Wall clock time and date at job start Wed Apr 1 2020 05:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.52993 * 109.47553 * 239.99997 * 2 1 3 5 5 C 1.50700 * 109.46890 * 119.99707 * 2 1 3 6 6 C 1.38628 * 120.32156 * 179.97438 * 5 2 1 7 7 C 1.38591 * 118.48517 * 179.76980 * 6 5 2 8 8 C 1.39303 * 119.05889 * 0.49498 * 7 6 5 9 9 C 1.48175 * 119.72213 * 179.77209 * 8 7 6 10 10 O 1.21518 * 119.99665 * 359.72263 * 9 8 7 11 11 N 1.34774 * 119.99821 * 179.72715 * 9 8 7 12 12 C 1.46502 * 119.99752 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46036 * 35.02344 * 12 11 9 14 14 C 1.53039 * 109.44835 * 275.06173 * 12 11 9 15 15 C 1.53202 * 109.31109 * 301.35180 * 14 12 11 16 16 N 1.46926 * 108.77258 * 305.36386 * 15 14 12 17 17 C 1.36942 * 120.63063 * 233.88219 * 16 15 14 18 18 H 1.07992 * 119.99875 * 152.42889 * 17 16 15 19 19 C 1.38807 * 119.99880 * 332.42519 * 17 16 15 20 20 N 1.31624 * 120.00086 * 159.47314 * 19 17 16 21 21 Si 1.86803 * 120.00386 * 339.47592 * 19 17 16 22 22 H 1.48500 * 109.47214 * 93.00133 * 21 19 17 23 23 H 1.48499 * 109.47277 * 213.00605 * 21 19 17 24 24 H 1.48503 * 109.46657 * 333.00776 * 21 19 17 25 25 C 1.46924 * 118.73914 * 53.61240 * 16 15 14 26 26 C 1.53039 * 109.45933 * 154.99894 * 12 11 9 27 27 H 1.09008 * 109.52101 * 178.60516 * 26 12 11 28 28 O 1.42894 * 109.49845 * 298.68802 * 26 12 11 29 29 N 1.32710 * 120.55560 * 359.49412 * 8 7 6 30 30 C 1.31523 * 121.64153 * 0.25468 * 29 8 7 31 31 H 1.08994 * 109.47513 * 300.00187 * 1 2 3 32 32 H 1.09003 * 109.46782 * 60.00202 * 1 2 3 33 33 H 1.08997 * 109.46626 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47174 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47236 * 299.99520 * 3 2 1 36 36 H 1.08997 * 109.47365 * 60.00117 * 3 2 1 37 37 H 1.09008 * 109.47137 * 300.00258 * 4 2 1 38 38 H 1.09009 * 109.47265 * 59.99668 * 4 2 1 39 39 H 1.08995 * 109.47610 * 179.97438 * 4 2 1 40 40 H 1.08004 * 120.75406 * 0.02689 * 6 5 2 41 41 H 1.08005 * 120.46627 * 180.26258 * 7 6 5 42 42 H 0.97000 * 120.00227 * 359.97438 * 11 9 8 43 43 H 1.08998 * 109.50464 * 61.30156 * 14 12 11 44 44 H 1.08999 * 109.50302 * 181.36879 * 14 12 11 45 45 H 1.08998 * 109.58752 * 185.58162 * 15 14 12 46 46 H 1.08994 * 109.58701 * 65.14953 * 15 14 12 47 47 H 0.96999 * 120.00261 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.59189 * 66.17159 * 25 16 15 49 49 H 1.09000 * 109.59004 * 186.60075 * 25 16 15 50 50 H 0.96693 * 114.00328 * 179.84366 * 28 26 12 51 51 H 1.08002 * 119.54977 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 3.3938 -0.8413 1.4563 7 6 3.8136 -1.4974 2.6026 8 6 2.8581 -2.0087 3.4779 9 6 3.2906 -2.7173 4.7053 10 8 4.4745 -2.8546 4.9423 11 7 2.3709 -3.2094 5.5588 12 6 2.7985 -3.9094 6.7726 13 1 3.7096 -3.4493 7.1553 14 6 3.0689 -5.3795 6.4445 15 6 1.7962 -6.0138 5.8745 16 7 0.6954 -5.8000 6.8239 17 6 -0.0455 -6.8564 7.2826 18 1 -0.5186 -6.8036 8.2520 19 6 -0.1883 -7.9951 6.5017 20 7 -0.5323 -9.1366 7.0593 21 14 0.1078 -7.9074 4.6594 22 1 1.5196 -8.2633 4.3674 23 1 -0.7964 -8.8602 3.9668 24 1 -0.1644 -6.5286 4.1794 25 6 0.4083 -4.4319 7.2762 26 6 1.6966 -3.8153 7.8304 27 1 2.0035 -4.3570 8.7252 28 8 1.4662 -2.4438 8.1585 29 7 1.5637 -1.8618 3.2245 30 6 1.1379 -1.2393 2.1470 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 4.1109 -0.4376 0.7569 41 1 4.8666 -1.6139 2.8124 42 1 1.4259 -3.0994 5.3697 43 1 3.8699 -5.4467 5.7083 44 1 3.3637 -5.9066 7.3519 45 1 1.9531 -7.0830 5.7318 46 1 1.5514 -5.5477 4.9202 47 1 -0.6317 -9.9324 6.5136 48 1 0.0504 -3.8367 6.4361 49 1 -0.3505 -4.4572 8.0583 50 1 0.7768 -2.3087 8.8229 51 1 0.0765 -1.1394 1.9740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090271757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:26 Heat of formation + Delta-G solvation = -31.404472 kcal Electronic energy + Delta-G solvation = -31645.672574 eV Core-core repulsion = 27545.463994 eV Total energy + Delta-G solvation = -4100.208580 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.98702 -39.73662 -38.12001 -37.00733 -35.62509 -34.20919 -32.57122 -31.91390 -31.03520 -30.08360 -29.10611 -27.96443 -27.67373 -25.58097 -24.60442 -23.40984 -22.69640 -22.05878 -21.18585 -19.72940 -18.99842 -18.33766 -17.15740 -16.85837 -16.59402 -15.95827 -15.63659 -15.20689 -15.07528 -15.02024 -14.69117 -14.39021 -14.32164 -14.14561 -13.87283 -13.79247 -13.42217 -13.26036 -12.97718 -12.70893 -12.56994 -12.49009 -12.44226 -12.25648 -12.10061 -11.81740 -11.54841 -11.49792 -11.43187 -11.22735 -11.17643 -11.14973 -10.31395 -10.14928 -10.06519 -10.03022 -9.90823 -9.70589 -9.52180 -9.50592 -9.20222 -8.77431 -8.59599 -7.04627 -6.00270 -3.37852 0.52511 1.05096 2.79434 3.27224 3.30768 3.46500 3.50181 3.79781 4.00786 4.21965 4.28869 4.34087 4.49201 4.55697 4.64333 4.74554 4.81827 4.91901 4.93299 5.15622 5.19263 5.19752 5.26530 5.28387 5.34545 5.44094 5.45976 5.47511 5.55047 5.57940 5.58433 5.68248 5.71896 5.73463 5.80100 5.87146 5.87667 6.01548 6.04384 6.22350 6.33504 6.39647 6.40219 6.50660 6.61537 6.72037 6.84653 7.53506 7.80101 7.85457 7.93280 8.26207 8.38424 8.85932 9.65381 10.00959 11.15212 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.003153 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.320908 B = 8877.803301 C = 9948.775128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.027 4.027 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.106 4.106 6 C -0.081 4.081 7 C -0.110 4.110 8 C 0.080 3.920 9 C 0.569 3.431 10 O -0.543 6.543 11 N -0.686 5.686 12 C 0.162 3.838 13 H 0.086 0.914 14 C -0.146 4.146 15 C 0.126 3.874 16 N -0.600 5.600 17 C -0.264 4.264 18 H 0.087 0.913 19 C 0.027 3.973 20 N -0.906 5.906 21 Si 0.881 3.119 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.120 3.880 26 C 0.076 3.924 27 H 0.072 0.928 28 O -0.569 6.569 29 N -0.451 5.451 30 C 0.097 3.903 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.413 0.587 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.028 0.972 47 H 0.263 0.737 48 H 0.030 0.970 49 H 0.069 0.931 50 H 0.376 0.624 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 20.861 -13.165 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.197 4.197 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.131 4.131 8 C -0.059 4.059 9 C 0.353 3.647 10 O -0.421 6.421 11 N -0.337 5.337 12 C 0.058 3.942 13 H 0.104 0.896 14 C -0.186 4.186 15 C 0.000 4.000 16 N -0.326 5.326 17 C -0.392 4.392 18 H 0.104 0.896 19 C -0.172 4.172 20 N -0.548 5.548 21 Si 0.712 3.288 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.195 1.195 25 C -0.007 4.007 26 C 0.016 3.984 27 H 0.090 0.910 28 O -0.373 6.373 29 N -0.162 5.162 30 C -0.062 4.062 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.156 0.844 41 H 0.165 0.835 42 H 0.250 0.750 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.223 0.777 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.449 20.291 -12.778 24.590 hybrid contribution -0.179 0.115 -1.360 1.376 sum 5.270 20.406 -14.138 25.378 Atomic orbital electron populations 1.22005 0.93622 1.02545 1.02489 1.19497 0.96160 0.95077 0.92006 1.21905 1.01195 0.94277 1.02255 1.21912 1.01211 1.00547 0.96064 1.21064 0.94222 0.98371 0.97159 1.21409 0.95435 0.97151 0.96634 1.22103 1.01655 0.95888 0.93419 1.21248 0.89477 0.98969 0.96180 1.17844 0.85749 0.78670 0.82440 1.90749 1.16575 1.59527 1.75239 1.45849 1.10661 1.55045 1.22124 1.20911 0.97236 0.92772 0.83303 0.89557 1.22423 0.99649 0.94032 1.02469 1.21354 0.86763 0.99750 0.92090 1.44273 1.33948 1.02129 1.52205 1.18883 1.27480 0.92371 1.00456 0.89563 1.25246 0.98606 0.95611 0.97741 1.69828 1.50725 0.99014 1.35249 0.86982 0.76515 0.77549 0.87792 1.21606 1.23084 1.19453 1.21579 0.94439 0.86591 0.98075 1.22694 0.96882 0.81930 0.96936 0.90967 1.86482 1.61212 1.25724 1.63895 1.67630 1.16231 1.12779 1.19547 1.22870 1.00607 0.93730 0.89021 0.91883 0.91867 0.91839 0.92359 0.91946 0.92294 0.92226 0.91935 0.92341 0.84366 0.83462 0.74960 0.91355 0.90255 0.90668 0.95405 0.92668 0.95236 0.91231 0.77733 0.81907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.14 37.16 0.27 -0.64 16 2 C -0.03 -0.18 0.86 -155.66 -0.13 -0.31 16 3 C -0.14 -0.80 8.29 37.16 0.31 -0.50 16 4 C -0.14 -0.87 8.29 37.15 0.31 -0.56 16 5 C -0.11 -0.99 4.77 -104.36 -0.50 -1.49 16 6 C -0.08 -0.77 8.84 -39.31 -0.35 -1.12 16 7 C -0.11 -1.35 9.63 -39.06 -0.38 -1.73 16 8 C 0.08 1.20 6.75 -83.01 -0.56 0.64 16 9 C 0.57 9.92 7.78 -12.18 -0.09 9.82 16 10 O -0.54 -10.44 15.99 5.35 0.09 -10.36 16 11 N -0.69 -11.93 4.14 -54.60 -0.23 -12.16 16 12 C 0.16 2.85 2.47 -67.89 -0.17 2.68 16 13 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 14 C -0.15 -2.74 5.77 -26.61 -0.15 -2.90 16 15 C 0.13 2.78 3.95 -3.71 -0.01 2.77 16 16 N -0.60 -13.85 2.77 -172.32 -0.48 -14.32 16 17 C -0.26 -7.18 10.03 -15.06 -0.15 -7.33 16 18 H 0.09 2.48 8.05 -52.49 -0.42 2.06 16 19 C 0.03 0.78 5.23 -17.43 -0.09 0.69 16 20 N -0.91 -27.45 13.97 55.49 0.78 -26.68 16 21 Si 0.88 22.49 24.35 -169.99 -4.14 18.35 16 22 H -0.29 -7.20 6.63 56.52 0.37 -6.82 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.27 -6.81 6.63 56.52 0.37 -6.43 16 25 C 0.12 2.26 5.84 -3.71 -0.02 2.23 16 26 C 0.08 1.26 3.36 -26.61 -0.09 1.17 16 27 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 28 O -0.57 -8.34 13.21 -35.23 -0.47 -8.80 16 29 N -0.45 -6.51 9.54 -9.80 -0.09 -6.61 16 30 C 0.10 1.10 10.15 -17.57 -0.18 0.92 16 31 H 0.06 0.38 7.53 -51.93 -0.39 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.41 7.53 -51.93 -0.39 0.02 16 34 H 0.06 0.32 7.45 -51.93 -0.39 -0.07 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 38 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 39 H 0.06 0.34 7.45 -51.93 -0.39 -0.05 16 40 H 0.14 0.94 7.24 -52.48 -0.38 0.56 16 41 H 0.15 1.72 7.64 -52.48 -0.40 1.32 16 42 H 0.41 7.21 6.19 -40.82 -0.25 6.96 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.08 1.83 4.49 -51.93 -0.23 1.59 16 46 H 0.03 0.63 6.68 -51.93 -0.35 0.28 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.03 0.56 6.64 -51.93 -0.34 0.21 16 49 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 50 H 0.38 3.90 9.08 45.56 0.41 4.32 16 51 H 0.16 1.49 5.91 -52.49 -0.31 1.18 16 LS Contribution 394.32 15.07 5.94 5.94 Total: -1.00 -33.29 394.32 -7.80 -41.10 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -7.21 Total: 9.19 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -2.00 Total: 4.34 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.02 Total: -59.76 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.38 Total: -19.16 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.29 -7.80 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090271757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.692 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds