Wall clock time and date at job start Wed Apr 1 2020 05:15:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53000 * 109.47233 * 2 1
4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3
5 5 O 1.34254 * 126.52404 * 59.68439 * 4 2 1
6 6 C 1.34055 * 108.22799 * 179.87393 * 5 4 2
7 7 N 1.29935 * 109.23982 * 0.40199 * 6 5 4
8 8 C 1.36068 * 108.47692 * 359.75211 * 7 6 5
9 9 C 1.47418 * 126.44743 * 179.97438 * 8 7 6
10 10 O 1.21609 * 120.00066 * 180.02562 * 9 8 7
11 11 N 1.34778 * 119.99983 * 0.04177 * 9 8 7
12 12 C 1.46498 * 120.00085 * 179.97438 * 11 9 8
13 13 C 1.53000 * 109.47580 * 180.02562 * 12 11 9
14 14 C 1.53512 * 111.15999 * 299.12202 * 13 12 11
15 15 C 1.54186 * 106.58558 * 240.87524 * 14 13 12
16 16 C 1.54735 * 104.34628 * 335.42945 * 15 14 13
17 17 C 1.54663 * 111.23156 * 179.97438 * 13 12 11
18 18 H 1.09004 * 112.40018 * 19.49863 * 17 13 12
19 19 N 1.47260 * 106.10622 * 256.41050 * 17 13 12
20 20 C 1.36937 * 126.51898 * 150.11060 * 19 17 13
21 21 H 1.07996 * 120.00114 * 0.02562 * 20 19 17
22 22 C 1.38806 * 119.99523 * 179.97438 * 20 19 17
23 23 N 1.31613 * 120.00503 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 119.99636 * 180.02562 * 22 20 19
25 25 H 1.48501 * 109.47349 * 0.02562 * 24 22 20
26 26 H 1.48508 * 109.47237 * 120.00297 * 24 22 20
27 27 H 1.48510 * 109.47120 * 240.00015 * 24 22 20
28 28 C 1.47155 * 106.95544 * 330.07354 * 19 17 13
29 29 C 1.53683 * 111.16750 * 62.60312 * 13 12 11
30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3
31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3
33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3
34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1
35 35 H 1.09004 * 109.46724 * 60.00652 * 3 2 1
36 36 H 1.09001 * 109.47194 * 179.97438 * 3 2 1
37 37 H 1.07992 * 125.37868 * 180.15537 * 6 5 4
38 38 H 0.96996 * 120.00269 * 0.02562 * 11 9 8
39 39 H 1.09001 * 109.47518 * 300.00569 * 12 11 9
40 40 H 1.09004 * 109.46779 * 60.00366 * 12 11 9
41 41 H 1.09005 * 110.04078 * 0.98001 * 14 13 12
42 42 H 1.08996 * 110.04699 * 122.43049 * 14 13 12
43 43 H 1.09008 * 110.79788 * 216.49616 * 15 14 13
44 44 H 1.08996 * 110.11173 * 94.02275 * 15 14 13
45 45 H 1.09008 * 110.65242 * 278.62120 * 16 15 14
46 46 H 1.09002 * 110.65202 * 155.54455 * 16 15 14
47 47 H 0.97001 * 120.00694 * 179.97438 * 23 22 20
48 48 H 1.09003 * 110.08730 * 150.06600 * 28 19 17
49 49 H 1.08993 * 110.09858 * 271.59125 * 28 19 17
50 50 H 1.09000 * 110.22677 * 241.06412 * 29 13 12
51 51 H 1.08997 * 110.23069 * 3.02091 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0323 -0.7104 -1.2305
5 8 1.7852 -0.3712 -2.5058
6 6 2.4120 -1.2487 -3.3021
7 7 3.0318 -2.1248 -2.5696
8 6 2.8178 -1.8212 -1.2606
9 6 3.3384 -2.5576 -0.0944
10 8 3.0722 -2.1810 1.0309
11 7 4.1097 -3.6480 -0.2753
12 6 4.6275 -4.3794 0.8837
13 6 5.4670 -5.5654 0.4048
14 6 4.6244 -6.5396 -0.4303
15 6 4.6500 -7.8911 0.3114
16 6 5.9527 -7.8463 1.1452
17 6 6.0356 -6.3675 1.5987
18 1 5.4902 -6.1786 2.5234
19 7 7.4563 -5.9941 1.7022
20 6 8.2093 -5.9620 2.8455
21 1 7.7644 -6.2285 3.7928
22 6 9.5447 -5.5878 2.7867
23 7 10.0871 -5.2635 1.6322
24 14 10.5721 -5.5447 4.3462
25 1 9.7337 -5.9509 5.5027
26 1 11.7162 -6.4818 4.2114
27 1 11.0833 -4.1675 4.5643
28 6 7.9131 -5.6630 0.3431
29 6 6.6908 -5.0920 -0.3952
30 1 -0.3633 0.5140 -0.8899
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5139 0.8900
34 1 1.6768 1.9563 -0.8899
35 1 1.6768 1.9562 0.8901
36 1 3.1301 1.4425 0.0005
37 1 2.4001 -1.2326 -4.3818
38 1 4.3225 -3.9480 -1.1727
39 1 5.2477 -3.7150 1.4853
40 1 3.7946 -4.7429 1.4856
41 1 3.6035 -6.1683 -0.5201
42 1 5.0658 -6.6624 -1.4193
43 1 4.6778 -8.7203 -0.3958
44 1 3.7815 -7.9768 0.9644
45 1 6.8129 -8.1079 0.5289
46 1 5.8803 -8.5094 2.0073
47 1 11.0202 -5.0016 1.5911
48 1 8.7066 -4.9170 0.3862
49 1 8.2708 -6.5608 -0.1610
50 1 6.6497 -5.4813 -1.4125
51 1 6.7338 -4.0030 -0.4091
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001094554912.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:15:31
Heat of formation + Delta-G solvation = -2.773399 kcal
Electronic energy + Delta-G solvation = -31626.818062 eV
Core-core repulsion = 27527.851019 eV
Total energy + Delta-G solvation = -4098.967044 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-43.66219 -39.95180 -38.83307 -36.00620 -34.94860 -34.67243 -33.84035 -31.57241
-30.42016 -29.81255 -28.02894 -27.49134 -26.77717 -25.02766 -23.74935 -23.60639
-23.16760 -20.95812 -20.50662 -20.43819 -19.57277 -18.64089 -17.80835 -16.99847
-16.96168 -16.40898 -15.70767 -15.35655 -15.07009 -14.95437 -14.90626 -14.41932
-14.03791 -13.87098 -13.57276 -13.53541 -13.46279 -13.30791 -12.78073 -12.52945
-12.50456 -12.01836 -11.83984 -11.63416 -11.58544 -11.49697 -11.38582 -11.14513
-10.96448 -10.92341 -10.78221 -10.59061 -10.49434 -10.23236 -10.05114 -10.02544
-9.97087 -9.67912 -9.56832 -9.44918 -9.18952 -8.78226 -8.63732 -6.84354
-5.60730 -3.05898 0.94189 1.89316 2.33668 3.22447 3.32076 3.41293
3.47103 3.49288 3.85964 4.26329 4.50001 4.55974 4.76365 4.79669
4.97589 5.02078 5.05972 5.13848 5.26271 5.30110 5.45906 5.48211
5.52100 5.57432 5.59240 5.66787 5.74270 5.79076 5.87619 5.90069
5.95535 5.99238 6.03477 6.11785 6.15000 6.18615 6.22331 6.37474
6.46157 6.49461 6.53809 6.70624 6.75590 6.83839 6.93088 7.11450
7.21530 7.55277 7.66076 7.68283 7.89661 8.26198 8.44937 9.24429
9.85452 10.52459 11.39472
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013240 B = 0.002759 C = 0.002538
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2114.368634 B =10145.154955 C =11029.758818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.031 4.031
3 C -0.146 4.146
4 C 0.051 3.949
5 O -0.198 6.198
6 C 0.170 3.830
7 N -0.461 5.461
8 C -0.073 4.073
9 C 0.598 3.402
10 O -0.538 6.538
11 N -0.701 5.701
12 C 0.141 3.859
13 C -0.086 4.086
14 C -0.111 4.111
15 C -0.122 4.122
16 C -0.135 4.135
17 C 0.169 3.831
18 H 0.065 0.935
19 N -0.588 5.588
20 C -0.217 4.217
21 H 0.079 0.921
22 C -0.012 4.012
23 N -0.920 5.920
24 Si 0.913 3.087
25 H -0.280 1.280
26 H -0.291 1.291
27 H -0.291 1.291
28 C 0.137 3.863
29 C -0.129 4.129
30 H 0.058 0.942
31 H 0.059 0.941
32 H 0.070 0.930
33 H 0.136 0.864
34 H 0.058 0.942
35 H 0.070 0.930
36 H 0.061 0.939
37 H 0.254 0.746
38 H 0.408 0.592
39 H 0.076 0.924
40 H 0.065 0.935
41 H 0.057 0.943
42 H 0.062 0.938
43 H 0.055 0.945
44 H 0.056 0.944
45 H 0.069 0.931
46 H 0.055 0.945
47 H 0.251 0.749
48 H 0.120 0.880
49 H 0.006 0.994
50 H 0.054 0.946
51 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.974 8.092 -10.199 23.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.049 4.049
3 C -0.204 4.204
4 C -0.006 4.006
5 O -0.084 6.084
6 C -0.059 4.059
7 N -0.190 5.190
8 C -0.193 4.193
9 C 0.383 3.617
10 O -0.417 6.417
11 N -0.351 5.351
12 C 0.018 3.982
13 C -0.088 4.088
14 C -0.149 4.149
15 C -0.160 4.160
16 C -0.175 4.175
17 C 0.060 3.940
18 H 0.083 0.917
19 N -0.309 5.309
20 C -0.345 4.345
21 H 0.096 0.904
22 C -0.207 4.207
23 N -0.569 5.569
24 Si 0.744 3.256
25 H -0.205 1.205
26 H -0.219 1.219
27 H -0.218 1.218
28 C 0.012 3.988
29 C -0.168 4.168
30 H 0.077 0.923
31 H 0.078 0.922
32 H 0.089 0.911
33 H 0.154 0.846
34 H 0.077 0.923
35 H 0.089 0.911
36 H 0.080 0.920
37 H 0.270 0.730
38 H 0.244 0.756
39 H 0.094 0.906
40 H 0.083 0.917
41 H 0.076 0.924
42 H 0.081 0.919
43 H 0.074 0.926
44 H 0.075 0.925
45 H 0.088 0.912
46 H 0.073 0.927
47 H 0.062 0.938
48 H 0.138 0.862
49 H 0.024 0.976
50 H 0.072 0.928
51 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -18.526 7.900 -9.510 22.272
hybrid contribution 0.364 0.235 0.077 0.440
sum -18.161 8.135 -9.433 22.023
Atomic orbital electron populations
1.21849 0.93203 1.02575 1.02643 1.20353 0.96675 0.96484 0.91400
1.21853 1.01825 0.94063 1.02621 1.23800 0.97209 0.95495 0.84060
1.84347 1.58775 1.49090 1.16230 1.27998 0.93355 0.85661 0.98838
1.70752 1.21001 1.25835 1.01387 1.21568 1.06278 0.99327 0.92084
1.16704 0.78624 0.80260 0.86114 1.90732 1.59887 1.67755 1.23317
1.45870 1.50077 1.27694 1.11417 1.21467 0.96923 0.92928 0.86877
1.22015 0.95009 0.93989 0.97811 1.22205 0.98948 0.95130 0.98594
1.22263 0.98598 0.96480 0.98670 1.23036 0.96325 0.99317 0.98871
1.21673 0.87176 0.91081 0.94113 0.91707 1.44580 1.04677 1.77432
1.04180 1.19149 0.91551 1.37984 0.85829 0.90365 1.24764 0.96842
1.02063 0.97071 1.69643 1.12452 1.52514 1.22320 0.86008 0.80194
0.77234 0.82136 1.20520 1.21855 1.21807 1.21845 0.94743 0.99186
0.83062 1.22689 0.96204 1.00156 0.97777 0.92326 0.92177 0.91078
0.84603 0.92328 0.91059 0.92028 0.73038 0.75611 0.90607 0.91664
0.92378 0.91930 0.92576 0.92495 0.91232 0.92666 0.93810 0.86227
0.97633 0.92763 0.92647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.18 9.18 37.16 0.34 -0.84 16
2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.61 16
3 C -0.15 -1.26 9.18 37.16 0.34 -0.91 16
4 C 0.05 0.60 5.95 -35.08 -0.21 0.39 16
5 O -0.20 -1.96 10.73 6.51 0.07 -1.89 16
6 C 0.17 1.46 13.19 51.96 0.69 2.14 16
7 N -0.46 -5.59 11.06 -11.49 -0.13 -5.71 16
8 C -0.07 -0.99 6.99 -83.02 -0.58 -1.57 16
9 C 0.60 9.42 7.81 -12.52 -0.10 9.32 16
10 O -0.54 -9.52 14.47 5.27 0.08 -9.44 16
11 N -0.70 -10.62 4.84 -61.38 -0.30 -10.92 16
12 C 0.14 2.35 4.27 -4.04 -0.02 2.34 16
13 C -0.09 -1.48 0.65 -153.01 -0.10 -1.57 16
14 C -0.11 -1.61 5.62 -25.85 -0.15 -1.75 16
15 C -0.12 -1.77 6.83 -25.20 -0.17 -1.95 16
16 C -0.14 -2.45 6.38 -24.82 -0.16 -2.61 16
17 C 0.17 3.39 3.59 -65.64 -0.24 3.16 16
18 H 0.06 1.30 7.95 -51.93 -0.41 0.89 16
19 N -0.59 -14.55 2.98 -161.98 -0.48 -15.04 16
20 C -0.22 -5.93 10.33 -15.06 -0.16 -6.09 16
21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16
22 C -0.01 -0.34 5.49 -17.44 -0.10 -0.44 16
23 N -0.92 -26.65 10.06 55.49 0.56 -26.09 16
24 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16
25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
28 C 0.14 3.28 5.67 -3.27 -0.02 3.26 16
29 C -0.13 -2.45 5.81 -25.97 -0.15 -2.60 16
30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.14 1.68 5.52 -51.93 -0.29 1.39 16
34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
37 H 0.25 0.79 8.06 -52.49 -0.42 0.36 16
38 H 0.41 5.79 7.59 -40.82 -0.31 5.48 16
39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16
40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
41 H 0.06 0.78 7.47 -51.93 -0.39 0.39 16
42 H 0.06 0.88 7.10 -51.93 -0.37 0.51 16
43 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16
44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
45 H 0.07 1.40 7.28 -51.92 -0.38 1.02 16
46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16
48 H 0.12 3.28 5.45 -51.93 -0.28 3.00 16
49 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16
50 H 0.05 0.92 7.11 -51.93 -0.37 0.55 16
51 H 0.05 1.07 7.62 -51.93 -0.40 0.68 16
LS Contribution 399.75 15.07 6.02 6.02
Total: -1.00 -31.68 399.75 -8.48 -40.16
By element:
Atomic # 1 Polarization: 14.36 SS G_CDS: -8.21 Total: 6.15 kcal
Atomic # 6 Polarization: 0.72 SS G_CDS: -1.07 Total: -0.34 kcal
Atomic # 7 Polarization: -57.41 SS G_CDS: -0.35 Total: -57.76 kcal
Atomic # 8 Polarization: -11.47 SS G_CDS: 0.15 Total: -11.33 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -31.68 -8.48 -40.16 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001094554912.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.383 kcal
(2) G-P(sol) polarization free energy of solvation -31.677 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.707 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.773 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds