Wall clock time and date at job start Wed Apr 1 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47195 * 2 1 4 4 C 1.53006 * 109.47254 * 240.00132 * 2 1 3 5 5 C 1.50698 * 109.47000 * 119.99993 * 2 1 3 6 6 N 1.29938 * 125.37790 * 60.31705 * 5 2 1 7 7 C 1.36063 * 108.47557 * 180.11893 * 6 5 2 8 8 C 1.47423 * 126.44636 * 179.86130 * 7 6 5 9 9 O 1.21611 * 120.00092 * 179.71051 * 8 7 6 10 10 N 1.34784 * 120.00130 * 359.70679 * 8 7 6 11 11 C 1.46492 * 119.99952 * 180.02562 * 10 8 7 12 12 H 1.08997 * 112.95536 * 23.58785 * 11 10 8 13 13 C 1.53958 * 113.65816 * 252.18349 * 11 10 8 14 14 C 1.53946 * 87.29612 * 270.25984 * 13 11 10 15 15 H 1.09001 * 113.66711 * 89.73760 * 14 13 11 16 16 N 1.46497 * 113.66666 * 220.79618 * 14 13 11 17 17 C 1.36939 * 120.00358 * 252.18812 * 16 14 13 18 18 H 1.07997 * 119.99395 * 359.97438 * 17 16 14 19 19 C 1.38809 * 120.00162 * 179.97438 * 17 16 14 20 20 N 1.31615 * 120.00135 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99705 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47223 * 120.00226 * 21 19 17 24 24 H 1.48503 * 109.46662 * 239.99641 * 21 19 17 25 25 C 1.52907 * 113.66406 * 154.99852 * 11 10 8 26 26 C 1.52909 * 121.13536 * 323.85453 * 25 11 10 27 27 C 1.53952 * 86.78252 * 209.38099 * 26 25 11 28 28 C 1.53064 * 121.17777 * 215.21812 * 25 11 10 29 29 C 1.36084 * 107.10524 * 359.59209 * 7 6 5 30 30 O 1.34043 * 125.37960 * 239.97521 * 5 2 1 31 31 H 1.08995 * 109.47343 * 300.00300 * 1 2 3 32 32 H 1.09008 * 109.46908 * 59.99930 * 1 2 3 33 33 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47192 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47592 * 300.00319 * 3 2 1 36 36 H 1.09004 * 109.46682 * 59.99861 * 3 2 1 37 37 H 1.09000 * 109.47022 * 300.00096 * 4 2 1 38 38 H 1.08996 * 109.47098 * 60.00517 * 4 2 1 39 39 H 1.08996 * 109.46856 * 179.97438 * 4 2 1 40 40 H 0.96995 * 119.99451 * 359.97438 * 10 8 7 41 41 H 1.09000 * 113.57861 * 155.66000 * 13 11 10 42 42 H 1.08997 * 113.58119 * 24.86399 * 13 11 10 43 43 H 0.97002 * 119.99897 * 72.18620 * 16 14 13 44 44 H 0.97003 * 120.00028 * 180.02562 * 20 19 17 45 45 H 1.09000 * 113.66588 * 94.90895 * 26 25 11 46 46 H 1.09002 * 113.66049 * 323.84790 * 26 25 11 47 47 H 1.09002 * 113.58142 * 139.33437 * 27 26 25 48 48 H 1.09004 * 113.57653 * 270.05037 * 27 26 25 49 49 H 1.09006 * 113.66264 * 36.13819 * 28 25 11 50 50 H 1.09001 * 113.71778 * 265.03884 * 28 25 11 51 51 H 1.08005 * 126.52818 * 180.21396 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 1.7884 -1.9496 1.5359 7 6 2.4048 -2.2322 2.7155 8 6 2.3850 -3.5235 3.4267 9 8 2.9848 -3.6483 4.4772 10 7 1.7022 -4.5656 2.9126 11 6 1.6821 -5.8485 3.6195 12 1 1.8791 -5.7488 4.6869 13 6 2.5209 -6.9437 2.9361 14 6 1.2540 -7.3188 2.1459 15 1 1.1485 -6.7774 1.2057 16 7 1.0591 -8.7632 1.9983 17 6 1.2568 -9.3601 0.7817 18 1 1.5560 -8.7658 -0.0689 19 6 1.0726 -10.7288 0.6420 20 7 0.7084 -11.4530 1.6789 21 14 1.3430 -11.5429 -1.0174 22 1 1.7456 -10.5168 -2.0125 23 1 2.4137 -12.5650 -0.8987 24 1 0.0840 -12.1942 -1.4601 25 6 0.4578 -6.7067 3.2991 26 6 -0.9132 -6.0719 3.0639 27 6 -1.5158 -7.3791 3.6100 28 6 -0.1919 -7.5903 4.3668 29 6 3.0480 -1.1005 3.1123 30 8 2.8066 -0.1657 2.1794 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6768 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2495 40 1 1.2235 -4.4658 2.0749 41 1 2.8566 -7.7250 3.6179 42 1 3.3241 -6.5521 2.3119 43 1 0.7900 -9.2969 2.7623 44 1 0.5801 -12.4095 1.5813 45 1 -1.1377 -5.8923 2.0125 46 1 -1.1073 -5.2040 3.6942 47 1 -2.3728 -7.2238 4.2654 48 1 -1.7024 -8.1280 2.8403 49 1 -0.1829 -7.1500 5.3639 50 1 0.1589 -8.6223 4.3548 51 1 3.6397 -0.9776 4.0075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078624077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:54 Heat of formation + Delta-G solvation = 9.455024 kcal Electronic energy + Delta-G solvation = -31099.025156 eV Core-core repulsion = 27000.588377 eV Total energy + Delta-G solvation = -4098.436779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.53734 -41.94084 -40.09240 -37.94096 -36.40007 -35.94334 -35.73774 -33.75722 -31.77704 -30.86435 -28.25733 -28.21774 -26.87021 -26.66868 -25.62394 -25.25826 -24.28264 -23.53319 -22.10974 -21.33223 -20.63229 -19.62360 -19.17148 -18.50666 -17.89233 -17.58741 -17.22150 -16.74581 -16.38464 -16.27375 -15.90580 -15.86097 -15.44531 -15.24542 -14.93597 -14.91541 -14.47545 -14.16902 -13.94400 -13.48127 -13.34419 -13.25496 -13.19714 -13.08832 -12.89528 -12.80159 -12.60656 -12.60010 -12.51018 -12.41801 -12.12544 -12.05758 -11.96349 -11.93629 -11.87813 -11.75795 -11.45831 -11.34005 -11.08647 -10.92329 -10.71768 -10.17340 -9.90891 -8.96514 -7.94056 -5.21545 0.03467 0.91701 1.46879 1.47334 1.50282 1.57117 1.95416 2.16989 2.56030 2.72065 3.36643 3.44887 3.54583 3.66467 3.70441 3.75797 3.89218 3.90320 3.94326 4.00178 4.07236 4.10173 4.24077 4.43384 4.53769 4.57364 4.60911 4.71307 4.74484 4.75427 4.81802 4.85014 4.85157 4.90316 4.96170 4.96461 4.99046 5.05095 5.07695 5.11257 5.15639 5.22305 5.29068 5.34761 5.39322 5.48330 5.55860 5.59181 5.63711 6.27225 6.28922 6.56749 7.03468 7.35326 8.11196 8.35862 9.29172 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.002669 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.191665 B =10490.161397 C =11565.831563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 C -0.144 4.144 4 C -0.140 4.140 5 C 0.209 3.791 6 N -0.475 5.475 7 C -0.098 4.098 8 C 0.603 3.397 9 O -0.569 6.569 10 N -0.678 5.678 11 C 0.146 3.854 12 H 0.097 0.903 13 C -0.171 4.171 14 C 0.180 3.820 15 H 0.074 0.926 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.074 0.926 19 C -0.072 4.072 20 N -0.967 5.967 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.296 1.296 24 H -0.293 1.293 25 C -0.113 4.113 26 C -0.111 4.111 27 C -0.128 4.128 28 C -0.109 4.109 29 C 0.026 3.974 30 O -0.190 6.190 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.413 0.587 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.378 0.622 44 H 0.250 0.750 45 H 0.064 0.936 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.057 0.943 49 H 0.099 0.901 50 H 0.051 0.949 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 29.509 -1.052 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.001 4.001 6 N -0.204 5.204 7 C -0.217 4.217 8 C 0.390 3.610 9 O -0.449 6.449 10 N -0.326 5.326 11 C 0.040 3.960 12 H 0.115 0.885 13 C -0.213 4.213 14 C 0.069 3.931 15 H 0.092 0.908 16 N -0.356 5.356 17 C -0.373 4.373 18 H 0.092 0.908 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.798 3.202 22 H -0.192 1.192 23 H -0.223 1.223 24 H -0.221 1.221 25 C -0.115 4.115 26 C -0.148 4.148 27 C -0.166 4.166 28 C -0.147 4.147 29 C -0.048 4.048 30 O -0.075 6.075 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.250 0.750 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.212 0.788 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.076 0.924 49 H 0.118 0.882 50 H 0.070 0.930 51 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -0.426 28.952 -0.896 28.969 hybrid contribution 0.554 -1.106 -0.246 1.261 sum 0.128 27.846 -1.142 27.870 Atomic orbital electron populations 1.21920 0.90760 1.03044 1.03846 1.19439 0.97076 0.95333 0.85263 1.21928 1.01764 0.92184 1.04226 1.21931 1.01293 1.00743 0.95765 1.26995 0.91943 0.88144 0.93058 1.70683 1.22721 1.14614 1.12406 1.21650 1.06730 0.96926 0.96411 1.16971 0.78316 0.82259 0.83454 1.90791 1.46105 1.84099 1.23892 1.45321 1.51114 1.09874 1.26336 1.21495 0.96742 0.81286 0.96464 0.88484 1.24136 0.98972 0.97825 1.00339 1.21507 0.92634 0.84374 0.94546 0.90773 1.42519 1.80798 1.02965 1.09344 1.19688 1.36957 0.91291 0.89343 0.90839 1.25485 1.03259 0.97151 1.00562 1.69811 1.55578 1.05719 1.30645 0.85144 0.76691 0.78319 0.80040 1.19155 1.22344 1.22068 1.23397 0.93016 0.96838 0.98255 1.22592 0.93916 0.97011 1.01303 1.22643 0.96808 0.97554 0.99556 1.22526 0.96011 0.98787 0.97332 1.25778 0.99306 0.85389 0.94372 1.84429 1.54161 1.40477 1.28471 0.92243 0.88470 0.92544 0.92009 0.88657 0.91769 0.92667 0.88405 0.92562 0.75033 0.90706 0.92659 0.78757 0.94079 0.91685 0.88800 0.89999 0.92382 0.88227 0.93013 0.72787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.46 71.98 0.61 -0.89 16 2 C 0.03 0.37 0.99 -52.93 -0.05 0.32 16 3 C -0.14 -1.15 8.01 71.98 0.58 -0.57 16 4 C -0.14 -1.66 8.45 71.98 0.61 -1.05 16 5 C 0.21 3.96 6.44 88.39 0.57 4.53 16 6 N -0.48 -11.30 11.05 -293.05 -3.24 -14.53 16 7 C -0.10 -2.46 6.99 40.41 0.28 -2.18 16 8 C 0.60 17.94 7.81 86.66 0.68 18.62 16 9 O -0.57 -19.60 16.49 -4.07 -0.07 -19.66 16 10 N -0.68 -19.66 5.04 -444.42 -2.24 -21.91 16 11 C 0.15 4.64 4.13 45.29 0.19 4.82 16 12 H 0.10 3.17 7.46 -2.39 -0.02 3.16 16 13 C -0.17 -6.34 7.68 31.23 0.24 -6.10 16 14 C 0.18 7.14 4.27 45.28 0.19 7.34 16 15 H 0.07 2.96 8.10 -2.39 -0.02 2.94 16 16 N -0.72 -35.83 5.32 -321.57 -1.71 -37.54 16 17 C -0.24 -13.33 9.97 84.03 0.84 -12.49 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 20 N -0.97 -59.00 13.06 21.65 0.28 -58.72 16 21 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 C -0.11 -3.66 0.92 -52.26 -0.05 -3.71 16 26 C -0.11 -3.13 7.49 30.89 0.23 -2.90 16 27 C -0.13 -3.95 8.08 31.23 0.25 -3.70 16 28 C -0.11 -3.50 7.48 30.94 0.23 -3.27 16 29 C 0.03 0.50 11.95 67.32 0.80 1.30 16 30 O -0.19 -3.44 10.11 0.41 0.00 -3.44 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.41 11.41 8.34 -92.71 -0.77 10.64 16 41 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.38 20.16 5.91 -92.71 -0.55 19.61 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 49 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 50 H 0.05 1.97 6.41 -2.39 -0.02 1.96 16 51 H 0.26 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -69.44 417.28 1.34 -68.10 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -0.38 Total: 42.91 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.67 Total: -3.59 kcal Atomic # 7 Polarization: -125.79 SS G_CDS: -6.91 Total: -132.70 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -69.44 1.34 -68.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078624077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.556 kcal (2) G-P(sol) polarization free energy of solvation -69.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds