Wall clock time and date at job start Wed Apr 1 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.52993 * 109.47553 * 239.99997 * 2 1 3 5 5 C 1.50700 * 109.46890 * 119.99707 * 2 1 3 6 6 C 1.38628 * 120.32156 * 179.97438 * 5 2 1 7 7 C 1.38591 * 118.48517 * 179.76980 * 6 5 2 8 8 C 1.39303 * 119.05889 * 0.49498 * 7 6 5 9 9 C 1.48175 * 119.72213 * 179.77209 * 8 7 6 10 10 O 1.21518 * 119.99665 * 359.72263 * 9 8 7 11 11 N 1.34774 * 119.99821 * 179.72715 * 9 8 7 12 12 C 1.46502 * 119.99752 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46036 * 35.02344 * 12 11 9 14 14 C 1.53039 * 109.44835 * 275.06173 * 12 11 9 15 15 C 1.53202 * 109.31109 * 301.35180 * 14 12 11 16 16 N 1.46926 * 108.77258 * 305.36386 * 15 14 12 17 17 C 1.36942 * 120.63063 * 233.88219 * 16 15 14 18 18 H 1.07992 * 119.99875 * 152.42889 * 17 16 15 19 19 C 1.38807 * 119.99880 * 332.42519 * 17 16 15 20 20 N 1.31624 * 120.00086 * 159.47314 * 19 17 16 21 21 Si 1.86803 * 120.00386 * 339.47592 * 19 17 16 22 22 H 1.48500 * 109.47214 * 93.00133 * 21 19 17 23 23 H 1.48499 * 109.47277 * 213.00605 * 21 19 17 24 24 H 1.48503 * 109.46657 * 333.00776 * 21 19 17 25 25 C 1.46924 * 118.73914 * 53.61240 * 16 15 14 26 26 C 1.53039 * 109.45933 * 154.99894 * 12 11 9 27 27 H 1.09008 * 109.52101 * 178.60516 * 26 12 11 28 28 O 1.42894 * 109.49845 * 298.68802 * 26 12 11 29 29 N 1.32710 * 120.55560 * 359.49412 * 8 7 6 30 30 C 1.31523 * 121.64153 * 0.25468 * 29 8 7 31 31 H 1.08994 * 109.47513 * 300.00187 * 1 2 3 32 32 H 1.09003 * 109.46782 * 60.00202 * 1 2 3 33 33 H 1.08997 * 109.46626 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47174 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47236 * 299.99520 * 3 2 1 36 36 H 1.08997 * 109.47365 * 60.00117 * 3 2 1 37 37 H 1.09008 * 109.47137 * 300.00258 * 4 2 1 38 38 H 1.09009 * 109.47265 * 59.99668 * 4 2 1 39 39 H 1.08995 * 109.47610 * 179.97438 * 4 2 1 40 40 H 1.08004 * 120.75406 * 0.02689 * 6 5 2 41 41 H 1.08005 * 120.46627 * 180.26258 * 7 6 5 42 42 H 0.97000 * 120.00227 * 359.97438 * 11 9 8 43 43 H 1.08998 * 109.50464 * 61.30156 * 14 12 11 44 44 H 1.08999 * 109.50302 * 181.36879 * 14 12 11 45 45 H 1.08998 * 109.58752 * 185.58162 * 15 14 12 46 46 H 1.08994 * 109.58701 * 65.14953 * 15 14 12 47 47 H 0.96999 * 120.00261 * 180.02562 * 20 19 17 48 48 H 1.09000 * 109.59189 * 66.17159 * 25 16 15 49 49 H 1.09000 * 109.59004 * 186.60075 * 25 16 15 50 50 H 0.96693 * 114.00328 * 179.84366 * 28 26 12 51 51 H 1.08002 * 119.54977 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 3.3938 -0.8413 1.4563 7 6 3.8136 -1.4974 2.6026 8 6 2.8581 -2.0087 3.4779 9 6 3.2906 -2.7173 4.7053 10 8 4.4745 -2.8546 4.9423 11 7 2.3709 -3.2094 5.5588 12 6 2.7985 -3.9094 6.7726 13 1 3.7096 -3.4493 7.1553 14 6 3.0689 -5.3795 6.4445 15 6 1.7962 -6.0138 5.8745 16 7 0.6954 -5.8000 6.8239 17 6 -0.0455 -6.8564 7.2826 18 1 -0.5186 -6.8036 8.2520 19 6 -0.1883 -7.9951 6.5017 20 7 -0.5323 -9.1366 7.0593 21 14 0.1078 -7.9074 4.6594 22 1 1.5196 -8.2633 4.3674 23 1 -0.7964 -8.8602 3.9668 24 1 -0.1644 -6.5286 4.1794 25 6 0.4083 -4.4319 7.2762 26 6 1.6966 -3.8153 7.8304 27 1 2.0035 -4.3570 8.7252 28 8 1.4662 -2.4438 8.1585 29 7 1.5637 -1.8618 3.2245 30 6 1.1379 -1.2393 2.1470 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 4.1109 -0.4376 0.7569 41 1 4.8666 -1.6139 2.8124 42 1 1.4259 -3.0994 5.3697 43 1 3.8699 -5.4467 5.7083 44 1 3.3637 -5.9066 7.3519 45 1 1.9531 -7.0830 5.7318 46 1 1.5514 -5.5477 4.9202 47 1 -0.6317 -9.9324 6.5136 48 1 0.0504 -3.8367 6.4361 49 1 -0.3505 -4.4572 8.0583 50 1 0.7768 -2.3087 8.8229 51 1 0.0765 -1.1394 1.9740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090271757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:25 Heat of formation + Delta-G solvation = -55.764053 kcal Electronic energy + Delta-G solvation = -31646.728885 eV Core-core repulsion = 27545.463994 eV Total energy + Delta-G solvation = -4101.264891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.97626 -40.99449 -39.45687 -37.76632 -37.11201 -35.74037 -33.91660 -33.35431 -32.38255 -31.37468 -30.58946 -28.47576 -28.10686 -27.30505 -25.73415 -24.27939 -24.25277 -23.74822 -22.43360 -20.54645 -20.37898 -19.51262 -18.85487 -18.06587 -17.85117 -17.31575 -16.82082 -16.59511 -16.47344 -16.06948 -15.97106 -15.56235 -15.48979 -15.33022 -15.12644 -14.72654 -14.44951 -14.34219 -14.24383 -14.10131 -13.90322 -13.67657 -13.43562 -13.23004 -13.14305 -13.02880 -12.89940 -12.82570 -12.54654 -12.21499 -12.09759 -11.93628 -11.89421 -11.73190 -11.63970 -11.44515 -11.34312 -11.18034 -10.88152 -10.70244 -10.49524 -10.24351 -9.96025 -8.99448 -8.20516 -5.53258 -0.42991 0.19890 1.25870 1.36843 1.45084 1.64364 2.03247 2.36928 2.78825 2.89885 3.05963 3.11083 3.34515 3.52490 3.65459 3.75646 3.83076 3.90675 3.95710 4.05746 4.07147 4.08670 4.19219 4.24455 4.28242 4.45334 4.47866 4.68479 4.69353 4.76768 4.78807 4.79602 4.81546 4.88045 4.90491 4.93152 4.96266 5.02755 5.03833 5.10433 5.15709 5.16345 5.30995 5.41167 5.42958 5.46028 5.57196 5.80762 6.09060 6.35191 6.74660 6.78203 6.90485 7.08030 7.55178 7.95377 8.98730 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.003153 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.320908 B = 8877.803301 C = 9948.775128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.091 4.091 6 C -0.074 4.074 7 C -0.111 4.111 8 C 0.047 3.953 9 C 0.565 3.435 10 O -0.569 6.569 11 N -0.687 5.687 12 C 0.163 3.837 13 H 0.086 0.914 14 C -0.136 4.136 15 C 0.128 3.872 16 N -0.610 5.610 17 C -0.246 4.246 18 H 0.065 0.935 19 C -0.026 4.026 20 N -0.951 5.951 21 Si 0.936 3.064 22 H -0.283 1.283 23 H -0.309 1.309 24 H -0.266 1.266 25 C 0.119 3.881 26 C 0.095 3.905 27 H 0.076 0.924 28 O -0.569 6.569 29 N -0.476 5.476 30 C 0.086 3.914 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.172 0.828 41 H 0.149 0.851 42 H 0.412 0.588 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.052 0.948 46 H 0.025 0.975 47 H 0.262 0.738 48 H 0.036 0.964 49 H 0.076 0.924 50 H 0.397 0.603 51 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 23.670 -15.251 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 C -0.195 4.195 4 C -0.197 4.197 5 C -0.093 4.093 6 C -0.099 4.099 7 C -0.132 4.132 8 C -0.090 4.090 9 C 0.351 3.649 10 O -0.449 6.449 11 N -0.337 5.337 12 C 0.059 3.941 13 H 0.104 0.896 14 C -0.176 4.176 15 C 0.003 3.997 16 N -0.336 5.336 17 C -0.375 4.375 18 H 0.082 0.918 19 C -0.221 4.221 20 N -0.597 5.597 21 Si 0.766 3.234 22 H -0.210 1.210 23 H -0.237 1.237 24 H -0.190 1.190 25 C -0.006 4.006 26 C 0.034 3.966 27 H 0.094 0.906 28 O -0.376 6.376 29 N -0.187 5.187 30 C -0.074 4.074 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.189 0.811 41 H 0.167 0.833 42 H 0.249 0.751 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.070 0.930 46 H 0.043 0.957 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.095 0.905 50 H 0.247 0.753 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 5.912 23.155 -14.856 28.140 hybrid contribution -0.367 -0.606 -0.724 1.013 sum 5.545 22.550 -15.580 27.964 Atomic orbital electron populations 1.22033 0.93139 1.02460 1.03247 1.19579 0.96607 0.95495 0.90819 1.21910 1.01600 0.93279 1.02729 1.21926 1.01626 0.99965 0.96205 1.21416 0.93965 0.96630 0.97291 1.21754 0.96223 0.95976 0.95976 1.22221 1.01325 0.95825 0.93869 1.21004 0.90480 1.01229 0.96304 1.18280 0.85373 0.78243 0.83008 1.90715 1.17457 1.60647 1.76059 1.45840 1.10634 1.55121 1.22132 1.20840 0.97713 0.91693 0.83886 0.89559 1.22288 0.97883 0.94933 1.02470 1.21268 0.87894 0.98551 0.92027 1.44338 1.33971 1.02982 1.52301 1.18878 1.26114 0.93156 0.99354 0.91773 1.25769 0.99782 0.95535 1.01031 1.69933 1.53608 0.99713 1.36412 0.86079 0.76420 0.77296 0.83580 1.20989 1.23744 1.19022 1.21737 0.96039 0.84400 0.98464 1.22326 0.94970 0.82795 0.96535 0.90580 1.86461 1.62261 1.24082 1.64840 1.67527 1.16115 1.13930 1.21115 1.23267 1.01878 0.93542 0.88701 0.91876 0.90445 0.92369 0.91767 0.90458 0.92908 0.93337 0.90410 0.91741 0.81103 0.83311 0.75058 0.91119 0.89871 0.92972 0.95678 0.92872 0.94630 0.90532 0.75302 0.80279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.14 71.98 0.51 -0.92 16 2 C -0.02 -0.25 0.86 -52.93 -0.05 -0.30 16 3 C -0.14 -1.12 8.29 71.98 0.60 -0.52 16 4 C -0.14 -1.28 8.29 71.98 0.60 -0.68 16 5 C -0.09 -1.48 4.77 -19.70 -0.09 -1.58 16 6 C -0.07 -1.23 8.84 22.45 0.20 -1.03 16 7 C -0.11 -2.61 9.63 22.61 0.22 -2.40 16 8 C 0.05 1.39 6.75 41.91 0.28 1.67 16 9 C 0.56 19.61 7.78 86.88 0.68 20.29 16 10 O -0.57 -21.88 15.99 -3.77 -0.06 -21.94 16 11 N -0.69 -23.50 4.14 -444.96 -1.84 -25.34 16 12 C 0.16 5.58 2.47 45.02 0.11 5.69 16 13 H 0.09 3.00 7.58 -2.38 -0.02 2.98 16 14 C -0.14 -5.04 5.77 30.67 0.18 -4.86 16 15 C 0.13 5.59 3.95 86.37 0.34 5.93 16 16 N -0.61 -27.90 2.77 -699.10 -1.93 -29.84 16 17 C -0.25 -13.50 10.03 84.03 0.84 -12.65 16 18 H 0.06 3.76 8.05 -2.91 -0.02 3.74 16 19 C -0.03 -1.49 5.23 84.86 0.44 -1.04 16 20 N -0.95 -59.02 13.97 21.65 0.30 -58.72 16 21 Si 0.94 47.24 24.35 68.60 1.67 48.91 16 22 H -0.28 -13.84 6.63 99.48 0.66 -13.18 16 23 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 24 H -0.27 -13.04 6.63 99.48 0.66 -12.38 16 25 C 0.12 4.34 5.84 86.36 0.50 4.84 16 26 C 0.09 2.98 3.36 30.67 0.10 3.08 16 27 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 28 O -0.57 -15.42 13.21 -148.98 -1.97 -17.39 16 29 N -0.48 -13.39 9.54 -184.92 -1.76 -15.16 16 30 C 0.09 1.81 10.15 84.81 0.86 2.67 16 31 H 0.06 0.60 7.53 -2.39 -0.02 0.58 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.62 7.53 -2.39 -0.02 0.60 16 34 H 0.06 0.46 7.45 -2.39 -0.02 0.44 16 35 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.06 0.52 7.45 -2.39 -0.02 0.50 16 40 H 0.17 1.67 7.24 -2.91 -0.02 1.65 16 41 H 0.15 3.35 7.64 -2.91 -0.02 3.33 16 42 H 0.41 14.13 6.19 -92.71 -0.57 13.55 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 45 H 0.05 2.53 4.49 -2.39 -0.01 2.52 16 46 H 0.03 1.12 6.68 -2.39 -0.02 1.11 16 47 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.04 1.29 6.64 -2.39 -0.02 1.27 16 49 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 50 H 0.40 7.17 9.08 -74.06 -0.67 6.49 16 51 H 0.18 3.00 5.91 -2.91 -0.02 2.99 16 Total: -1.00 -72.68 394.32 0.35 -72.33 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.38 Total: 28.95 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 6.33 Total: 18.20 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -5.24 Total: -129.05 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -2.03 Total: -39.33 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.67 Total: 48.91 kcal Total: -72.68 0.35 -72.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090271757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.566 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds