Wall clock time and date at job start Wed Apr 1 2020 04:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.47269 * 2 1 4 4 N 1.29932 * 125.37692 * 90.30658 * 3 2 1 5 5 C 1.36062 * 108.47895 * 180.11832 * 4 3 2 6 6 C 1.47418 * 126.45655 * 179.85953 * 5 4 3 7 7 O 1.21612 * 120.00641 * 179.68489 * 6 5 4 8 8 N 1.34777 * 119.99592 * 359.69044 * 6 5 4 9 9 C 1.46500 * 120.00135 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.92580 * 26.82798 * 9 8 6 11 11 C 1.54149 * 113.64289 * 255.49635 * 9 8 6 12 12 H 1.09003 * 114.73484 * 26.75735 * 11 9 8 13 13 C 1.53055 * 111.68491 * 157.46465 * 11 9 8 14 14 C 1.53032 * 109.40938 * 146.40154 * 13 11 9 15 15 C 1.52945 * 108.92954 * 295.35359 * 14 13 11 16 16 N 1.45893 * 109.88743 * 57.35004 * 15 14 13 17 17 C 1.36932 * 118.48586 * 140.67619 * 16 15 14 18 18 H 1.08004 * 119.99902 * 206.33270 * 17 16 15 19 19 C 1.38810 * 120.00322 * 26.32585 * 17 16 15 20 20 N 1.31625 * 119.99745 * 14.00179 * 19 17 16 21 21 Si 1.86791 * 120.00256 * 194.00133 * 19 17 16 22 22 H 1.48508 * 109.47318 * 59.99992 * 21 19 17 23 23 H 1.48507 * 109.47275 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47525 * 300.00209 * 21 19 17 25 25 C 1.45102 * 123.02575 * 320.65036 * 16 15 14 26 26 H 1.09003 * 112.25119 * 157.10390 * 25 16 15 27 27 C 1.53385 * 114.62572 * 286.24198 * 25 16 15 28 28 C 1.52995 * 113.68973 * 257.76049 * 27 25 16 29 29 C 1.53003 * 113.68478 * 28.89798 * 27 25 16 30 30 C 1.36099 * 107.10206 * 359.60061 * 5 4 3 31 31 O 1.34053 * 125.37732 * 269.97672 * 3 2 1 32 32 H 1.09007 * 109.46720 * 59.99737 * 1 2 3 33 33 H 1.08992 * 109.47357 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47225 * 300.00364 * 1 2 3 35 35 H 1.08998 * 109.47225 * 239.99636 * 2 1 3 36 36 H 1.08998 * 109.46852 * 119.99664 * 2 1 3 37 37 H 0.97001 * 119.99860 * 359.97438 * 8 6 5 38 38 H 1.08992 * 109.48700 * 26.41827 * 13 11 9 39 39 H 1.09000 * 109.49217 * 266.38102 * 13 11 9 40 40 H 1.09000 * 109.55759 * 175.51905 * 14 13 11 41 41 H 1.08998 * 109.56012 * 55.18888 * 14 13 11 42 42 H 1.08998 * 109.39931 * 297.22018 * 15 14 13 43 43 H 1.08999 * 109.39530 * 177.47351 * 15 14 13 44 44 H 0.96994 * 119.99972 * 180.02562 * 20 19 17 45 45 H 1.08995 * 109.47298 * 60.00486 * 28 27 25 46 46 H 1.09008 * 109.47104 * 180.02562 * 28 27 25 47 47 H 1.08997 * 109.47479 * 299.99974 * 28 27 25 48 48 H 1.08995 * 109.47633 * 27.90193 * 29 27 25 49 49 H 1.09003 * 109.47186 * 147.90862 * 29 27 25 50 50 H 1.09000 * 109.47201 * 267.89930 * 29 27 25 51 51 H 1.07998 * 126.52773 * 180.20321 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2885 2.1282 1.0594 5 6 2.7180 3.3572 0.6639 6 6 3.1131 4.4720 1.5438 7 8 3.4863 5.5243 1.0619 8 7 3.0608 4.3250 2.8825 9 6 3.4539 5.4326 3.7571 10 1 3.3199 6.4091 3.2918 11 6 4.8375 5.2437 4.4099 12 1 5.5266 4.6162 3.8447 13 6 5.4478 6.5803 4.8385 14 6 6.2738 6.3774 6.1107 15 6 5.3398 5.9592 7.2473 16 7 4.6167 4.7479 6.8752 17 6 4.4123 3.7895 7.8316 18 1 4.2849 2.7567 7.5425 19 6 4.3690 4.1452 9.1726 20 7 4.2468 5.4105 9.5142 21 14 4.4840 2.8285 10.4924 22 1 5.7718 2.1015 10.3556 23 1 4.4149 3.4638 11.8330 24 1 3.3576 1.8731 10.3382 25 6 4.1037 4.5123 5.5385 26 1 3.9606 3.4516 5.3323 27 6 2.8636 5.3386 5.1750 28 6 1.5558 4.5477 5.2452 29 6 2.7875 6.6840 5.8995 30 6 2.7198 3.3617 -0.6971 31 8 2.2915 2.1524 -1.0930 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.7628 3.4857 3.2670 38 1 4.6511 7.2981 5.0331 39 1 6.0913 6.9578 4.0438 40 1 6.7739 7.3096 6.3736 41 1 7.0167 5.5976 5.9431 42 1 4.6273 6.7603 7.4438 43 1 5.9261 5.7691 8.1463 44 1 4.2169 5.6592 10.4513 45 1 1.4110 4.1741 6.2588 46 1 0.7233 5.1975 4.9747 47 1 1.6011 3.7082 4.5515 48 1 3.7947 7.0269 6.1360 49 1 2.2961 7.4151 5.2575 50 1 2.2172 6.5686 6.8212 51 1 3.0097 4.1821 -1.3368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087281976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:21 Heat of formation + Delta-G solvation = 40.763695 kcal Electronic energy + Delta-G solvation = -32123.620496 eV Core-core repulsion = 28026.541362 eV Total energy + Delta-G solvation = -4097.079134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.65288 -40.86191 -38.82105 -35.34272 -35.23826 -34.23725 -33.14481 -32.49956 -30.34337 -29.89827 -29.62143 -26.81385 -25.65779 -25.15390 -24.68577 -23.48664 -22.41571 -21.55933 -20.95729 -20.37589 -19.28575 -18.31118 -17.35272 -17.07211 -16.82613 -16.54197 -15.84427 -15.19117 -14.90816 -14.82227 -14.64089 -14.41184 -14.03092 -13.76664 -13.62684 -13.56222 -13.07887 -13.04283 -12.62320 -12.45762 -12.19612 -12.10651 -12.02382 -11.62873 -11.61258 -11.46274 -11.32808 -11.11630 -11.03119 -10.99461 -10.80768 -10.71570 -10.45503 -10.21212 -10.15299 -9.94424 -9.66026 -9.48703 -9.35250 -9.24275 -9.03738 -8.56078 -8.30953 -6.60689 -5.74347 -3.18360 0.92812 1.82579 2.31741 3.14769 3.29310 3.39089 3.44967 3.46216 3.63524 4.48491 4.51379 4.60328 4.71163 4.77583 4.95571 5.01949 5.13594 5.32069 5.33027 5.34642 5.38706 5.42189 5.53153 5.55011 5.65849 5.70888 5.76884 5.85389 5.89002 6.00028 6.06851 6.17954 6.23071 6.29426 6.36447 6.46924 6.51925 6.62088 6.64008 6.66665 6.78806 6.84907 6.87658 7.02480 7.16279 7.21247 7.28390 7.49334 7.71102 7.78101 7.87371 8.26562 8.49290 9.28850 9.94163 10.37838 11.31527 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.003071 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.727594 B = 9114.324334 C =10457.229938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C 0.197 3.803 4 N -0.457 5.457 5 C -0.066 4.066 6 C 0.599 3.401 7 O -0.541 6.541 8 N -0.684 5.684 9 C 0.122 3.878 10 H 0.095 0.905 11 C -0.127 4.127 12 H 0.069 0.931 13 C -0.107 4.107 14 C -0.144 4.144 15 C 0.178 3.822 16 N -0.569 5.569 17 C -0.260 4.260 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.188 3.812 26 H 0.069 0.931 27 C -0.113 4.113 28 C -0.127 4.127 29 C -0.133 4.133 30 C 0.007 3.993 31 O -0.198 6.198 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.409 0.591 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.253 0.747 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.094 0.906 49 H 0.032 0.968 50 H 0.062 0.938 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -5.884 -18.946 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.065 4.065 3 C -0.012 4.012 4 N -0.187 5.187 5 C -0.186 4.186 6 C 0.384 3.616 7 O -0.419 6.419 8 N -0.334 5.334 9 C 0.017 3.983 10 H 0.113 0.887 11 C -0.148 4.148 12 H 0.087 0.913 13 C -0.145 4.145 14 C -0.183 4.183 15 C 0.053 3.947 16 N -0.287 5.287 17 C -0.390 4.390 18 H 0.081 0.919 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.077 3.923 26 H 0.087 0.913 27 C -0.117 4.117 28 C -0.184 4.184 29 C -0.189 4.189 30 C -0.067 4.067 31 O -0.084 6.084 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.247 0.753 38 H 0.097 0.903 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.112 0.888 49 H 0.051 0.949 50 H 0.081 0.919 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.902 -5.276 -18.445 19.801 hybrid contribution -0.045 -0.800 0.164 0.818 sum -4.946 -6.076 -18.281 19.889 Atomic orbital electron populations 1.21797 0.92892 1.03156 1.03108 1.20130 0.97005 0.83880 1.05503 1.26376 0.99557 0.96997 0.78299 1.70787 1.15438 1.02582 1.29899 1.21893 1.09334 0.94267 0.93100 1.16736 0.77697 0.85005 0.82113 1.90808 1.48388 1.27265 1.75460 1.45628 1.65271 1.17749 1.04753 1.22387 0.96430 0.89485 0.89989 0.88655 1.23198 0.95212 0.98207 0.98224 0.91304 1.21568 0.99606 0.95944 0.97370 1.22074 0.99082 1.00022 0.97112 1.20668 0.92334 0.88223 0.93466 1.43225 1.60914 1.19398 1.05136 1.19195 1.44708 0.88515 0.86562 0.91855 1.24976 1.00566 0.95929 0.97670 1.70038 1.53522 1.14983 1.16174 0.86408 0.78070 0.81235 0.81234 1.21164 1.21720 1.21012 1.21250 0.90022 0.95589 0.85401 0.91307 1.23004 0.97532 0.98801 0.92365 1.21586 0.96321 0.98678 1.01838 1.21998 1.04264 0.93504 0.99166 1.25271 0.99110 0.86562 0.95734 1.84381 1.63434 1.22603 1.37958 0.92173 0.90736 0.91508 0.88730 0.87247 0.75276 0.90265 0.93476 0.92872 0.92933 0.94346 0.91116 0.93687 0.91604 0.93934 0.93853 0.88820 0.94877 0.91877 0.75341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 37.16 0.37 -0.46 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.20 2.01 7.56 -13.08 -0.10 1.91 16 4 N -0.46 -5.88 11.06 -7.65 -0.08 -5.97 16 5 C -0.07 -0.89 6.99 -83.02 -0.58 -1.47 16 6 C 0.60 9.51 7.81 -12.52 -0.10 9.41 16 7 O -0.54 -9.76 16.53 5.27 0.09 -9.67 16 8 N -0.68 -10.79 4.74 -53.86 -0.26 -11.05 16 9 C 0.12 2.09 3.30 -66.88 -0.22 1.87 16 10 H 0.10 1.70 7.42 -51.93 -0.39 1.31 16 11 C -0.13 -2.31 4.12 -89.89 -0.37 -2.68 16 12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.89 5.17 -26.69 -0.14 -2.03 16 14 C -0.14 -2.75 6.04 -26.74 -0.16 -2.91 16 15 C 0.18 4.10 3.99 -4.40 -0.02 4.08 16 16 N -0.57 -13.50 2.67 -166.86 -0.45 -13.94 16 17 C -0.26 -6.86 9.48 -15.06 -0.14 -7.00 16 18 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 19 C 0.01 0.19 4.91 -17.43 -0.09 0.11 16 20 N -0.90 -25.10 10.90 55.49 0.61 -24.50 16 21 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.19 3.81 3.39 -68.39 -0.23 3.58 16 26 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 27 C -0.11 -2.06 1.34 -153.85 -0.21 -2.27 16 28 C -0.13 -2.18 8.97 37.16 0.33 -1.85 16 29 C -0.13 -2.52 7.33 37.16 0.27 -2.25 16 30 C 0.01 0.07 11.95 29.96 0.36 0.43 16 31 O -0.20 -2.01 10.73 6.50 0.07 -1.94 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.41 6.23 6.46 -40.82 -0.26 5.97 16 38 H 0.08 1.38 4.65 -51.93 -0.24 1.14 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.94 5.66 -51.93 -0.29 0.65 16 43 H 0.07 1.84 6.47 -51.93 -0.34 1.50 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.04 0.67 5.85 -51.93 -0.30 0.37 16 48 H 0.09 1.85 1.98 -51.93 -0.10 1.75 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 51 H 0.23 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -30.52 392.67 -8.13 -38.65 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.80 Total: 8.02 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.20 Total: -1.88 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.18 Total: -55.45 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.16 Total: -11.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.52 -8.13 -38.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087281976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.417 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds