Wall clock time and date at job start Wed Apr 1 2020 05:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34254 * 126.52404 * 59.68439 * 4 2 1 6 6 C 1.34055 * 108.22799 * 179.87393 * 5 4 2 7 7 N 1.29935 * 109.23982 * 0.40199 * 6 5 4 8 8 C 1.36068 * 108.47692 * 359.75211 * 7 6 5 9 9 C 1.47418 * 126.44743 * 179.97438 * 8 7 6 10 10 O 1.21609 * 120.00066 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99983 * 0.04177 * 9 8 7 12 12 C 1.46498 * 120.00085 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47580 * 180.02562 * 12 11 9 14 14 C 1.53512 * 111.15999 * 299.12202 * 13 12 11 15 15 C 1.54186 * 106.58558 * 240.87524 * 14 13 12 16 16 C 1.54735 * 104.34628 * 335.42945 * 15 14 13 17 17 C 1.54663 * 111.23156 * 179.97438 * 13 12 11 18 18 H 1.09004 * 112.40018 * 19.49863 * 17 13 12 19 19 N 1.47260 * 106.10622 * 256.41050 * 17 13 12 20 20 C 1.36937 * 126.51898 * 150.11060 * 19 17 13 21 21 H 1.07996 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.38806 * 119.99523 * 179.97438 * 20 19 17 23 23 N 1.31613 * 120.00503 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99636 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47349 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47237 * 120.00297 * 24 22 20 27 27 H 1.48510 * 109.47120 * 240.00015 * 24 22 20 28 28 C 1.47155 * 106.95544 * 330.07354 * 19 17 13 29 29 C 1.53683 * 111.16750 * 62.60312 * 13 12 11 30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 35 35 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 36 36 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 37 37 H 1.07992 * 125.37868 * 180.15537 * 6 5 4 38 38 H 0.96996 * 120.00269 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.47518 * 300.00569 * 12 11 9 40 40 H 1.09004 * 109.46779 * 60.00366 * 12 11 9 41 41 H 1.09005 * 110.04078 * 0.98001 * 14 13 12 42 42 H 1.08996 * 110.04699 * 122.43049 * 14 13 12 43 43 H 1.09008 * 110.79788 * 216.49616 * 15 14 13 44 44 H 1.08996 * 110.11173 * 94.02275 * 15 14 13 45 45 H 1.09008 * 110.65242 * 278.62120 * 16 15 14 46 46 H 1.09002 * 110.65202 * 155.54455 * 16 15 14 47 47 H 0.97001 * 120.00694 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.08730 * 150.06600 * 28 19 17 49 49 H 1.08993 * 110.09858 * 271.59125 * 28 19 17 50 50 H 1.09000 * 110.22677 * 241.06412 * 29 13 12 51 51 H 1.08997 * 110.23069 * 3.02091 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7852 -0.3712 -2.5058 6 6 2.4120 -1.2487 -3.3021 7 7 3.0318 -2.1248 -2.5696 8 6 2.8178 -1.8212 -1.2606 9 6 3.3384 -2.5576 -0.0944 10 8 3.0722 -2.1810 1.0309 11 7 4.1097 -3.6480 -0.2753 12 6 4.6275 -4.3794 0.8837 13 6 5.4670 -5.5654 0.4048 14 6 4.6244 -6.5396 -0.4303 15 6 4.6500 -7.8911 0.3114 16 6 5.9527 -7.8463 1.1452 17 6 6.0356 -6.3675 1.5987 18 1 5.4902 -6.1786 2.5234 19 7 7.4563 -5.9941 1.7022 20 6 8.2093 -5.9620 2.8455 21 1 7.7644 -6.2285 3.7928 22 6 9.5447 -5.5878 2.7867 23 7 10.0871 -5.2635 1.6322 24 14 10.5721 -5.5447 4.3462 25 1 9.7337 -5.9509 5.5027 26 1 11.7162 -6.4818 4.2114 27 1 11.0833 -4.1675 4.5643 28 6 7.9131 -5.6630 0.3431 29 6 6.6908 -5.0920 -0.3952 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 3.1301 1.4425 0.0005 37 1 2.4001 -1.2326 -4.3818 38 1 4.3225 -3.9480 -1.1727 39 1 5.2477 -3.7150 1.4853 40 1 3.7946 -4.7429 1.4856 41 1 3.6035 -6.1683 -0.5201 42 1 5.0658 -6.6624 -1.4193 43 1 4.6778 -8.7203 -0.3958 44 1 3.7815 -7.9768 0.9644 45 1 6.8129 -8.1079 0.5289 46 1 5.8803 -8.5094 2.0073 47 1 11.0202 -5.0016 1.5911 48 1 8.7066 -4.9170 0.3862 49 1 8.2708 -6.5608 -0.1610 50 1 6.6497 -5.4813 -1.4125 51 1 6.7338 -4.0030 -0.4091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094554912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:31 Heat of formation + Delta-G solvation = -2.773399 kcal Electronic energy + Delta-G solvation = -31626.818062 eV Core-core repulsion = 27527.851019 eV Total energy + Delta-G solvation = -4098.967044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.66219 -39.95180 -38.83307 -36.00620 -34.94860 -34.67243 -33.84035 -31.57241 -30.42016 -29.81255 -28.02894 -27.49134 -26.77717 -25.02766 -23.74935 -23.60639 -23.16760 -20.95812 -20.50662 -20.43819 -19.57277 -18.64089 -17.80835 -16.99847 -16.96168 -16.40898 -15.70767 -15.35655 -15.07009 -14.95437 -14.90626 -14.41932 -14.03791 -13.87098 -13.57276 -13.53541 -13.46279 -13.30791 -12.78073 -12.52945 -12.50456 -12.01836 -11.83984 -11.63416 -11.58544 -11.49697 -11.38582 -11.14513 -10.96448 -10.92341 -10.78221 -10.59061 -10.49434 -10.23236 -10.05114 -10.02544 -9.97087 -9.67912 -9.56832 -9.44918 -9.18952 -8.78226 -8.63732 -6.84354 -5.60730 -3.05898 0.94189 1.89316 2.33668 3.22447 3.32076 3.41293 3.47103 3.49288 3.85964 4.26329 4.50001 4.55974 4.76365 4.79669 4.97589 5.02078 5.05972 5.13848 5.26271 5.30110 5.45906 5.48211 5.52100 5.57432 5.59240 5.66787 5.74270 5.79076 5.87619 5.90069 5.95535 5.99238 6.03477 6.11785 6.15000 6.18615 6.22331 6.37474 6.46157 6.49461 6.53809 6.70624 6.75590 6.83839 6.93088 7.11450 7.21530 7.55277 7.66076 7.68283 7.89661 8.26198 8.44937 9.24429 9.85452 10.52459 11.39472 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002759 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.368634 B =10145.154955 C =11029.758818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 C -0.146 4.146 4 C 0.051 3.949 5 O -0.198 6.198 6 C 0.170 3.830 7 N -0.461 5.461 8 C -0.073 4.073 9 C 0.598 3.402 10 O -0.538 6.538 11 N -0.701 5.701 12 C 0.141 3.859 13 C -0.086 4.086 14 C -0.111 4.111 15 C -0.122 4.122 16 C -0.135 4.135 17 C 0.169 3.831 18 H 0.065 0.935 19 N -0.588 5.588 20 C -0.217 4.217 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.137 3.863 29 C -0.129 4.129 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.254 0.746 38 H 0.408 0.592 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.251 0.749 48 H 0.120 0.880 49 H 0.006 0.994 50 H 0.054 0.946 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 8.092 -10.199 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.049 4.049 3 C -0.204 4.204 4 C -0.006 4.006 5 O -0.084 6.084 6 C -0.059 4.059 7 N -0.190 5.190 8 C -0.193 4.193 9 C 0.383 3.617 10 O -0.417 6.417 11 N -0.351 5.351 12 C 0.018 3.982 13 C -0.088 4.088 14 C -0.149 4.149 15 C -0.160 4.160 16 C -0.175 4.175 17 C 0.060 3.940 18 H 0.083 0.917 19 N -0.309 5.309 20 C -0.345 4.345 21 H 0.096 0.904 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.012 3.988 29 C -0.168 4.168 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.270 0.730 38 H 0.244 0.756 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.138 0.862 49 H 0.024 0.976 50 H 0.072 0.928 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.526 7.900 -9.510 22.272 hybrid contribution 0.364 0.235 0.077 0.440 sum -18.161 8.135 -9.433 22.023 Atomic orbital electron populations 1.21849 0.93203 1.02575 1.02643 1.20353 0.96675 0.96484 0.91400 1.21853 1.01825 0.94063 1.02621 1.23800 0.97209 0.95495 0.84060 1.84347 1.58775 1.49090 1.16230 1.27998 0.93355 0.85661 0.98838 1.70752 1.21001 1.25835 1.01387 1.21568 1.06278 0.99327 0.92084 1.16704 0.78624 0.80260 0.86114 1.90732 1.59887 1.67755 1.23317 1.45870 1.50077 1.27694 1.11417 1.21467 0.96923 0.92928 0.86877 1.22015 0.95009 0.93989 0.97811 1.22205 0.98948 0.95130 0.98594 1.22263 0.98598 0.96480 0.98670 1.23036 0.96325 0.99317 0.98871 1.21673 0.87176 0.91081 0.94113 0.91707 1.44580 1.04677 1.77432 1.04180 1.19149 0.91551 1.37984 0.85829 0.90365 1.24764 0.96842 1.02063 0.97071 1.69643 1.12452 1.52514 1.22320 0.86008 0.80194 0.77234 0.82136 1.20520 1.21855 1.21807 1.21845 0.94743 0.99186 0.83062 1.22689 0.96204 1.00156 0.97777 0.92326 0.92177 0.91078 0.84603 0.92328 0.91059 0.92028 0.73038 0.75611 0.90607 0.91664 0.92378 0.91930 0.92576 0.92495 0.91232 0.92666 0.93810 0.86227 0.97633 0.92763 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.61 16 3 C -0.15 -1.26 9.18 37.16 0.34 -0.91 16 4 C 0.05 0.60 5.95 -35.08 -0.21 0.39 16 5 O -0.20 -1.96 10.73 6.51 0.07 -1.89 16 6 C 0.17 1.46 13.19 51.96 0.69 2.14 16 7 N -0.46 -5.59 11.06 -11.49 -0.13 -5.71 16 8 C -0.07 -0.99 6.99 -83.02 -0.58 -1.57 16 9 C 0.60 9.42 7.81 -12.52 -0.10 9.32 16 10 O -0.54 -9.52 14.47 5.27 0.08 -9.44 16 11 N -0.70 -10.62 4.84 -61.38 -0.30 -10.92 16 12 C 0.14 2.35 4.27 -4.04 -0.02 2.34 16 13 C -0.09 -1.48 0.65 -153.01 -0.10 -1.57 16 14 C -0.11 -1.61 5.62 -25.85 -0.15 -1.75 16 15 C -0.12 -1.77 6.83 -25.20 -0.17 -1.95 16 16 C -0.14 -2.45 6.38 -24.82 -0.16 -2.61 16 17 C 0.17 3.39 3.59 -65.64 -0.24 3.16 16 18 H 0.06 1.30 7.95 -51.93 -0.41 0.89 16 19 N -0.59 -14.55 2.98 -161.98 -0.48 -15.04 16 20 C -0.22 -5.93 10.33 -15.06 -0.16 -6.09 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.34 5.49 -17.44 -0.10 -0.44 16 23 N -0.92 -26.65 10.06 55.49 0.56 -26.09 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.14 3.28 5.67 -3.27 -0.02 3.26 16 29 C -0.13 -2.45 5.81 -25.97 -0.15 -2.60 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.14 1.68 5.52 -51.93 -0.29 1.39 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.25 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.41 5.79 7.59 -40.82 -0.31 5.48 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.78 7.47 -51.93 -0.39 0.39 16 42 H 0.06 0.88 7.10 -51.93 -0.37 0.51 16 43 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.40 7.28 -51.92 -0.38 1.02 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.12 3.28 5.45 -51.93 -0.28 3.00 16 49 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 50 H 0.05 0.92 7.11 -51.93 -0.37 0.55 16 51 H 0.05 1.07 7.62 -51.93 -0.40 0.68 16 LS Contribution 399.75 15.07 6.02 6.02 Total: -1.00 -31.68 399.75 -8.48 -40.16 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -8.21 Total: 6.15 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.07 Total: -0.34 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.35 Total: -57.76 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.15 Total: -11.33 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.68 -8.48 -40.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094554912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.383 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds