125.37790 * 60.31705 * 5 2 1 7 7 C 1.36063 * 108.47557 * 180.11893 * 6 5 2 8 8 C 1.47423 * 126.44636 * 179.86130 * 7 6 5 9 9 O 1.21611 * 120.00092 * 179.71051 * 8 7 6 10 10 N 1.34784 * 120.00130 * 359.70679 * 8 7 6 11 11 C 1.46492 * 119.99952 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.95536 * 23.58785 * 11 10 8 13 13 C 1.53958 * 113.65816 * 252.18349 * 11 10 8 14 14 C 1.53946 * 87.29612 * 270.25984 * 13 11 10 15 15 H 1.09001 * 113.66711 * 89.73760 * 14 13 11 16 16 N 1.46497 * 113.66666 * 220.79618 * 14 13 11 17 17 C 1.36939 * 120.00358 * 252.18812 * 16 14 13 18 18 H 1.07997 * 119.99395 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00162 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00135 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99705 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47223 * 120.00226 * 21 19 17 24 24 H 1.48503 * 109.46662 * 239.99641 * 21 19 17 25 25 C 1.52907 * 113.66406 * 154.99852 * 11 10 8 26 26 C 1.52909 * 121.13536 * 323.85453 * 25 11 10 27 27 C 1.53952 * 86.78252 * 209.38099 * 26 25 11 28 28 C 1.53064 * 121.17777 * 215.21812 * 25 11 10 29 29 C 1.36084 * 107.10524 * 359.59209 * 7 6 5 30 30 O 1.34043 * 125.37960 * 239.97521 * 5 2 1 31 31 H 1.08995 * 109.47343 * 300.00300 * 1 2 3 32 32 H 1.09008 * 109.46908 * 59.99930 * 1 2 3 33 33 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47192 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47592 * 300.00319 * 3 2 1 36 36 H 1.09004 * 109.46682 * 59.99861 * 3 2 1 37 37 H 1.09000 * 109.47022 * 300.00096 * 4 2 1 38 38 H 1.08996 * 109.47098 * 60.00517 * 4 2 1 39 39 H 1.08996 * 109.46856 * 179.97438 * 4 2 1 40 40 H 0.96995 * 119.99451 * 359.97438 * 10 8 7 41 41 H 1.09000 * 113.57861 * 155.66000 * 13 11 10 42 42 H 1.08997 * 113.58119 * 24.86399 * 13 11 10 43 43 H 0.97002 * 119.99897 * 72.18620 * 16 14 13 44 44 H 0.97003 * 120.00028 * 180.02562 * 20 19 17 45 45 H 1.09000 * 113.66588 * 94.90895 * 26 25 11 46 46 H 1.09002 * 113.66049 * 323.84790 * 26 25 11 47 47 H 1.09002 * 113.58142 * 139.33437 * 27 26 25 48 48 H 1.09004 * 113.57653 * 270.05037 * 27 26 25 49 49 H 1.09006 * 113.66264 * 36.13819 * 28 25 11 50 50 H 1.09001 * 113.71778 * 265.03884 * 28 25 11 51 51 H 1.08005 * 126.52818 * 180.21396 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7884 -1.9496 1.5359 7 6 2.4048 -2.2322 2.7155 8 6 2.3850 -3.5235 3.4267 9 8 2.9848 -3.6483 4.4772 10 7 1.7022 -4.5656 2.9126 11 6 1.6821 -5.8485 3.6195 12 1 1.8791 -5.7488 4.6869 13 6 2.5209 -6.9437 2.9361 14 6 1.2540 -7.3188 2.1459 15 1 1.1485 -6.7774 1.2057 16 7 1.0591 -8.7632 1.9983 17 6 1.2568 -9.3601 0.7817 18 1 1.5560 -8.7658 -0.0689 19 6 1.0726 -10.7288 0.6420 20 7 0.7084 -11.4530 1.6789 21 14 1.3430 -11.5429 -1.0174 22 1 1.7456 -10.5168 -2.0125 23 1 2.4137 -12.5650 -0.8987 24 1 0.0840 -12.1942 -1.4601 25 6 0.4578 -6.7067 3.2991 26 6 -0.9132 -6.0719 3.0639 27 6 -1.5158 -7.3791 3.6100 28 6 -0.1919 -7.5903 4.3668 29 6 3.0480 -1.1005 3.1123 30 8 2.8066 -0.1657 2.1794 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6768 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2495 40 1 1.2235 -4.4658 2.0749 41 1 2.8566 -7.7250 3.6179 42 1 3.3241 -6.5521 2.3119 43 1 0.7900 -9.2969 2.7623 44 1 0.5801 -12.4095 1.5813 45 1 -1.1377 -5.8923 2.0125 46 1 -1.1073 -5.2040 3.6942 47 1 -2.3728 -7.2238 4.2654 48 1 -1.7024 -8.1280 2.8403 49 1 -0.1829 -7.1500 5.3639 50 1 0.1589 -8.6223 4.3548 51 1 3.6397 -0.9776 4.0075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078624077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:55 Heat of formation + Delta-G solvation = 30.717011 kcal Electronic energy + Delta-G solvation = -31098.103167 eV Core-core repulsion = 27000.588377 eV Total energy + Delta-G solvation = -4097.514790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.70096 -40.54965 -38.83355 -37.38242 -35.03514 -34.96136 -33.99965 -32.16392 -30.20156 -29.69435 -27.80174 -27.71233 -25.47402 -25.17570 -24.09932 -23.94373 -23.49040 -22.01178 -20.98535 -20.05749 -19.75805 -18.22789 -17.79401 -17.05829 -16.95452 -16.60981 -15.92603 -15.57507 -15.15876 -14.86926 -14.68616 -14.57612 -14.39477 -14.28657 -13.76364 -13.74549 -13.34010 -12.77384 -12.70587 -12.59842 -12.45658 -12.10931 -12.06492 -11.97507 -11.78369 -11.69689 -11.64289 -11.45237 -11.32195 -11.30391 -10.97156 -10.88619 -10.80814 -10.57600 -10.22765 -10.13015 -10.02374 -9.82343 -9.60742 -9.36512 -9.25166 -8.83948 -8.64604 -6.95764 -5.78969 -3.07173 0.92467 1.82627 2.27573 3.08112 3.27132 3.42213 3.48371 3.50276 3.53298 4.28899 4.39744 4.44195 4.57814 4.68432 4.73315 4.83301 5.07129 5.12361 5.13233 5.17686 5.19438 5.27747 5.32068 5.32442 5.36421 5.43988 5.44615 5.46473 5.51861 5.63672 5.72162 5.80118 5.85096 5.86591 5.93324 5.99270 6.05792 6.09867 6.15214 6.19987 6.35519 6.45550 6.52629 6.60304 6.67212 6.92071 6.96486 7.06642 7.24463 7.67043 7.70131 8.23078 8.39916 9.51614 10.08976 10.44085 11.43389 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.002669 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.191665 B =10490.161397 C =11565.831563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.032 3.968 3 C -0.147 4.147 4 C -0.141 4.141 5 C 0.206 3.794 6 N -0.453 5.453 7 C -0.066 4.066 8 C 0.601 3.399 9 O -0.542 6.542 10 N -0.682 5.682 11 C 0.127 3.873 12 H 0.097 0.903 13 C -0.174 4.174 14 C 0.192 3.808 15 H 0.076 0.924 16 N -0.707 5.707 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.131 4.131 28 C -0.109 4.109 29 C 0.005 3.995 30 O -0.194 6.194 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.409 0.591 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.222 26.446 -0.370 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.004 4.004 6 N -0.183 5.183 7 C -0.186 4.186 8 C 0.386 3.614 9 O -0.420 6.420 10 N -0.330 5.330 11 C 0.022 3.978 12 H 0.115 0.885 13 C -0.216 4.216 14 C 0.079 3.921 15 H 0.094 0.906 16 N -0.346 5.346 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.123 4.123 26 C -0.163 4.163 27 C -0.168 4.168 28 C -0.147 4.147 29 C -0.069 4.069 30 O -0.080 6.080 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.245 0.755 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.140 25.833 -0.192 25.834 hybrid contribution 0.427 -0.265 -0.454 0.677 sum 0.287 25.568 -0.646 25.578 Atomic orbital electron populations 1.21921 0.91410 1.03807 1.02692 1.19182 0.96627 0.94479 0.86628 1.21928 1.01923 0.93544 1.03104 1.21929 1.01565 1.01524 0.94893 1.26272 0.92898 0.88535 0.92650 1.70721 1.21838 1.13388 1.12328 1.21861 1.04279 0.97126 0.95328 1.16721 0.79210 0.81657 0.83800 1.90812 1.45016 1.83472 1.22676 1.45399 1.50951 1.10394 1.26279 1.21788 0.98084 0.81239 0.96704 0.88482 1.24279 0.99548 0.97145 1.00643 1.21282 0.90849 0.86630 0.93306 0.90585 1.42403 1.80530 1.01158 1.10502 1.19334 1.38677 0.90985 0.88314 0.91127 1.24735 1.02278 0.96409 0.97346 1.69662 1.53624 1.05896 1.28746 0.86142 0.77293 0.79377 0.83526 1.20558 1.21896 1.21900 1.23615 0.92088 0.96952 0.99666 1.22630 0.95956 0.96864 1.00824 1.22740 0.96047 0.97982 1.00042 1.22478 0.95881 1.00289 0.96052 1.25275 1.00987 0.86337 0.94284 1.84384 1.54306 1.40755 1.28561 0.92190 0.90817 0.90847 0.91762 0.90833 0.91791 0.90790 0.90810 0.92139 0.75518 0.89453 0.92266 0.77697 0.93521 0.91678 0.91035 0.92525 0.89177 0.90784 0.90228 0.75391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.46 37.16 0.31 -0.59 16 2 C 0.03 0.23 0.99 -155.66 -0.15 0.08 16 3 C -0.15 -0.79 8.01 37.16 0.30 -0.50 16 4 C -0.14 -0.96 8.45 37.16 0.31 -0.65 16 5 C 0.21 2.11 6.44 -13.08 -0.08 2.02 16 6 N -0.45 -5.59 11.05 -7.66 -0.08 -5.68 16 7 C -0.07 -0.86 6.99 -83.02 -0.58 -1.44 16 8 C 0.60 9.18 7.81 -12.52 -0.10 9.08 16 9 O -0.54 -9.55 16.49 5.27 0.09 -9.46 16 10 N -0.68 -10.13 5.04 -54.45 -0.27 -10.40 16 11 C 0.13 2.05 4.13 -67.48 -0.28 1.77 16 12 H 0.10 1.63 7.46 -51.93 -0.39 1.25 16 13 C -0.17 -3.18 7.68 -25.75 -0.20 -3.38 16 14 C 0.19 3.76 4.27 -67.48 -0.29 3.47 16 15 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 16 N -0.71 -17.17 5.32 -52.99 -0.28 -17.45 16 17 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C -0.12 -1.98 0.92 -154.63 -0.14 -2.13 16 26 C -0.13 -1.87 7.49 -26.28 -0.20 -2.06 16 27 C -0.13 -2.07 8.08 -25.75 -0.21 -2.28 16 28 C -0.11 -1.78 7.48 -26.20 -0.20 -1.97 16 29 C 0.00 0.05 11.95 29.96 0.36 0.41 16 30 O -0.19 -1.96 10.11 6.52 0.07 -1.89 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.41 5.78 8.34 -40.82 -0.34 5.44 16 41 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.39 9.92 5.91 -40.82 -0.24 9.68 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 49 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.08 1.48 6.41 -51.93 -0.33 1.14 16 51 H 0.23 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 417.28 15.07 6.29 6.29 Total: -1.00 -31.67 417.28 -8.34 -40.02 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -8.46 Total: 13.62 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -1.39 Total: -5.32 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.08 Total: -60.44 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.15 Total: -11.35 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -31.67 -8.34 -40.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078624077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.734 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds