Wall clock time and date at job start Wed Apr 1 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.47011 * 2 1 4 4 C 1.52995 * 109.46673 * 119.99740 * 2 1 3 5 5 C 1.50695 * 109.46892 * 239.99786 * 2 1 3 6 6 O 1.34259 * 126.52596 * 241.84953 * 5 2 1 7 7 C 1.34053 * 108.22576 * 179.84126 * 6 5 2 8 8 N 1.29932 * 109.24291 * 0.43515 * 7 6 5 9 9 C 1.36068 * 108.47916 * 359.73233 * 8 7 6 10 10 C 1.47416 * 126.44805 * 180.02562 * 9 8 7 11 11 O 1.21615 * 120.00066 * 174.39592 * 10 9 8 12 12 N 1.34779 * 120.00085 * 354.39545 * 10 9 8 13 13 C 1.46498 * 119.99858 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.89098 * 25.33272 * 13 12 10 15 15 C 1.53951 * 113.66338 * 253.98608 * 13 12 10 16 16 C 1.54142 * 87.22928 * 220.83040 * 15 13 12 17 17 H 1.08996 * 113.72680 * 139.15184 * 16 15 13 18 18 N 1.46504 * 113.65901 * 270.17216 * 16 15 13 19 19 C 1.36941 * 119.99881 * 252.22148 * 18 16 15 20 20 H 1.08005 * 119.99622 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00302 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99528 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00114 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47323 * 90.00133 * 23 21 19 25 25 H 1.48501 * 109.47331 * 209.99910 * 23 21 19 26 26 H 1.48499 * 109.47376 * 330.00118 * 23 21 19 27 27 C 1.52907 * 113.66206 * 156.67759 * 13 12 10 28 28 C 1.52907 * 121.13895 * 13.65252 * 27 13 12 29 29 C 1.53950 * 86.78511 * 209.37880 * 28 27 13 30 30 C 1.52906 * 121.13965 * 265.08851 * 27 13 12 31 31 H 1.09001 * 109.46899 * 55.00356 * 1 2 3 32 32 H 1.09001 * 109.46806 * 295.00349 * 1 2 3 33 33 H 1.09000 * 109.47205 * 175.00111 * 1 2 3 34 34 H 1.09000 * 109.47244 * 65.13754 * 3 2 1 35 35 H 1.09000 * 109.46551 * 185.14277 * 3 2 1 36 36 H 1.09003 * 109.46630 * 305.13863 * 3 2 1 37 37 H 1.08997 * 109.47609 * 60.00311 * 4 2 1 38 38 H 1.09005 * 109.46659 * 179.97438 * 4 2 1 39 39 H 1.08997 * 109.47646 * 299.99603 * 4 2 1 40 40 H 1.08000 * 125.37525 * 180.20822 * 7 6 5 41 41 H 0.96998 * 119.99791 * 359.97438 * 12 10 9 42 42 H 1.09002 * 113.57752 * 335.39808 * 15 13 12 43 43 H 1.08993 * 113.58131 * 106.19019 * 15 13 12 44 44 H 0.97000 * 120.00292 * 72.22142 * 18 16 15 45 45 H 0.97008 * 119.99820 * 180.02562 * 22 21 19 46 46 H 1.09000 * 113.66174 * 323.85233 * 28 27 13 47 47 H 1.09001 * 113.66848 * 94.90732 * 28 27 13 48 48 H 1.08996 * 113.58004 * 270.12602 * 29 28 27 49 49 H 1.09002 * 113.58018 * 139.33376 * 29 28 27 50 50 H 1.09006 * 113.66292 * 265.08975 * 30 27 13 51 51 H 1.08997 * 113.66250 * 36.14479 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.0324 -0.7104 -1.2304 6 8 2.7786 -1.8261 -1.2603 7 6 3.0126 -2.1398 -2.5424 8 7 2.4478 -1.2561 -3.3094 9 6 1.8208 -0.3399 -2.5227 10 6 1.0560 0.8330 -2.9836 11 8 0.4560 1.5216 -2.1805 12 7 1.0216 1.1424 -4.2949 13 6 0.2619 2.3083 -4.7528 14 1 0.1457 3.0686 -3.9805 15 6 -1.0531 1.9473 -5.4672 16 6 -0.7265 3.0679 -6.4741 17 1 -0.9508 2.8072 -7.5084 18 7 -1.2575 4.3777 -6.0886 19 6 -2.3202 4.9123 -6.7669 20 1 -2.7672 4.3680 -7.5858 21 6 -2.8238 6.1531 -6.4014 22 7 -2.2800 6.8157 -5.4026 23 14 -4.2739 6.8819 -7.3262 24 1 -5.5398 6.4543 -6.6782 25 1 -4.1818 8.3639 -7.3026 26 1 -4.2530 6.4070 -8.7331 27 6 0.7407 2.8646 -6.0942 28 6 1.6856 2.0634 -6.9905 29 6 2.2150 3.4178 -7.4958 30 6 1.7416 4.0186 -6.1598 31 1 -0.3633 0.5894 -0.8419 32 1 -0.3633 0.4344 0.9314 33 1 -0.3633 -1.0237 -0.0895 34 1 1.7538 1.9291 0.9324 35 1 3.1262 1.4438 -0.0921 36 1 1.6035 1.9822 -0.8404 37 1 1.6767 -1.7488 1.2493 38 1 3.1300 -0.7216 1.2490 39 1 1.6767 -0.2073 2.1392 40 1 3.5838 -2.9905 -2.8838 41 1 1.5004 0.5934 -4.9354 42 1 -1.0503 0.9505 -5.9083 43 1 -1.9426 2.1433 -4.8686 44 1 -0.8563 4.8664 -5.3530 45 1 -2.6321 7.6827 -5.1469 46 1 2.4250 1.4831 -6.4385 47 1 1.1735 1.4807 -7.7562 48 1 1.6755 3.8012 -8.3618 49 1 3.2970 3.4421 -7.6258 50 1 1.2740 4.9980 -6.2618 51 1 2.4967 3.9880 -5.3743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078776178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:18 Heat of formation + Delta-G solvation = 23.043231 kcal Electronic energy + Delta-G solvation = -31866.110634 eV Core-core repulsion = 27768.263084 eV Total energy + Delta-G solvation = -4097.847551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.50554 -41.89448 -40.20838 -37.86709 -36.49400 -35.87425 -35.55703 -33.95466 -31.62345 -30.68263 -28.24373 -28.22895 -26.77778 -26.75518 -25.61977 -25.23484 -23.89162 -23.72202 -21.82041 -21.69315 -20.53888 -19.60801 -19.29053 -18.50583 -17.79963 -17.42415 -17.26975 -16.68632 -16.34646 -16.16581 -16.05874 -15.89609 -15.51998 -15.32231 -14.88075 -14.82148 -14.42863 -14.26035 -13.95640 -13.58885 -13.30374 -13.18383 -13.14154 -13.11815 -12.82644 -12.70266 -12.68890 -12.64076 -12.59135 -12.29540 -12.15879 -12.03803 -12.02155 -11.93744 -11.77730 -11.62689 -11.27512 -11.16591 -10.91000 -10.82178 -10.69967 -10.03894 -9.76991 -9.00598 -7.94031 -5.23096 0.05336 1.06864 1.47455 1.49211 1.52341 1.57395 2.13866 2.21669 2.55166 3.12006 3.37104 3.40394 3.42189 3.54815 3.71652 3.78739 3.91371 3.94687 3.95559 4.01810 4.07811 4.18132 4.22287 4.47957 4.53536 4.56853 4.63746 4.71618 4.72845 4.77660 4.82835 4.84007 4.87151 4.94245 4.98766 5.00424 5.03558 5.10699 5.11729 5.18156 5.22222 5.24642 5.28441 5.37540 5.45541 5.53682 5.59030 5.60098 5.77341 6.27313 6.33958 6.64292 7.20838 7.33335 8.08413 8.31640 9.29164 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002847 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.384874 B = 9832.316079 C =11001.579999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.022 3.978 3 C -0.158 4.158 4 C -0.139 4.139 5 C 0.053 3.947 6 O -0.194 6.194 7 C 0.193 3.807 8 N -0.490 5.490 9 C -0.094 4.094 10 C 0.587 3.413 11 O -0.543 6.543 12 N -0.685 5.685 13 C 0.149 3.851 14 H 0.079 0.921 15 C -0.170 4.170 16 C 0.183 3.817 17 H 0.072 0.928 18 N -0.713 5.713 19 C -0.241 4.241 20 H 0.079 0.921 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.290 1.290 25 H -0.297 1.297 26 H -0.267 1.267 27 C -0.115 4.115 28 C -0.097 4.097 29 C -0.124 4.124 30 C -0.131 4.131 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.306 0.694 41 H 0.414 0.586 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.373 0.627 45 H 0.250 0.750 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.045 0.955 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.540 -21.657 7.174 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 C -0.215 4.215 4 C -0.196 4.196 5 C -0.004 4.004 6 O -0.080 6.080 7 C -0.035 4.035 8 N -0.219 5.219 9 C -0.213 4.213 10 C 0.374 3.626 11 O -0.423 6.423 12 N -0.335 5.335 13 C 0.045 3.955 14 H 0.097 0.903 15 C -0.212 4.212 16 C 0.072 3.928 17 H 0.090 0.910 18 N -0.350 5.350 19 C -0.372 4.372 20 H 0.097 0.903 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.217 1.217 25 H -0.224 1.224 26 H -0.191 1.191 27 C -0.117 4.117 28 C -0.135 4.135 29 C -0.161 4.161 30 C -0.169 4.169 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.321 0.679 41 H 0.252 0.748 42 H 0.114 0.886 43 H 0.061 0.939 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.116 0.884 47 H 0.103 0.897 48 H 0.091 0.909 49 H 0.102 0.898 50 H 0.064 0.936 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.989 -21.116 6.908 26.801 hybrid contribution -0.720 0.757 0.394 1.117 sum 14.269 -20.359 7.302 25.912 Atomic orbital electron populations 1.22196 0.92337 1.02213 1.04668 1.19261 0.96210 0.94155 0.88275 1.22195 1.00469 0.94143 1.04660 1.21891 1.01612 1.00452 0.95613 1.23964 0.92849 0.86189 0.97415 1.84402 1.54114 1.36108 1.33407 1.29219 0.98960 1.00607 0.74752 1.70697 1.12072 1.04078 1.35008 1.21297 1.08619 1.00459 0.90907 1.17125 0.79765 0.82809 0.82887 1.90606 1.45860 1.52342 1.53536 1.45683 1.51279 1.29353 1.07173 1.22025 0.91824 0.87147 0.94547 0.90266 1.24187 0.96558 1.00690 0.99800 1.20885 0.90736 0.85089 0.96138 0.90951 1.42222 1.36393 1.17529 1.38833 1.19657 1.06609 0.99995 1.10983 0.90287 1.25553 1.02767 0.98309 0.99979 1.69835 1.45021 1.15169 1.31845 0.85154 0.79179 0.76919 0.78584 1.21714 1.22364 1.19136 1.23452 0.95299 0.98338 0.94609 1.22531 0.96978 0.96238 0.97764 1.22687 1.01188 0.96050 0.96187 1.22642 0.97870 0.97573 0.98839 0.90641 0.90372 0.92942 0.90298 0.92861 0.90832 0.91687 0.91707 0.90169 0.67913 0.74828 0.88552 0.93941 0.79434 0.94091 0.88428 0.89732 0.90909 0.89770 0.93620 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 8.25 71.99 0.59 -3.11 16 2 C 0.02 0.46 0.75 -52.93 -0.04 0.42 16 3 C -0.16 -3.69 8.19 71.98 0.59 -3.10 16 4 C -0.14 -2.09 8.07 71.98 0.58 -1.51 16 5 C 0.05 1.21 5.73 25.18 0.14 1.35 16 6 O -0.19 -3.34 10.19 0.34 0.00 -3.34 16 7 C 0.19 2.52 13.19 130.52 1.72 4.24 16 8 N -0.49 -10.31 11.07 -305.15 -3.38 -13.68 16 9 C -0.09 -2.45 6.83 40.41 0.28 -2.17 16 10 C 0.59 18.31 7.51 86.66 0.65 18.96 16 11 O -0.54 -19.63 9.49 -4.08 -0.04 -19.67 16 12 N -0.69 -19.91 5.27 -444.42 -2.34 -22.25 16 13 C 0.15 5.16 4.01 45.28 0.18 5.35 16 14 H 0.08 3.36 7.50 -2.39 -0.02 3.34 16 15 C -0.17 -6.20 7.70 31.30 0.24 -5.96 16 16 C 0.18 7.22 4.37 45.35 0.20 7.42 16 17 H 0.07 2.79 8.10 -2.39 -0.02 2.77 16 18 N -0.71 -36.24 4.85 -321.23 -1.56 -37.80 16 19 C -0.24 -13.40 9.97 84.03 0.84 -12.56 16 20 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 22 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 23 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 27 C -0.11 -3.67 0.92 -52.31 -0.05 -3.72 16 28 C -0.10 -2.30 7.15 30.88 0.22 -2.08 16 29 C -0.12 -3.20 8.08 31.23 0.25 -2.95 16 30 C -0.13 -4.31 7.62 30.88 0.24 -4.08 16 31 H 0.08 2.32 4.65 -2.39 -0.01 2.31 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 2.23 4.55 -2.39 -0.01 2.22 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.31 0.05 8.06 -2.91 -0.02 0.02 16 41 H 0.41 10.24 6.71 -92.71 -0.62 9.62 16 42 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.37 20.80 7.61 -92.71 -0.71 20.09 16 45 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 46 H 0.10 1.95 6.99 -2.39 -0.02 1.94 16 47 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.04 1.84 7.58 -2.38 -0.02 1.83 16 51 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -71.56 402.39 1.73 -69.83 By element: Atomic # 1 Polarization: 45.88 SS G_CDS: -0.37 Total: 45.51 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 7.10 Total: -7.32 kcal Atomic # 7 Polarization: -126.71 SS G_CDS: -7.00 Total: -133.70 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -71.56 1.73 -69.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078776178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.874 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds