Wall clock time and date at job start Wed Apr 1 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47047 * 2 1 4 4 C 1.52994 * 109.47615 * 239.99752 * 2 1 3 5 5 C 1.50700 * 109.46952 * 119.99276 * 2 1 3 6 6 N 1.29945 * 125.37612 * 60.30140 * 5 2 1 7 7 C 1.36067 * 108.47623 * 180.16430 * 6 5 2 8 8 C 1.47417 * 126.44543 * 179.82536 * 7 6 5 9 9 O 1.21615 * 119.99473 * 179.71380 * 8 7 6 10 10 N 1.34770 * 120.00199 * 359.71035 * 8 7 6 11 11 C 1.46504 * 119.99827 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.88389 * 26.84846 * 11 10 8 13 13 C 1.53950 * 113.66645 * 255.49818 * 11 10 8 14 14 C 1.53950 * 87.29592 * 220.79793 * 13 11 10 15 15 H 1.09006 * 113.65941 * 270.17111 * 14 13 11 16 16 N 1.46499 * 113.66414 * 139.20642 * 14 13 11 17 17 C 1.36939 * 119.99933 * 104.77943 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47201 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47080 * 120.00466 * 21 19 17 24 24 H 1.48506 * 109.47018 * 240.00565 * 21 19 17 25 25 C 1.52914 * 86.78449 * 24.73365 * 14 13 11 26 26 C 1.52907 * 121.14350 * 209.38294 * 25 14 13 27 27 C 1.53946 * 86.78434 * 209.37620 * 26 25 14 28 28 C 1.52906 * 121.13637 * 100.81404 * 25 14 13 29 29 C 1.36090 * 107.10086 * 359.56017 * 7 6 5 30 30 O 1.34053 * 125.38160 * 239.97699 * 5 2 1 31 31 H 1.08997 * 109.47325 * 300.00512 * 1 2 3 32 32 H 1.09001 * 109.46734 * 60.00535 * 1 2 3 33 33 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47223 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.46917 * 299.99353 * 3 2 1 36 36 H 1.08997 * 109.47476 * 59.99580 * 3 2 1 37 37 H 1.09003 * 109.46537 * 300.00014 * 4 2 1 38 38 H 1.09000 * 109.47052 * 59.99581 * 4 2 1 39 39 H 1.08999 * 109.47700 * 180.02562 * 4 2 1 40 40 H 0.96999 * 120.00018 * 0.02562 * 10 8 7 41 41 H 1.08998 * 113.57862 * 106.19494 * 13 11 10 42 42 H 1.08999 * 113.64870 * 335.40788 * 13 11 10 43 43 H 0.97001 * 119.99790 * 284.49917 * 16 14 13 44 44 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 45 45 H 1.09001 * 113.66043 * 323.84687 * 26 25 14 46 46 H 1.09000 * 113.66310 * 94.90448 * 26 25 14 47 47 H 1.09000 * 113.58131 * 270.13296 * 27 26 25 48 48 H 1.08999 * 113.65580 * 139.34498 * 27 26 25 49 49 H 1.08996 * 113.66552 * 265.09839 * 28 25 14 50 50 H 1.09001 * 113.66060 * 36.16135 * 28 25 14 51 51 H 1.08001 * 126.52454 * 180.27813 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2306 6 7 1.7881 -1.9494 1.5363 7 6 2.4038 -2.2317 2.7164 8 6 2.3828 -3.5224 3.4283 9 8 2.9820 -3.6469 4.4793 10 7 1.6997 -4.5644 2.9145 11 6 1.6794 -5.8473 3.6218 12 1 1.8205 -5.7406 4.6973 13 6 2.5815 -6.9191 2.9835 14 6 1.4554 -7.9303 3.2653 15 1 1.5334 -8.4114 4.2403 16 7 1.2353 -8.8841 2.1753 17 6 1.6718 -10.1763 2.2976 18 1 2.1822 -10.4911 3.1959 19 6 1.4581 -11.0816 1.2672 20 7 0.8364 -10.6977 0.1724 21 14 2.0541 -12.8440 1.4338 22 1 2.7183 -13.0196 2.7503 23 1 0.8966 -13.7693 1.3365 24 1 3.0208 -13.1445 0.3473 25 6 0.4970 -6.7391 3.2413 26 6 -0.7892 -6.7422 4.0681 27 6 -1.3878 -5.8314 2.9808 28 6 -0.3574 -6.4364 2.0099 29 6 3.0474 -1.1000 3.1128 30 8 2.8066 -0.1654 2.1796 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.6767 -1.7489 -1.2490 38 1 1.6767 -0.2075 -2.1391 39 1 3.1301 -0.7217 -1.2489 40 1 1.2221 -4.4652 2.0761 41 1 3.4936 -7.1138 3.5478 42 1 2.7675 -6.7583 1.9216 43 1 0.7768 -8.6013 1.3686 44 1 0.6874 -11.3303 -0.5477 45 1 -1.2665 -7.7201 4.1310 46 1 -0.6868 -6.2560 5.0383 47 1 -1.2366 -4.7687 3.1704 48 1 -2.4200 -6.0731 2.7274 49 1 0.0899 -5.7060 1.3358 50 1 -0.7134 -7.3285 1.4944 51 1 3.6394 -0.9772 4.0077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078624079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:01 Heat of formation + Delta-G solvation = 8.978914 kcal Electronic energy + Delta-G solvation = -31118.104746 eV Core-core repulsion = 27019.647321 eV Total energy + Delta-G solvation = -4098.457425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.54177 -41.96957 -40.05422 -37.94790 -36.41288 -35.93735 -35.60449 -34.04541 -31.78041 -30.89123 -28.26699 -28.22574 -26.87199 -26.76322 -25.66449 -25.19364 -24.30232 -23.33730 -21.79040 -21.64803 -20.71665 -19.52833 -19.29815 -18.47067 -17.89660 -17.57852 -17.43923 -16.62930 -16.42102 -16.25115 -16.07147 -15.80759 -15.44672 -15.11686 -14.94331 -14.89323 -14.53725 -14.26224 -13.92552 -13.53403 -13.26340 -13.20194 -13.13894 -13.09335 -12.88294 -12.84349 -12.61400 -12.60137 -12.42735 -12.37358 -12.30456 -12.06571 -12.05113 -11.96736 -11.83941 -11.76564 -11.46226 -11.40539 -11.08678 -11.00785 -10.66835 -10.18687 -9.92551 -8.95523 -7.94292 -5.21644 0.02963 0.91102 1.47204 1.47551 1.50008 1.57534 2.00465 2.16881 2.56484 2.72476 3.35737 3.39465 3.55332 3.58959 3.67622 3.73347 3.88516 3.90858 3.93339 3.95856 4.06352 4.12899 4.29235 4.42640 4.49620 4.56218 4.59046 4.68554 4.73388 4.74093 4.74851 4.84203 4.88233 4.92449 4.95525 4.95735 4.96481 5.04167 5.06853 5.08691 5.11377 5.26814 5.28391 5.33954 5.38644 5.44036 5.50862 5.55379 5.65861 6.27416 6.29065 6.56152 7.02611 7.35187 8.11135 8.35842 9.29058 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014272 B = 0.002450 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.442866 B =11424.368056 C =11895.289920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 C -0.143 4.143 4 C -0.140 4.140 5 C 0.209 3.791 6 N -0.476 5.476 7 C -0.100 4.100 8 C 0.600 3.400 9 O -0.569 6.569 10 N -0.688 5.688 11 C 0.161 3.839 12 H 0.115 0.885 13 C -0.170 4.170 14 C 0.166 3.834 15 H 0.079 0.921 16 N -0.718 5.718 17 C -0.240 4.240 18 H 0.075 0.925 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.293 1.293 24 H -0.296 1.296 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.112 4.112 29 C 0.026 3.974 30 O -0.190 6.190 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.377 0.623 44 H 0.250 0.750 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 28.425 1.316 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.029 3.971 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.001 4.001 6 N -0.205 5.205 7 C -0.219 4.219 8 C 0.387 3.613 9 O -0.449 6.449 10 N -0.337 5.337 11 C 0.056 3.944 12 H 0.133 0.867 13 C -0.212 4.212 14 C 0.055 3.945 15 H 0.097 0.903 16 N -0.356 5.356 17 C -0.372 4.372 18 H 0.093 0.907 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.799 3.201 22 H -0.192 1.192 23 H -0.220 1.220 24 H -0.223 1.223 25 C -0.116 4.116 26 C -0.155 4.155 27 C -0.159 4.159 28 C -0.150 4.150 29 C -0.049 4.049 30 O -0.075 6.075 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.249 0.751 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.211 0.789 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.066 27.725 1.762 27.802 hybrid contribution 0.625 -1.047 -0.288 1.253 sum -0.441 26.679 1.474 26.723 Atomic orbital electron populations 1.21918 0.90725 1.03029 1.03878 1.19441 0.97104 0.95348 0.85219 1.21928 1.01753 0.92151 1.04253 1.21931 1.01275 1.00713 0.95824 1.27008 0.91936 0.88132 0.93064 1.70684 1.22802 1.14641 1.12423 1.21712 1.06727 0.97071 0.96395 1.17016 0.78440 0.82327 0.83506 1.90786 1.46133 1.84132 1.23845 1.45757 1.51123 1.10446 1.26385 1.21944 0.95399 0.79879 0.97162 0.86678 1.24132 0.99151 0.97726 1.00173 1.21405 0.93475 0.87707 0.91911 0.90339 1.42447 1.68367 1.07381 1.17393 1.19708 1.28843 0.87818 1.00826 0.90708 1.25503 1.02412 1.02111 0.96610 1.69814 1.49002 1.35427 1.07582 0.85124 0.77091 0.80465 0.77396 1.19202 1.22048 1.22310 1.23295 0.93434 0.95684 0.99161 1.22662 0.94918 1.00126 0.97839 1.22749 0.98505 0.99080 0.95576 1.22402 0.96814 1.00326 0.95412 1.25781 0.99317 0.85406 0.94375 1.84429 1.54167 1.40486 1.28453 0.92213 0.88425 0.92584 0.92033 0.88618 0.91742 0.92755 0.88340 0.92599 0.75063 0.92166 0.91756 0.78878 0.94080 0.90550 0.90333 0.89624 0.90685 0.91691 0.91049 0.72769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.46 71.98 0.61 -0.92 16 2 C 0.03 0.38 0.99 -52.93 -0.05 0.33 16 3 C -0.14 -1.18 8.01 71.98 0.58 -0.61 16 4 C -0.14 -1.73 8.45 71.98 0.61 -1.12 16 5 C 0.21 4.05 6.44 88.39 0.57 4.62 16 6 N -0.48 -11.59 11.05 -293.02 -3.24 -14.83 16 7 C -0.10 -2.56 6.99 40.41 0.28 -2.28 16 8 C 0.60 18.10 7.81 86.66 0.68 18.77 16 9 O -0.57 -19.62 16.53 -4.08 -0.07 -19.68 16 10 N -0.69 -20.23 5.30 -444.41 -2.36 -22.59 16 11 C 0.16 5.10 4.08 45.28 0.18 5.28 16 12 H 0.12 3.64 7.54 -2.39 -0.02 3.62 16 13 C -0.17 -6.32 7.68 31.23 0.24 -6.08 16 14 C 0.17 6.65 4.35 45.28 0.20 6.85 16 15 H 0.08 3.14 8.12 -2.38 -0.02 3.12 16 16 N -0.72 -36.03 5.34 -321.55 -1.72 -37.74 16 17 C -0.24 -13.35 9.98 84.03 0.84 -12.51 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 20 N -0.97 -59.04 13.06 21.65 0.28 -58.75 16 21 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 25 C -0.11 -3.68 1.06 -52.31 -0.06 -3.74 16 26 C -0.12 -3.35 7.84 30.88 0.24 -3.11 16 27 C -0.12 -3.14 8.08 31.23 0.25 -2.89 16 28 C -0.11 -3.54 6.77 30.89 0.21 -3.33 16 29 C 0.03 0.50 11.94 67.32 0.80 1.30 16 30 O -0.19 -3.52 10.11 0.35 0.00 -3.52 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 36 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.41 11.69 6.39 -92.71 -0.59 11.10 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.38 20.12 6.12 -92.71 -0.57 19.55 16 44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.06 1.95 6.42 -2.39 -0.02 1.93 16 50 H 0.07 2.69 6.96 -2.39 -0.02 2.67 16 51 H 0.26 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -69.47 414.59 1.37 -68.11 By element: Atomic # 1 Polarization: 43.88 SS G_CDS: -0.22 Total: 43.66 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 6.65 Total: -3.22 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -7.03 Total: -133.92 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -69.47 1.37 -68.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078624079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.085 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds