Wall clock time and date at job start Wed Apr 1 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.47011 * 2 1 4 4 C 1.52995 * 109.46673 * 119.99740 * 2 1 3 5 5 C 1.50695 * 109.46892 * 239.99786 * 2 1 3 6 6 O 1.34259 * 126.52596 * 241.84953 * 5 2 1 7 7 C 1.34053 * 108.22576 * 179.84126 * 6 5 2 8 8 N 1.29932 * 109.24291 * 0.43515 * 7 6 5 9 9 C 1.36068 * 108.47916 * 359.73233 * 8 7 6 10 10 C 1.47416 * 126.44805 * 180.02562 * 9 8 7 11 11 O 1.21615 * 120.00066 * 174.39592 * 10 9 8 12 12 N 1.34779 * 120.00085 * 354.39545 * 10 9 8 13 13 C 1.46498 * 119.99858 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.89098 * 25.33272 * 13 12 10 15 15 C 1.53951 * 113.66338 * 253.98608 * 13 12 10 16 16 C 1.54142 * 87.22928 * 220.83040 * 15 13 12 17 17 H 1.08996 * 113.72680 * 139.15184 * 16 15 13 18 18 N 1.46504 * 113.65901 * 270.17216 * 16 15 13 19 19 C 1.36941 * 119.99881 * 252.22148 * 18 16 15 20 20 H 1.08005 * 119.99622 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00302 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99528 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00114 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47323 * 90.00133 * 23 21 19 25 25 H 1.48501 * 109.47331 * 209.99910 * 23 21 19 26 26 H 1.48499 * 109.47376 * 330.00118 * 23 21 19 27 27 C 1.52907 * 113.66206 * 156.67759 * 13 12 10 28 28 C 1.52907 * 121.13895 * 13.65252 * 27 13 12 29 29 C 1.53950 * 86.78511 * 209.37880 * 28 27 13 30 30 C 1.52906 * 121.13965 * 265.08851 * 27 13 12 31 31 H 1.09001 * 109.46899 * 55.00356 * 1 2 3 32 32 H 1.09001 * 109.46806 * 295.00349 * 1 2 3 33 33 H 1.09000 * 109.47205 * 175.00111 * 1 2 3 34 34 H 1.09000 * 109.47244 * 65.13754 * 3 2 1 35 35 H 1.09000 * 109.46551 * 185.14277 * 3 2 1 36 36 H 1.09003 * 109.46630 * 305.13863 * 3 2 1 37 37 H 1.08997 * 109.47609 * 60.00311 * 4 2 1 38 38 H 1.09005 * 109.46659 * 179.97438 * 4 2 1 39 39 H 1.08997 * 109.47646 * 299.99603 * 4 2 1 40 40 H 1.08000 * 125.37525 * 180.20822 * 7 6 5 41 41 H 0.96998 * 119.99791 * 359.97438 * 12 10 9 42 42 H 1.09002 * 113.57752 * 335.39808 * 15 13 12 43 43 H 1.08993 * 113.58131 * 106.19019 * 15 13 12 44 44 H 0.97000 * 120.00292 * 72.22142 * 18 16 15 45 45 H 0.97008 * 119.99820 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.66174 * 323.85233 * 28 27 13 47 47 H 1.09001 * 113.66848 * 94.90732 * 28 27 13 48 48 H 1.08996 * 113.58004 * 270.12602 * 29 28 27 49 49 H 1.09002 * 113.58018 * 139.33376 * 29 28 27 50 50 H 1.09006 * 113.66292 * 265.08975 * 30 27 13 51 51 H 1.08997 * 113.66250 * 36.14479 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7104 -1.2304 6 8 2.7786 -1.8261 -1.2603 7 6 3.0126 -2.1398 -2.5424 8 7 2.4478 -1.2561 -3.3094 9 6 1.8208 -0.3399 -2.5227 10 6 1.0560 0.8330 -2.9836 11 8 0.4560 1.5216 -2.1805 12 7 1.0216 1.1424 -4.2949 13 6 0.2619 2.3083 -4.7528 14 1 0.1457 3.0686 -3.9805 15 6 -1.0531 1.9473 -5.4672 16 6 -0.7265 3.0679 -6.4741 17 1 -0.9508 2.8072 -7.5084 18 7 -1.2575 4.3777 -6.0886 19 6 -2.3202 4.9123 -6.7669 20 1 -2.7672 4.3680 -7.5858 21 6 -2.8238 6.1531 -6.4014 22 7 -2.2800 6.8157 -5.4026 23 14 -4.2739 6.8819 -7.3262 24 1 -5.5398 6.4543 -6.6782 25 1 -4.1818 8.3639 -7.3026 26 1 -4.2530 6.4070 -8.7331 27 6 0.7407 2.8646 -6.0942 28 6 1.6856 2.0634 -6.9905 29 6 2.2150 3.4178 -7.4958 30 6 1.7416 4.0186 -6.1598 31 1 -0.3633 0.5894 -0.8419 32 1 -0.3633 0.4344 0.9314 33 1 -0.3633 -1.0237 -0.0895 34 1 1.7538 1.9291 0.9324 35 1 3.1262 1.4438 -0.0921 36 1 1.6035 1.9822 -0.8404 37 1 1.6767 -1.7488 1.2493 38 1 3.1300 -0.7216 1.2490 39 1 1.6767 -0.2073 2.1392 40 1 3.5838 -2.9905 -2.8838 41 1 1.5004 0.5934 -4.9354 42 1 -1.0503 0.9505 -5.9083 43 1 -1.9426 2.1433 -4.8686 44 1 -0.8563 4.8664 -5.3530 45 1 -2.6321 7.6827 -5.1469 46 1 2.4250 1.4831 -6.4385 47 1 1.1735 1.4807 -7.7562 48 1 1.6755 3.8012 -8.3618 49 1 3.2970 3.4421 -7.6258 50 1 1.2740 4.9980 -6.2618 51 1 2.4967 3.9880 -5.3743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078776178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:19 Heat of formation + Delta-G solvation = 44.164082 kcal Electronic energy + Delta-G solvation = -31865.194765 eV Core-core repulsion = 27768.263084 eV Total energy + Delta-G solvation = -4096.931682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.69052 -40.54044 -39.01495 -36.98449 -35.03053 -34.97062 -34.00127 -32.30244 -30.06282 -29.48214 -27.46906 -27.30488 -25.50543 -25.31179 -24.15037 -23.76658 -23.12410 -22.31424 -20.71301 -20.32411 -19.61076 -18.50430 -17.55179 -17.00400 -16.96243 -16.35254 -16.02610 -15.40480 -15.14349 -14.96409 -14.93221 -14.52593 -14.24857 -14.00951 -13.94017 -13.48824 -13.04336 -12.65130 -12.64210 -12.43391 -12.32285 -12.14565 -11.94966 -11.82926 -11.74632 -11.62104 -11.36444 -11.30827 -11.15628 -11.12754 -10.87889 -10.84172 -10.74114 -10.65618 -10.15789 -10.01790 -9.76590 -9.76344 -9.53126 -9.46111 -9.10630 -8.85564 -8.52811 -6.98989 -5.78505 -3.08020 0.96775 1.88245 2.31778 3.25900 3.29566 3.43637 3.48848 3.50370 3.85973 4.26413 4.52529 4.58030 4.74493 4.80514 4.81784 4.91812 4.95165 5.04349 5.21713 5.30459 5.35310 5.40223 5.45843 5.47610 5.49483 5.68141 5.69627 5.72705 5.83709 5.85431 5.88696 5.90351 5.95583 5.99648 6.00547 6.03651 6.07735 6.16156 6.17873 6.39182 6.44336 6.50266 6.59979 6.72049 6.79332 6.81905 6.90540 7.09725 7.23224 7.69931 7.73574 8.35656 8.39698 9.50934 10.06962 10.41745 11.43487 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002847 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.384874 B = 9832.316079 C =11001.579999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.024 3.976 3 C -0.161 4.161 4 C -0.145 4.145 5 C 0.056 3.944 6 O -0.197 6.197 7 C 0.166 3.834 8 N -0.462 5.462 9 C -0.074 4.074 10 C 0.594 3.406 11 O -0.520 6.520 12 N -0.694 5.694 13 C 0.138 3.862 14 H 0.116 0.884 15 C -0.181 4.181 16 C 0.198 3.802 17 H 0.068 0.932 18 N -0.700 5.700 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.123 4.123 28 C -0.116 4.116 29 C -0.133 4.133 30 C -0.125 4.125 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.253 0.747 41 H 0.404 0.596 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.081 0.919 49 H 0.058 0.942 50 H 0.083 0.917 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.641 -18.388 7.769 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 C -0.218 4.218 4 C -0.203 4.203 5 C 0.000 4.000 6 O -0.083 6.083 7 C -0.063 4.063 8 N -0.191 5.191 9 C -0.194 4.194 10 C 0.380 3.620 11 O -0.398 6.398 12 N -0.342 5.342 13 C 0.034 3.966 14 H 0.134 0.866 15 C -0.223 4.223 16 C 0.084 3.916 17 H 0.087 0.913 18 N -0.337 5.337 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.206 4.206 22 N -0.576 5.576 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.126 4.126 28 C -0.154 4.154 29 C -0.171 4.171 30 C -0.162 4.162 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.269 0.731 41 H 0.240 0.760 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.222 0.778 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.102 0.898 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.074 -17.787 7.547 23.329 hybrid contribution -0.187 -0.145 0.177 0.295 sum 12.887 -17.931 7.724 23.394 Atomic orbital electron populations 1.22281 0.91431 1.02516 1.05478 1.19244 0.96906 0.94393 0.87157 1.22276 1.00390 0.93643 1.05443 1.21937 1.01276 1.00392 0.96667 1.23901 0.92762 0.85678 0.97695 1.84367 1.54504 1.36956 1.32508 1.27969 1.01413 1.01028 0.75880 1.70721 1.10630 1.03309 1.34449 1.21573 1.07503 1.00359 0.89921 1.16752 0.79844 0.82266 0.83093 1.90579 1.44948 1.51359 1.52960 1.45904 1.51386 1.30018 1.06931 1.22502 0.91834 0.87096 0.95146 0.86635 1.24325 0.97259 1.00113 1.00649 1.20666 0.88245 0.86828 0.95844 0.91348 1.42106 1.36588 1.15811 1.39242 1.19249 1.06569 1.00150 1.11484 0.91010 1.24750 0.99754 0.97454 0.98648 1.69666 1.43207 1.14967 1.29803 0.86190 0.82528 0.78278 0.79160 1.21678 1.21794 1.20740 1.23607 0.96886 0.97204 0.94910 1.22535 0.97913 0.96500 0.98426 1.22736 0.99674 0.96377 0.98273 1.22625 0.97609 0.99454 0.96542 0.87522 0.91491 0.93436 0.91387 0.93398 0.87794 0.92306 0.92350 0.91332 0.73138 0.76005 0.91219 0.90808 0.77844 0.93406 0.90641 0.91403 0.90039 0.92310 0.89848 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.25 37.16 0.31 -1.57 16 2 C 0.02 0.26 0.75 -155.66 -0.12 0.14 16 3 C -0.16 -1.87 8.19 37.16 0.30 -1.57 16 4 C -0.15 -1.26 8.07 37.16 0.30 -0.96 16 5 C 0.06 0.68 5.73 -35.08 -0.20 0.48 16 6 O -0.20 -2.00 10.19 6.50 0.07 -1.93 16 7 C 0.17 1.40 13.19 51.96 0.69 2.09 16 8 N -0.46 -5.44 11.07 -11.48 -0.13 -5.57 16 9 C -0.07 -0.99 6.83 -83.02 -0.57 -1.56 16 10 C 0.59 9.09 7.51 -12.52 -0.09 9.00 16 11 O -0.52 -8.83 9.49 5.26 0.05 -8.78 16 12 N -0.69 -10.13 5.27 -54.45 -0.29 -10.42 16 13 C 0.14 2.31 4.01 -67.48 -0.27 2.04 16 14 H 0.12 2.25 7.50 -51.93 -0.39 1.86 16 15 C -0.18 -3.23 7.70 -25.64 -0.20 -3.43 16 16 C 0.20 3.83 4.37 -67.38 -0.29 3.54 16 17 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 18 N -0.70 -17.00 4.85 -52.89 -0.26 -17.26 16 19 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 20 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 22 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 23 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.12 -1.99 0.92 -154.71 -0.14 -2.13 16 28 C -0.12 -1.53 7.15 -26.28 -0.19 -1.72 16 29 C -0.13 -1.85 8.08 -25.75 -0.21 -2.06 16 30 C -0.12 -2.02 7.62 -26.28 -0.20 -2.22 16 31 H 0.11 1.55 4.65 -51.93 -0.24 1.31 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.10 1.49 4.55 -51.93 -0.24 1.26 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.25 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.40 5.34 6.71 -40.82 -0.27 5.07 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.39 10.08 7.61 -40.82 -0.31 9.77 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.08 0.90 6.99 -51.93 -0.36 0.54 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -30.82 402.39 -8.01 -38.84 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -8.09 Total: 15.88 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.13 Total: -7.04 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.05 Total: -60.18 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.12 Total: -10.71 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.82 -8.01 -38.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.000 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds