Wall clock time and date at job start Wed Apr 1 2020 04:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46946 * 2 1 4 4 C 1.50699 * 109.47193 * 179.97438 * 3 2 1 5 5 C 1.38029 * 119.51392 * 125.25467 * 4 3 2 6 6 C 1.39926 * 119.12884 * 180.25041 * 5 4 3 7 7 C 1.48162 * 120.88904 * 179.77697 * 6 5 4 8 8 O 1.21512 * 119.99857 * 359.72388 * 7 6 5 9 9 N 1.34776 * 120.00282 * 179.72355 * 7 6 5 10 10 C 1.46501 * 120.00110 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46940 * 180.02562 * 10 9 7 12 12 H 1.09002 * 110.88909 * 54.29720 * 11 10 9 13 13 C 1.54915 * 111.03575 * 290.39053 * 11 10 9 14 14 N 1.47418 * 104.83107 * 204.90180 * 13 11 10 15 15 C 1.36939 * 125.64960 * 204.07747 * 14 13 11 16 16 H 1.08001 * 119.99891 * 0.04058 * 15 14 13 17 17 C 1.38809 * 120.00452 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99639 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00533 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47193 * 89.99782 * 19 17 15 21 21 H 1.48496 * 109.47198 * 210.00144 * 19 17 15 22 22 H 1.48500 * 109.46476 * 329.99773 * 19 17 15 23 23 C 1.47029 * 108.70495 * 24.13113 * 14 13 11 24 24 C 1.54327 * 107.26790 * 358.93814 * 23 14 13 25 25 H 1.09001 * 110.71543 * 96.16961 * 24 23 14 26 26 C 1.53000 * 110.86771 * 219.37342 * 24 23 14 27 27 C 1.39609 * 118.21876 * 359.50942 * 6 5 4 28 28 C 1.38847 * 118.94956 * 0.24411 * 27 6 5 29 29 O 1.35686 * 119.62354 * 179.97438 * 28 27 6 30 30 N 1.31885 * 119.51602 * 305.00200 * 4 3 2 31 31 H 1.09007 * 109.47157 * 60.00319 * 1 2 3 32 32 H 1.09011 * 109.47275 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47595 * 300.00178 * 1 2 3 34 34 H 1.09000 * 109.47127 * 239.99907 * 2 1 3 35 35 H 1.09000 * 109.46898 * 119.99978 * 2 1 3 36 36 H 1.09000 * 109.47283 * 60.00003 * 3 2 1 37 37 H 1.09000 * 109.47304 * 299.99729 * 3 2 1 38 38 H 1.07999 * 120.43099 * 0.02562 * 5 4 3 39 39 H 0.97001 * 119.99883 * 359.97438 * 9 7 6 40 40 H 1.08998 * 109.47379 * 59.99851 * 10 9 7 41 41 H 1.09002 * 109.47113 * 299.99516 * 10 9 7 42 42 H 1.08995 * 110.36257 * 323.74454 * 13 11 10 43 43 H 1.08997 * 110.36405 * 86.06173 * 13 11 10 44 44 H 0.97001 * 119.99838 * 179.97438 * 18 17 15 45 45 H 1.08993 * 109.88066 * 239.51797 * 23 14 13 46 46 H 1.08996 * 110.00664 * 118.42784 * 23 14 13 47 47 H 1.08997 * 109.46655 * 173.61452 * 26 24 23 48 48 H 1.09001 * 109.47237 * 293.60899 * 26 24 23 49 49 H 1.08994 * 109.47195 * 53.60759 * 26 24 23 50 50 H 1.08003 * 120.52478 * 180.27052 * 27 6 5 51 51 H 0.96701 * 114.00248 * 89.99692 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2273 2.1357 -0.9801 6 6 5.6265 2.1260 -0.9749 7 6 6.3960 2.8526 -2.0117 8 8 5.8123 3.4637 -2.8849 9 7 7.7434 2.8359 -1.9864 10 6 8.5043 3.5548 -3.0113 11 6 10.0019 3.3751 -2.7546 12 1 10.2607 2.3184 -2.6879 13 6 10.4427 4.1363 -1.4794 14 7 11.8793 4.4021 -1.6762 15 6 12.7945 4.6193 -0.6809 16 1 12.4821 4.6032 0.3528 17 6 14.1237 4.8599 -1.0006 18 7 14.5043 4.8797 -2.2604 19 14 15.3722 5.1555 0.3570 20 1 15.9656 3.8599 0.7745 21 1 16.4445 6.0527 -0.1434 22 1 14.6989 5.7890 1.5191 23 6 12.1666 4.3966 -3.1181 24 6 10.8427 4.0858 -3.8478 25 1 10.3558 5.0056 -4.1717 26 6 11.0820 3.1541 -5.0377 27 6 6.2780 1.4180 0.0367 28 6 5.5170 0.7519 0.9881 29 8 6.1360 0.0591 1.9770 30 7 4.1963 0.7844 0.9411 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0278 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.6867 2.6755 -1.7435 39 1 8.2094 2.3484 -1.2892 40 1 8.2534 4.6149 -2.9734 41 1 8.2545 3.1573 -3.9951 42 1 9.8927 5.0728 -1.3875 43 1 10.2890 3.5169 -0.5957 44 1 15.4331 5.0482 -2.4839 45 1 12.9049 3.6279 -3.3460 46 1 12.5402 5.3726 -3.4276 47 1 10.1243 2.8592 -5.4664 48 1 11.6735 3.6728 -5.7921 49 1 11.6187 2.2668 -4.7022 50 1 7.3568 1.3893 0.0789 51 1 6.3157 0.5819 2.7705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093032473.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:00 Heat of formation + Delta-G solvation = -34.517511 kcal Electronic energy + Delta-G solvation = -29986.245388 eV Core-core repulsion = 25885.901817 eV Total energy + Delta-G solvation = -4100.343572 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.16493 -39.60815 -38.08778 -37.62945 -35.26239 -34.85640 -33.20495 -32.68906 -31.01413 -30.77616 -29.37344 -27.31152 -26.19797 -25.52134 -24.35002 -23.25119 -22.74485 -21.83376 -20.62839 -20.07968 -19.46205 -18.86862 -17.48638 -17.30415 -16.81006 -16.05117 -15.96743 -15.71021 -15.41505 -15.19733 -14.81263 -14.73169 -14.30257 -14.04839 -13.85272 -13.71890 -13.33672 -13.07022 -12.95146 -12.68552 -12.57160 -12.40462 -12.09615 -11.89550 -11.81823 -11.73547 -11.52838 -11.45198 -11.26322 -11.04664 -10.85503 -10.81836 -10.54409 -10.21818 -10.17669 -10.04709 -9.97438 -9.87736 -9.70811 -9.58931 -9.19785 -9.12502 -8.64055 -6.87434 -5.75026 -3.08848 0.34292 0.58227 2.57994 2.89827 3.14450 3.36871 3.41933 3.42960 3.43998 4.03154 4.25757 4.45431 4.54193 4.58589 4.69534 4.72016 4.79866 5.00238 5.02358 5.13462 5.18099 5.24387 5.26063 5.38969 5.41313 5.47913 5.49022 5.51552 5.65594 5.69025 5.70164 5.80723 5.86864 5.96138 5.97969 6.01592 6.05957 6.13062 6.21383 6.28398 6.43529 6.49921 6.57798 6.69938 6.87855 7.09883 7.31857 7.50953 7.52666 7.60066 7.80116 7.97248 8.22035 9.18075 9.78362 10.44176 11.36468 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.002089 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.949588 B =13400.315105 C =14750.123461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.070 4.070 4 C 0.151 3.849 5 C -0.125 4.125 6 C -0.064 4.064 7 C 0.555 3.445 8 O -0.530 6.530 9 N -0.713 5.713 10 C 0.132 3.868 11 C -0.115 4.115 12 H 0.081 0.919 13 C 0.142 3.858 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.184 3.816 24 C -0.110 4.110 25 H 0.068 0.932 26 C -0.135 4.135 27 C -0.161 4.161 28 C 0.315 3.685 29 O -0.479 6.479 30 N -0.486 5.486 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.152 0.848 39 H 0.402 0.598 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.019 0.981 43 H 0.035 0.965 44 H 0.252 0.748 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.147 0.853 51 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.177 -8.325 2.789 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.014 3.986 5 C -0.146 4.146 6 C -0.075 4.075 7 C 0.341 3.659 8 O -0.407 6.407 9 N -0.364 5.364 10 C 0.009 3.991 11 C -0.134 4.134 12 H 0.100 0.900 13 C 0.015 3.985 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.059 3.941 24 C -0.130 4.130 25 H 0.086 0.914 26 C -0.192 4.192 27 C -0.183 4.183 28 C 0.136 3.864 29 O -0.286 6.286 30 N -0.206 5.206 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.238 0.762 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.165 0.835 51 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -23.739 -8.731 2.429 25.410 hybrid contribution 1.697 0.682 0.854 2.019 sum -22.042 -8.049 3.284 23.694 Atomic orbital electron populations 1.21783 0.95471 1.01852 1.01863 1.21451 0.95693 0.95390 1.03018 1.20650 0.87530 0.98827 1.03741 1.20996 0.96741 0.91609 0.89288 1.22136 0.93183 0.99637 0.99623 1.20330 0.94408 0.97509 0.95289 1.18074 0.82426 0.80828 0.84594 1.90783 1.69710 1.43317 1.36938 1.46007 1.05607 1.53093 1.31693 1.21495 0.90399 0.96823 0.90418 1.22703 0.91492 1.00759 0.98491 0.90044 1.21575 0.87131 0.95715 0.94062 1.44449 1.02166 1.83996 1.02558 1.19036 0.87976 1.41773 0.87022 0.90510 1.24807 0.97130 1.02026 0.96467 1.69961 1.16076 1.55668 1.15093 0.86122 0.81236 0.77645 0.80771 1.21605 1.21651 1.20731 1.21220 0.90196 1.00589 0.82101 1.22443 0.98689 0.97502 0.94343 0.91373 1.21696 1.00400 0.99465 0.97663 1.22346 1.02005 0.97729 0.96184 1.18934 0.86650 0.90519 0.90315 1.84809 1.76920 1.39311 1.27550 1.66778 1.09948 1.18089 1.25793 0.92658 0.92586 0.92587 0.92077 0.90767 0.89546 0.89706 0.83048 0.76193 0.90969 0.91224 0.96318 0.94718 0.93727 0.93274 0.93987 0.93639 0.92703 0.92681 0.83519 0.73840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.12 -0.82 5.79 -26.74 -0.15 -0.98 16 3 C -0.07 -0.48 5.61 -27.89 -0.16 -0.64 16 4 C 0.15 1.45 6.18 -82.65 -0.51 0.94 16 5 C -0.13 -1.27 9.27 -39.03 -0.36 -1.63 16 6 C -0.06 -0.71 5.91 -104.68 -0.62 -1.33 16 7 C 0.56 7.25 7.80 -12.18 -0.10 7.15 16 8 O -0.53 -8.51 16.44 5.36 0.09 -8.42 16 9 N -0.71 -8.65 5.41 -61.15 -0.33 -8.98 16 10 C 0.13 1.80 5.12 -4.04 -0.02 1.78 16 11 C -0.11 -1.81 2.51 -88.47 -0.22 -2.03 16 12 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 13 C 0.14 2.72 6.56 -2.53 -0.02 2.70 16 14 N -0.61 -14.91 3.39 -170.07 -0.58 -15.48 16 15 C -0.23 -6.25 10.28 -15.06 -0.15 -6.41 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 18 N -0.92 -26.59 10.31 55.49 0.57 -26.02 16 19 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.18 4.28 4.97 -3.06 -0.02 4.27 16 24 C -0.11 -1.92 3.01 -88.78 -0.27 -2.19 16 25 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 26 C -0.13 -2.02 9.17 37.16 0.34 -1.68 16 27 C -0.16 -1.57 9.55 -38.84 -0.37 -1.94 16 28 C 0.31 3.24 7.74 -17.17 -0.13 3.11 16 29 O -0.48 -4.28 13.56 -18.76 -0.25 -4.53 16 30 N -0.49 -5.24 9.87 -9.60 -0.09 -5.33 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 38 H 0.15 1.42 7.63 -52.49 -0.40 1.02 16 39 H 0.40 4.18 6.57 -40.82 -0.27 3.91 16 40 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.07 0.94 8.13 -51.93 -0.42 0.51 16 42 H 0.02 0.37 7.96 -51.93 -0.41 -0.04 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.05 1.27 7.02 -51.93 -0.36 0.91 16 46 H 0.04 1.10 7.50 -51.93 -0.39 0.72 16 47 H 0.04 0.58 8.13 -51.93 -0.42 0.16 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 50 H 0.15 1.18 6.53 -52.48 -0.34 0.84 16 51 H 0.40 1.66 9.06 45.56 0.41 2.08 16 LS Contribution 414.39 15.07 6.24 6.24 Total: -1.00 -33.52 414.39 -9.47 -42.99 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.61 Total: 2.45 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.48 Total: 0.34 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.43 Total: -55.82 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.17 Total: -12.96 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.52 -9.47 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093032473.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.472 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds