Wall clock time and date at job start Wed Apr 1 2020 04:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50708 * 109.46950 * 2 1 4 4 N 1.29940 * 125.37761 * 90.27576 * 3 2 1 5 5 C 1.36063 * 108.47276 * 180.19125 * 4 3 2 6 6 C 1.47424 * 126.44443 * 179.86424 * 5 4 3 7 7 O 1.21615 * 119.99726 * 179.68574 * 6 5 4 8 8 N 1.34769 * 119.99906 * 359.68627 * 6 5 4 9 9 C 1.46509 * 119.99850 * 180.02562 * 8 6 5 10 10 H 1.09005 * 112.86448 * 26.76330 * 9 8 6 11 11 C 1.54156 * 113.63637 * 255.49617 * 9 8 6 12 12 H 1.09002 * 114.73247 * 104.22158 * 11 9 8 13 13 C 1.53054 * 111.68815 * 333.50874 * 11 9 8 14 14 C 1.53020 * 109.41138 * 213.59748 * 13 11 9 15 15 C 1.52940 * 108.92916 * 64.64908 * 14 13 11 16 16 N 1.45102 * 110.23253 * 303.46734 * 15 14 13 17 17 C 1.36936 * 117.89958 * 218.18496 * 16 15 14 18 18 H 1.07999 * 120.00414 * 321.89659 * 17 16 15 19 19 C 1.38812 * 119.99722 * 141.89355 * 17 16 15 20 20 N 1.31625 * 120.00077 * 157.66221 * 19 17 16 21 21 Si 1.86802 * 120.00154 * 337.66144 * 19 17 16 22 22 H 1.48502 * 109.46812 * 95.63216 * 21 19 17 23 23 H 1.48501 * 109.47313 * 215.63343 * 21 19 17 24 24 H 1.48504 * 109.47189 * 335.63588 * 21 19 17 25 25 C 1.45094 * 123.61245 * 37.55547 * 16 15 14 26 26 H 1.08996 * 112.25881 * 204.84164 * 25 16 15 27 27 C 1.53387 * 113.74121 * 75.20328 * 25 16 15 28 28 C 1.53004 * 113.68672 * 331.26643 * 27 25 16 29 29 C 1.52995 * 113.68892 * 102.40224 * 27 25 16 30 30 C 1.36095 * 107.10673 * 359.59812 * 5 4 3 31 31 O 1.34047 * 125.37514 * 270.02924 * 3 2 1 32 32 H 1.09000 * 109.47396 * 59.99830 * 1 2 3 33 33 H 1.09003 * 109.46599 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47238 * 299.99514 * 1 2 3 35 35 H 1.08994 * 109.47019 * 240.00270 * 2 1 3 36 36 H 1.08993 * 109.47355 * 119.99807 * 2 1 3 37 37 H 0.97000 * 120.00588 * 359.97438 * 8 6 5 38 38 H 1.09007 * 109.48314 * 333.58323 * 13 11 9 39 39 H 1.09001 * 109.48054 * 93.60238 * 13 11 9 40 40 H 1.09003 * 109.56252 * 184.47897 * 14 13 11 41 41 H 1.08998 * 109.56045 * 304.81765 * 14 13 11 42 42 H 1.09001 * 109.40581 * 62.78177 * 15 14 13 43 43 H 1.09002 * 109.40445 * 182.61272 * 15 14 13 44 44 H 0.97000 * 119.99579 * 179.97438 * 20 19 17 45 45 H 1.08994 * 109.47098 * 90.81514 * 28 27 25 46 46 H 1.09007 * 109.46763 * 210.80730 * 28 27 25 47 47 H 1.08997 * 109.47238 * 330.80792 * 28 27 25 48 48 H 1.08999 * 109.47089 * 60.00023 * 29 27 25 49 49 H 1.09005 * 109.47379 * 179.97438 * 29 27 25 50 50 H 1.08993 * 109.47470 * 300.00079 * 29 27 25 51 51 H 1.07993 * 126.52655 * 180.20551 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2879 2.1285 1.0595 5 6 2.7159 3.3580 0.6638 6 6 3.1101 4.4731 1.5439 7 8 3.4820 5.5259 1.0618 8 7 3.0582 4.3259 2.8825 9 6 3.4493 5.4343 3.7571 10 1 3.3140 6.4101 3.2904 11 6 4.8334 5.2479 4.4097 12 1 5.6293 5.8495 3.9708 13 6 5.1986 3.7680 4.5484 14 6 6.0251 3.5652 5.8201 15 6 5.1569 3.8983 7.0344 16 7 4.6410 5.2503 6.9266 17 6 4.5651 6.0002 8.0699 18 1 4.2751 5.5369 9.0014 19 6 4.8609 7.3558 8.0316 20 7 4.3885 8.1591 8.9611 21 14 5.9295 8.0403 6.6608 22 1 5.0643 8.5737 5.5782 23 1 6.7824 9.1318 7.1960 24 1 6.7913 6.9594 6.1183 25 6 4.2161 5.8505 5.6759 26 1 4.2756 6.9386 5.6988 27 6 2.8594 5.3392 5.1750 28 6 2.5417 3.9083 5.6139 29 6 1.7051 6.3112 5.4270 30 6 2.7175 3.3625 -0.6971 31 8 2.2905 2.1528 -1.0930 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.7611 3.4863 3.2670 38 1 4.2874 3.1727 4.6081 39 1 5.7814 3.4547 3.6821 40 1 6.3537 2.5276 5.8802 41 1 6.8931 4.2241 5.8003 42 1 4.3146 3.2079 7.0778 43 1 5.7518 3.8012 7.9425 44 1 4.5956 9.1063 8.9345 45 1 2.0036 3.9299 6.5615 46 1 1.9245 3.4246 4.8566 47 1 3.4704 3.3510 5.7360 48 1 1.9054 7.2533 4.9167 49 1 0.7786 5.8818 5.0458 50 1 1.6089 6.4914 6.4977 51 1 3.0065 4.1832 -1.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087281975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:17 Heat of formation + Delta-G solvation = 44.726846 kcal Electronic energy + Delta-G solvation = -32601.311661 eV Core-core repulsion = 28504.404383 eV Total energy + Delta-G solvation = -4096.907278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.69895 -41.13971 -38.88752 -35.35866 -35.27898 -34.29086 -33.24091 -32.84820 -30.97011 -30.09819 -29.76927 -27.05251 -25.91445 -25.27871 -24.73264 -23.45655 -22.78050 -21.64406 -20.96561 -20.19552 -19.48123 -18.44892 -17.88894 -17.11581 -16.83917 -16.64035 -15.79893 -15.59980 -15.20397 -14.97209 -14.83181 -14.38736 -14.11998 -13.83166 -13.74796 -13.51883 -13.42518 -13.13360 -12.82478 -12.50417 -12.33211 -12.25453 -12.19259 -11.88200 -11.69615 -11.66682 -11.56107 -11.52899 -11.34206 -11.09156 -10.91878 -10.73466 -10.60630 -10.35760 -10.22107 -9.94366 -9.77068 -9.63407 -9.43401 -9.30460 -9.25612 -8.62837 -8.45184 -6.70878 -5.99943 -3.41450 0.88787 1.77640 2.27246 3.13234 3.25675 3.31685 3.48244 3.54165 3.59262 4.43690 4.51780 4.55702 4.65422 4.72728 4.86653 4.90320 4.95251 5.07106 5.22288 5.27199 5.28096 5.28917 5.33369 5.39227 5.49531 5.50746 5.65391 5.70938 5.79622 5.83768 5.86485 5.96072 6.00394 6.13618 6.16607 6.21170 6.35549 6.36834 6.40849 6.47830 6.56378 6.57503 6.72833 6.77369 6.80628 6.93895 6.98555 7.09781 7.19638 7.66719 8.09532 8.22604 8.41519 9.07138 9.74208 10.09409 11.15335 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.003114 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.001807 B = 8989.378269 C = 9316.875351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.027 4.027 3 C 0.196 3.804 4 N -0.458 5.458 5 C -0.066 4.066 6 C 0.597 3.403 7 O -0.541 6.541 8 N -0.689 5.689 9 C 0.124 3.876 10 H 0.110 0.890 11 C -0.138 4.138 12 H 0.073 0.927 13 C -0.103 4.103 14 C -0.139 4.139 15 C 0.147 3.853 16 N -0.581 5.581 17 C -0.275 4.275 18 H 0.081 0.919 19 C 0.039 3.961 20 N -0.898 5.898 21 Si 0.866 3.134 22 H -0.284 1.284 23 H -0.301 1.301 24 H -0.265 1.265 25 C 0.179 3.821 26 H 0.087 0.913 27 C -0.106 4.106 28 C -0.140 4.140 29 C -0.128 4.128 30 C 0.007 3.993 31 O -0.197 6.197 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.409 0.591 38 H 0.078 0.922 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.263 0.737 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.042 0.958 50 H 0.070 0.930 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -16.497 -18.512 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.013 4.013 4 N -0.188 5.188 5 C -0.186 4.186 6 C 0.382 3.618 7 O -0.419 6.419 8 N -0.339 5.339 9 C 0.020 3.980 10 H 0.128 0.872 11 C -0.159 4.159 12 H 0.092 0.908 13 C -0.140 4.140 14 C -0.178 4.178 15 C 0.022 3.978 16 N -0.300 5.300 17 C -0.404 4.404 18 H 0.098 0.902 19 C -0.161 4.161 20 N -0.539 5.539 21 Si 0.695 3.305 22 H -0.212 1.212 23 H -0.229 1.229 24 H -0.189 1.189 25 C 0.070 3.930 26 H 0.105 0.895 27 C -0.110 4.110 28 C -0.196 4.196 29 C -0.186 4.186 30 C -0.066 4.066 31 O -0.083 6.083 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.247 0.753 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.108 0.892 48 H 0.067 0.933 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.834 -15.832 -18.109 24.751 hybrid contribution 0.675 0.728 -1.395 1.712 sum -5.159 -15.103 -19.504 25.202 Atomic orbital electron populations 1.21800 0.92883 1.03159 1.03127 1.20125 0.97004 0.83880 1.05468 1.26375 0.99594 0.96994 0.78338 1.70771 1.15542 1.02581 1.29909 1.21921 1.09311 0.94264 0.93125 1.16813 0.77707 0.85011 0.82315 1.90818 1.48343 1.27267 1.75487 1.45879 1.65396 1.17841 1.04757 1.22905 0.95882 0.90272 0.88976 0.87179 1.23316 0.96468 0.97655 0.98446 0.90846 1.21490 1.00320 0.94810 0.97384 1.21914 0.99327 1.00175 0.96355 1.20846 0.94454 0.86744 0.95773 1.43246 1.71410 1.11530 1.03844 1.18861 1.41710 0.90954 0.88838 0.90157 1.25475 0.97762 0.96601 0.96310 1.69871 1.44044 1.04038 1.35899 0.87108 0.82364 0.78630 0.82363 1.21228 1.22911 1.18947 1.21374 0.90475 0.96736 0.84464 0.89525 1.22893 0.98504 0.96983 0.92647 1.22040 1.02516 0.94740 1.00354 1.21632 0.96364 0.97714 1.02852 1.25285 0.99054 0.86523 0.95776 1.84381 1.63453 1.22574 1.37931 0.92136 0.90723 0.91543 0.88723 0.87304 0.75311 0.90399 0.93296 0.92436 0.92115 0.95598 0.92353 0.92740 0.91844 0.94351 0.89220 0.93344 0.93923 0.91052 0.75355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.20 1.88 7.56 -13.07 -0.10 1.78 16 4 N -0.46 -5.56 11.06 -7.65 -0.08 -5.64 16 5 C -0.07 -0.87 6.99 -83.02 -0.58 -1.45 16 6 C 0.60 9.39 7.81 -12.52 -0.10 9.29 16 7 O -0.54 -9.91 16.53 5.26 0.09 -9.82 16 8 N -0.69 -10.55 4.32 -53.85 -0.23 -10.78 16 9 C 0.12 2.18 3.58 -66.88 -0.24 1.94 16 10 H 0.11 2.06 7.37 -51.93 -0.38 1.68 16 11 C -0.14 -2.59 4.29 -89.88 -0.39 -2.97 16 12 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.10 -1.67 4.65 -26.69 -0.12 -1.80 16 14 C -0.14 -2.34 6.04 -26.75 -0.16 -2.50 16 15 C 0.15 2.82 5.60 -4.82 -0.03 2.80 16 16 N -0.58 -13.18 2.19 -167.48 -0.37 -13.54 16 17 C -0.27 -7.42 9.65 -15.06 -0.15 -7.56 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 19 C 0.04 1.11 5.24 -17.43 -0.09 1.02 16 20 N -0.90 -26.95 13.97 55.49 0.78 -26.17 16 21 Si 0.87 22.13 25.01 -169.99 -4.25 17.88 16 22 H -0.28 -7.13 6.65 56.52 0.38 -6.75 16 23 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 24 H -0.26 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.18 3.81 2.06 -68.38 -0.14 3.67 16 26 H 0.09 2.10 3.58 -51.93 -0.19 1.91 16 27 C -0.11 -1.93 1.34 -153.85 -0.21 -2.14 16 28 C -0.14 -2.26 6.78 37.16 0.25 -2.00 16 29 C -0.13 -2.32 9.16 37.16 0.34 -1.98 16 30 C 0.01 0.08 11.95 29.96 0.36 0.43 16 31 O -0.20 -1.93 10.73 6.50 0.07 -1.86 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.41 5.79 5.44 -40.82 -0.22 5.57 16 38 H 0.08 1.18 3.69 -51.93 -0.19 0.99 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.03 0.47 5.88 -51.93 -0.31 0.17 16 43 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 46 H 0.04 0.53 6.54 -51.93 -0.34 0.19 16 47 H 0.09 1.44 2.00 -51.93 -0.10 1.34 16 48 H 0.05 0.87 7.95 -51.93 -0.41 0.45 16 49 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 51 H 0.23 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -32.26 386.25 -6.98 -39.24 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.63 Total: 7.06 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.16 Total: -2.17 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.09 Total: -56.14 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.16 Total: -11.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.25 Total: 17.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.26 -6.98 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087281975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.967 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds