Wall clock time and date at job start Wed Apr 1 2020 05:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 O 1.34254 * 126.52404 * 59.68439 * 4 2 1 6 6 C 1.34055 * 108.22799 * 179.87393 * 5 4 2 7 7 N 1.29935 * 109.23982 * 0.40199 * 6 5 4 8 8 C 1.36068 * 108.47692 * 359.75211 * 7 6 5 9 9 C 1.47418 * 126.44743 * 179.97438 * 8 7 6 10 10 O 1.21609 * 120.00066 * 180.02562 * 9 8 7 11 11 N 1.34778 * 119.99983 * 0.04177 * 9 8 7 12 12 C 1.46498 * 120.00085 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47580 * 180.02562 * 12 11 9 14 14 C 1.53512 * 111.15999 * 299.12202 * 13 12 11 15 15 C 1.54186 * 106.58558 * 240.87524 * 14 13 12 16 16 C 1.54735 * 104.34628 * 335.42945 * 15 14 13 17 17 C 1.54663 * 111.23156 * 179.97438 * 13 12 11 18 18 H 1.09004 * 112.40018 * 19.49863 * 17 13 12 19 19 N 1.47260 * 106.10622 * 256.41050 * 17 13 12 20 20 C 1.36937 * 126.51898 * 150.11060 * 19 17 13 21 21 H 1.07996 * 120.00114 * 0.02562 * 20 19 17 22 22 C 1.38806 * 119.99523 * 179.97438 * 20 19 17 23 23 N 1.31613 * 120.00503 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99636 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47349 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47237 * 120.00297 * 24 22 20 27 27 H 1.48510 * 109.47120 * 240.00015 * 24 22 20 28 28 C 1.47155 * 106.95544 * 330.07354 * 19 17 13 29 29 C 1.53683 * 111.16750 * 62.60312 * 13 12 11 30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 35 35 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 36 36 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 37 37 H 1.07992 * 125.37868 * 180.15537 * 6 5 4 38 38 H 0.96996 * 120.00269 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.47518 * 300.00569 * 12 11 9 40 40 H 1.09004 * 109.46779 * 60.00366 * 12 11 9 41 41 H 1.09005 * 110.04078 * 0.98001 * 14 13 12 42 42 H 1.08996 * 110.04699 * 122.43049 * 14 13 12 43 43 H 1.09008 * 110.79788 * 216.49616 * 15 14 13 44 44 H 1.08996 * 110.11173 * 94.02275 * 15 14 13 45 45 H 1.09008 * 110.65242 * 278.62120 * 16 15 14 46 46 H 1.09002 * 110.65202 * 155.54455 * 16 15 14 47 47 H 0.97001 * 120.00694 * 179.97438 * 23 22 20 48 48 H 1.09003 * 110.08730 * 150.06600 * 28 19 17 49 49 H 1.08993 * 110.09858 * 271.59125 * 28 19 17 50 50 H 1.09000 * 110.22677 * 241.06412 * 29 13 12 51 51 H 1.08997 * 110.23069 * 3.02091 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7852 -0.3712 -2.5058 6 6 2.4120 -1.2487 -3.3021 7 7 3.0318 -2.1248 -2.5696 8 6 2.8178 -1.8212 -1.2606 9 6 3.3384 -2.5576 -0.0944 10 8 3.0722 -2.1810 1.0309 11 7 4.1097 -3.6480 -0.2753 12 6 4.6275 -4.3794 0.8837 13 6 5.4670 -5.5654 0.4048 14 6 4.6244 -6.5396 -0.4303 15 6 4.6500 -7.8911 0.3114 16 6 5.9527 -7.8463 1.1452 17 6 6.0356 -6.3675 1.5987 18 1 5.4902 -6.1786 2.5234 19 7 7.4563 -5.9941 1.7022 20 6 8.2093 -5.9620 2.8455 21 1 7.7644 -6.2285 3.7928 22 6 9.5447 -5.5878 2.7867 23 7 10.0871 -5.2635 1.6322 24 14 10.5721 -5.5447 4.3462 25 1 9.7337 -5.9509 5.5027 26 1 11.7162 -6.4818 4.2114 27 1 11.0833 -4.1675 4.5643 28 6 7.9131 -5.6630 0.3431 29 6 6.6908 -5.0920 -0.3952 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 1.6768 1.9562 0.8901 36 1 3.1301 1.4425 0.0005 37 1 2.4001 -1.2326 -4.3818 38 1 4.3225 -3.9480 -1.1727 39 1 5.2477 -3.7150 1.4853 40 1 3.7946 -4.7429 1.4856 41 1 3.6035 -6.1683 -0.5201 42 1 5.0658 -6.6624 -1.4193 43 1 4.6778 -8.7203 -0.3958 44 1 3.7815 -7.9768 0.9644 45 1 6.8129 -8.1079 0.5289 46 1 5.8803 -8.5094 2.0073 47 1 11.0202 -5.0016 1.5911 48 1 8.7066 -4.9170 0.3862 49 1 8.2708 -6.5608 -0.1610 50 1 6.6497 -5.4813 -1.4125 51 1 6.7338 -4.0030 -0.4091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094554912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:30 Heat of formation + Delta-G solvation = -24.023079 kcal Electronic energy + Delta-G solvation = -31627.739518 eV Core-core repulsion = 27527.851019 eV Total energy + Delta-G solvation = -4099.888499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.47639 -41.37134 -40.18322 -36.82875 -36.23576 -35.81786 -35.31480 -33.35662 -32.01580 -30.80452 -29.51698 -28.46219 -28.13783 -26.29186 -25.59044 -24.41943 -24.27448 -22.17945 -21.98557 -21.41508 -21.04519 -19.89950 -19.16978 -18.75446 -17.81408 -17.34255 -17.02068 -16.80481 -16.35291 -16.23943 -15.85714 -15.73416 -15.48258 -15.17820 -15.08863 -14.70561 -14.58958 -14.26212 -14.12781 -14.08489 -13.60933 -13.37137 -13.12022 -12.86854 -12.85473 -12.72923 -12.53967 -12.41358 -12.25964 -12.19443 -12.15739 -11.98136 -11.83861 -11.76158 -11.61089 -11.59008 -11.45119 -11.36212 -11.07637 -11.02081 -10.70834 -10.25090 -9.89865 -8.86269 -7.72088 -5.18928 0.03431 1.05987 1.45719 1.46409 1.54197 1.56465 2.08754 2.21306 2.49926 3.09821 3.31962 3.44842 3.52734 3.67180 3.71448 3.77304 3.94736 4.01111 4.05773 4.20833 4.30707 4.37543 4.46978 4.52601 4.53914 4.61080 4.62407 4.63995 4.70939 4.74518 4.85015 4.87815 4.88156 4.93846 5.04722 5.07155 5.11518 5.16620 5.19966 5.22868 5.24741 5.28505 5.38886 5.43887 5.48982 5.50901 5.59108 5.67721 5.88925 6.28793 6.39975 6.59562 7.06560 7.13871 7.81933 8.48831 9.26146 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002759 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.368634 B =10145.154955 C =11029.758818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 C -0.142 4.142 4 C 0.056 3.944 5 O -0.194 6.194 6 C 0.196 3.804 7 N -0.492 5.492 8 C -0.103 4.103 9 C 0.594 3.406 10 O -0.566 6.566 11 N -0.695 5.695 12 C 0.153 3.847 13 C -0.073 4.073 14 C -0.103 4.103 15 C -0.110 4.110 16 C -0.130 4.130 17 C 0.156 3.844 18 H 0.061 0.939 19 N -0.609 5.609 20 C -0.226 4.226 21 H 0.080 0.920 22 C -0.070 4.070 23 N -0.948 5.948 24 Si 0.976 3.024 25 H -0.267 1.267 26 H -0.293 1.293 27 H -0.294 1.294 28 C 0.142 3.858 29 C -0.116 4.116 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.306 0.694 38 H 0.415 0.585 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.054 0.946 47 H 0.245 0.755 48 H 0.083 0.917 49 H -0.015 1.015 50 H 0.080 0.920 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.763 8.363 -11.892 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.054 4.054 3 C -0.199 4.199 4 C -0.002 4.002 5 O -0.080 6.080 6 C -0.033 4.033 7 N -0.221 5.221 8 C -0.221 4.221 9 C 0.380 3.620 10 O -0.447 6.447 11 N -0.345 5.345 12 C 0.030 3.970 13 C -0.075 4.075 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.048 3.952 18 H 0.079 0.921 19 N -0.330 5.330 20 C -0.355 4.355 21 H 0.098 0.902 22 C -0.262 4.262 23 N -0.598 5.598 24 Si 0.805 3.195 25 H -0.192 1.192 26 H -0.220 1.220 27 H -0.222 1.222 28 C 0.016 3.984 29 C -0.154 4.154 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.321 0.679 38 H 0.252 0.748 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.101 0.899 49 H 0.003 0.997 50 H 0.099 0.901 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.350 8.144 -11.214 25.454 hybrid contribution 1.206 0.187 0.559 1.342 sum -20.145 8.331 -10.654 24.264 Atomic orbital electron populations 1.21818 0.91362 1.02447 1.03999 1.20365 0.98158 0.96897 0.89948 1.21834 1.00787 0.93225 1.04044 1.23976 0.96295 0.94802 0.85117 1.84386 1.58837 1.49266 1.15497 1.29202 0.90349 0.83455 1.00271 1.70714 1.22894 1.27635 1.00820 1.21311 1.08110 1.00460 0.92205 1.17058 0.78167 0.80102 0.86628 1.90717 1.60872 1.68406 1.24679 1.45717 1.49983 1.27685 1.11073 1.21180 0.96476 0.92147 0.87245 1.21864 0.94599 0.94368 0.96637 1.22171 0.99399 0.94083 0.98401 1.22220 0.96746 0.97142 0.98696 1.22875 0.97675 0.97348 0.99143 1.21974 0.84833 0.93010 0.95348 0.92087 1.44797 1.06557 1.77915 1.03734 1.19484 0.92127 1.37007 0.86918 0.90214 1.25553 0.98085 1.02666 0.99858 1.69913 1.12176 1.53727 1.24014 0.85034 0.78509 0.76673 0.79302 1.19168 1.22038 1.22153 1.21589 0.96017 0.97295 0.83500 1.22521 0.94791 0.99421 0.98705 0.91078 0.93026 0.89602 0.87193 0.90995 0.89545 0.93609 0.67944 0.74825 0.94137 0.90958 0.90386 0.90699 0.90422 0.90733 0.93674 0.92692 0.94519 0.89938 0.99717 0.90138 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.18 71.98 0.66 -1.36 16 2 C -0.04 -0.69 3.24 -11.54 -0.04 -0.73 16 3 C -0.14 -2.26 9.18 71.98 0.66 -1.60 16 4 C 0.06 1.24 5.95 25.19 0.15 1.39 16 5 O -0.19 -3.29 10.73 0.37 0.00 -3.28 16 6 C 0.20 2.68 13.19 130.52 1.72 4.41 16 7 N -0.49 -10.94 11.06 -305.15 -3.37 -14.31 16 8 C -0.10 -2.72 6.99 40.41 0.28 -2.44 16 9 C 0.59 18.85 7.81 86.66 0.68 19.52 16 10 O -0.57 -20.65 14.47 -4.06 -0.06 -20.71 16 11 N -0.69 -20.80 4.84 -466.37 -2.26 -23.06 16 12 C 0.15 5.14 4.27 86.38 0.37 5.51 16 13 C -0.07 -2.45 0.65 -51.21 -0.03 -2.48 16 14 C -0.10 -2.68 5.62 31.17 0.18 -2.50 16 15 C -0.11 -2.86 6.83 31.59 0.22 -2.65 16 16 C -0.13 -4.63 6.38 31.83 0.20 -4.43 16 17 C 0.16 6.32 3.59 46.06 0.17 6.48 16 18 H 0.06 2.49 7.95 -2.39 -0.02 2.47 16 19 N -0.61 -31.21 2.98 -666.39 -1.99 -33.20 16 20 C -0.23 -12.79 10.33 84.03 0.87 -11.92 16 21 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 22 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 23 N -0.95 -57.38 10.06 21.65 0.22 -57.16 16 24 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 28 C 0.14 7.07 5.67 86.52 0.49 7.56 16 29 C -0.12 -4.40 5.81 31.09 0.18 -4.22 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 2.80 5.52 -2.39 -0.01 2.79 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.31 0.31 8.06 -2.91 -0.02 0.29 16 38 H 0.41 11.26 7.59 -92.71 -0.70 10.56 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.08 1.79 7.47 -2.38 -0.02 1.78 16 42 H 0.07 1.82 7.10 -2.39 -0.02 1.81 16 43 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.04 1.82 7.28 -2.38 -0.02 1.80 16 46 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 48 H 0.08 4.79 5.45 -2.39 -0.01 4.78 16 49 H -0.02 -0.80 7.71 -2.39 -0.02 -0.82 16 50 H 0.08 2.63 7.11 -2.39 -0.02 2.62 16 51 H 0.05 1.87 7.62 -2.39 -0.02 1.85 16 Total: -1.00 -73.48 399.75 2.02 -71.46 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.24 Total: 24.47 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 7.22 Total: 6.98 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -7.40 Total: -127.73 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -73.48 2.02 -71.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094554912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.438 kcal (2) G-P(sol) polarization free energy of solvation -73.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds