Wall clock time and date at job start Wed Apr 1 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.52994 * 109.47615 * 239.99752 * 2 1 3 5 5 C 1.50700 * 109.46952 * 119.99276 * 2 1 3 6 6 N 1.29945 * 125.37612 * 60.30140 * 5 2 1 7 7 C 1.36067 * 108.47623 * 180.16430 * 6 5 2 8 8 C 1.47417 * 126.44543 * 179.82536 * 7 6 5 9 9 O 1.21615 * 119.99473 * 179.71380 * 8 7 6 10 10 N 1.34770 * 120.00199 * 359.71035 * 8 7 6 11 11 C 1.46504 * 119.99827 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.88389 * 26.84846 * 11 10 8 13 13 C 1.53950 * 113.66645 * 255.49818 * 11 10 8 14 14 C 1.53950 * 87.29592 * 220.79793 * 13 11 10 15 15 H 1.09006 * 113.65941 * 270.17111 * 14 13 11 16 16 N 1.46499 * 113.66414 * 139.20642 * 14 13 11 17 17 C 1.36939 * 119.99933 * 104.77943 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47201 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 120.00466 * 21 19 17 24 24 H 1.48506 * 109.47018 * 240.00565 * 21 19 17 25 25 C 1.52914 * 86.78449 * 24.73365 * 14 13 11 26 26 C 1.52907 * 121.14350 * 209.38294 * 25 14 13 27 27 C 1.53946 * 86.78434 * 209.37620 * 26 25 14 28 28 C 1.52906 * 121.13637 * 100.81404 * 25 14 13 29 29 C 1.36090 * 107.10086 * 359.56017 * 7 6 5 30 30 O 1.34053 * 125.38160 * 239.97699 * 5 2 1 31 31 H 1.08997 * 109.47325 * 300.00512 * 1 2 3 32 32 H 1.09001 * 109.46734 * 60.00535 * 1 2 3 33 33 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47223 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46917 * 299.99353 * 3 2 1 36 36 H 1.08997 * 109.47476 * 59.99580 * 3 2 1 37 37 H 1.09003 * 109.46537 * 300.00014 * 4 2 1 38 38 H 1.09000 * 109.47052 * 59.99581 * 4 2 1 39 39 H 1.08999 * 109.47700 * 180.02562 * 4 2 1 40 40 H 0.96999 * 120.00018 * 0.02562 * 10 8 7 41 41 H 1.08998 * 113.57862 * 106.19494 * 13 11 10 42 42 H 1.08999 * 113.64870 * 335.40788 * 13 11 10 43 43 H 0.97001 * 119.99790 * 284.49917 * 16 14 13 44 44 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 45 45 H 1.09001 * 113.66043 * 323.84687 * 26 25 14 46 46 H 1.09000 * 113.66310 * 94.90448 * 26 25 14 47 47 H 1.09000 * 113.58131 * 270.13296 * 27 26 25 48 48 H 1.08999 * 113.65580 * 139.34498 * 27 26 25 49 49 H 1.08996 * 113.66552 * 265.09839 * 28 25 14 50 50 H 1.09001 * 113.66060 * 36.16135 * 28 25 14 51 51 H 1.08001 * 126.52454 * 180.27813 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 7 1.7881 -1.9494 1.5363 7 6 2.4038 -2.2317 2.7164 8 6 2.3828 -3.5224 3.4283 9 8 2.9820 -3.6469 4.4793 10 7 1.6997 -4.5644 2.9145 11 6 1.6794 -5.8473 3.6218 12 1 1.8205 -5.7406 4.6973 13 6 2.5815 -6.9191 2.9835 14 6 1.4554 -7.9303 3.2653 15 1 1.5334 -8.4114 4.2403 16 7 1.2353 -8.8841 2.1753 17 6 1.6718 -10.1763 2.2976 18 1 2.1822 -10.4911 3.1959 19 6 1.4581 -11.0816 1.2672 20 7 0.8364 -10.6977 0.1724 21 14 2.0541 -12.8440 1.4338 22 1 2.7183 -13.0196 2.7503 23 1 0.8966 -13.7693 1.3365 24 1 3.0208 -13.1445 0.3473 25 6 0.4970 -6.7391 3.2413 26 6 -0.7892 -6.7422 4.0681 27 6 -1.3878 -5.8314 2.9808 28 6 -0.3574 -6.4364 2.0099 29 6 3.0474 -1.1000 3.1128 30 8 2.8066 -0.1654 2.1796 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7489 -1.2490 38 1 1.6767 -0.2075 -2.1391 39 1 3.1301 -0.7217 -1.2489 40 1 1.2221 -4.4652 2.0761 41 1 3.4936 -7.1138 3.5478 42 1 2.7675 -6.7583 1.9216 43 1 0.7768 -8.6013 1.3686 44 1 0.6874 -11.3303 -0.5477 45 1 -1.2665 -7.7201 4.1310 46 1 -0.6868 -6.2560 5.0383 47 1 -1.2366 -4.7687 3.1704 48 1 -2.4200 -6.0731 2.7274 49 1 0.0899 -5.7060 1.3358 50 1 -0.7134 -7.3285 1.4944 51 1 3.6394 -0.9772 4.0077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078624079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:02 Heat of formation + Delta-G solvation = 30.377024 kcal Electronic energy + Delta-G solvation = -31117.176854 eV Core-core repulsion = 27019.647321 eV Total energy + Delta-G solvation = -4097.529533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.69275 -40.60072 -38.79852 -37.37905 -35.00450 -34.88854 -34.04547 -32.40386 -30.18792 -29.69660 -27.80141 -27.71031 -25.50880 -25.30786 -24.26165 -23.74800 -23.46443 -21.98118 -20.55882 -20.35610 -19.82766 -18.40910 -17.54490 -17.11660 -17.05060 -16.52156 -16.10790 -15.59850 -15.20008 -14.93680 -14.60892 -14.49059 -14.46367 -14.35704 -13.88394 -13.67725 -13.03683 -12.82379 -12.77115 -12.70249 -12.41315 -12.13947 -12.10666 -12.06169 -11.83205 -11.66155 -11.49761 -11.44995 -11.30523 -11.28218 -11.00362 -10.96398 -10.80884 -10.71090 -10.24669 -10.13634 -10.04873 -9.88244 -9.63058 -9.43433 -9.24578 -8.81468 -8.66835 -6.94503 -5.78512 -3.06512 0.93174 1.83241 2.28198 3.13137 3.28298 3.43045 3.49315 3.51131 3.55232 4.29237 4.40016 4.45054 4.58746 4.69031 4.73654 4.78486 4.93304 5.04701 5.12873 5.17987 5.18628 5.19785 5.27071 5.32608 5.36866 5.44260 5.44925 5.46654 5.52282 5.63959 5.66899 5.80602 5.85334 5.87334 5.91104 5.94383 6.03580 6.04247 6.17456 6.19282 6.27461 6.34767 6.42541 6.58338 6.63338 6.79438 6.94046 7.08515 7.25366 7.68800 7.71596 8.23331 8.40561 9.52146 10.09603 10.44680 11.44015 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.002450 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.442866 B =11424.368056 C =11895.289920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.032 3.968 3 C -0.147 4.147 4 C -0.141 4.141 5 C 0.206 3.794 6 N -0.454 5.454 7 C -0.067 4.067 8 C 0.599 3.401 9 O -0.543 6.543 10 N -0.691 5.691 11 C 0.143 3.857 12 H 0.112 0.888 13 C -0.174 4.174 14 C 0.182 3.818 15 H 0.080 0.920 16 N -0.707 5.707 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.140 4.140 28 C -0.109 4.109 29 C 0.004 3.996 30 O -0.194 6.194 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.408 0.592 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.098 0.902 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.043 26.077 0.823 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 C -0.205 4.205 4 C -0.199 4.199 5 C -0.004 4.004 6 N -0.183 5.183 7 C -0.187 4.187 8 C 0.384 3.616 9 O -0.421 6.421 10 N -0.341 5.341 11 C 0.038 3.962 12 H 0.129 0.871 13 C -0.216 4.216 14 C 0.069 3.931 15 H 0.097 0.903 16 N -0.345 5.345 17 C -0.371 4.371 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.124 4.124 26 C -0.159 4.159 27 C -0.177 4.177 28 C -0.146 4.146 29 C -0.069 4.069 30 O -0.080 6.080 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.246 0.754 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.222 0.778 44 H 0.064 0.936 45 H 0.105 0.895 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.116 0.884 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.924 25.349 1.236 25.396 hybrid contribution 0.533 -0.413 -0.142 0.690 sum -0.391 24.936 1.094 24.963 Atomic orbital electron populations 1.21919 0.91417 1.03790 1.02691 1.19181 0.96621 0.94486 0.86627 1.21927 1.01927 0.93537 1.03099 1.21928 1.01572 1.01514 0.94898 1.26278 0.92907 0.88531 0.92652 1.70721 1.21891 1.13395 1.12333 1.21910 1.04250 0.97223 0.95302 1.16775 0.79304 0.81724 0.83825 1.90809 1.45097 1.83517 1.22696 1.45859 1.50967 1.10889 1.26361 1.22255 0.96904 0.79776 0.97253 0.87056 1.24298 0.99299 0.97019 1.00986 1.21143 0.91254 0.87392 0.93316 0.90254 1.42330 1.68306 1.07399 1.16489 1.19350 1.30089 0.86585 1.01109 0.91006 1.24745 1.01275 0.98318 0.96574 1.69668 1.47129 1.34436 1.06842 0.86124 0.77876 0.85004 0.77238 1.20527 1.21910 1.21911 1.23427 0.93130 0.97874 0.98008 1.22682 0.96315 1.00101 0.96792 1.22833 0.98588 0.98729 0.97569 1.22456 0.95905 1.01032 0.95241 1.25277 1.01006 0.86367 0.94281 1.84384 1.54314 1.40769 1.28546 0.92198 0.90804 0.90870 0.91763 0.90827 0.91796 0.90813 0.90788 0.92135 0.75441 0.92050 0.90121 0.77842 0.93556 0.89495 0.92097 0.91058 0.91851 0.92314 0.88355 0.75402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.46 37.16 0.31 -0.60 16 2 C 0.03 0.23 0.99 -155.66 -0.15 0.08 16 3 C -0.15 -0.80 8.01 37.16 0.30 -0.51 16 4 C -0.14 -0.98 8.45 37.15 0.31 -0.66 16 5 C 0.21 2.14 6.44 -13.08 -0.08 2.05 16 6 N -0.45 -5.68 11.05 -7.65 -0.08 -5.76 16 7 C -0.07 -0.88 6.99 -83.02 -0.58 -1.46 16 8 C 0.60 9.22 7.81 -12.53 -0.10 9.12 16 9 O -0.54 -9.57 16.53 5.26 0.09 -9.49 16 10 N -0.69 -10.33 5.30 -54.44 -0.29 -10.61 16 11 C 0.14 2.29 4.08 -67.48 -0.28 2.01 16 12 H 0.11 1.82 7.54 -51.93 -0.39 1.43 16 13 C -0.17 -3.19 7.68 -25.75 -0.20 -3.39 16 14 C 0.18 3.59 4.35 -67.48 -0.29 3.30 16 15 H 0.08 1.57 8.12 -51.93 -0.42 1.15 16 16 N -0.71 -17.28 5.34 -52.99 -0.28 -17.56 16 17 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C -0.12 -1.99 1.06 -154.71 -0.16 -2.15 16 26 C -0.12 -1.80 7.84 -26.29 -0.21 -2.01 16 27 C -0.14 -1.92 8.08 -25.75 -0.21 -2.12 16 28 C -0.11 -1.72 6.77 -26.28 -0.18 -1.90 16 29 C 0.00 0.05 11.94 29.96 0.36 0.41 16 30 O -0.19 -1.98 10.11 6.50 0.07 -1.92 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.41 5.86 6.39 -40.82 -0.26 5.60 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.39 9.92 6.12 -40.82 -0.25 9.67 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.88 6.42 -51.93 -0.33 0.54 16 50 H 0.10 1.79 6.96 -51.93 -0.36 1.43 16 51 H 0.23 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 414.59 15.07 6.25 6.25 Total: -1.00 -31.83 414.59 -8.29 -40.12 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -8.33 Total: 13.72 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.40 Total: -5.03 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.07 Total: -60.96 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.15 Total: -11.41 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.83 -8.29 -40.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078624079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.497 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds