Wall clock time and date at job start Wed Apr 1 2020 04:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47457 * 2 1 4 4 C 1.50710 * 109.46585 * 119.99896 * 2 1 3 5 5 C 1.38626 * 120.32168 * 119.97576 * 4 2 1 6 6 C 1.38593 * 118.48523 * 179.76869 * 5 4 2 7 7 C 1.39311 * 119.05871 * 0.49374 * 6 5 4 8 8 C 1.48167 * 119.72441 * 179.77095 * 7 6 5 9 9 O 1.21520 * 119.99918 * 359.72961 * 8 7 6 10 10 N 1.34774 * 120.00269 * 179.72289 * 8 7 6 11 11 C 1.46495 * 120.00102 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47244 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.51275 * 60.00027 * 12 11 10 14 14 C 1.53294 * 109.51271 * 180.10378 * 12 11 10 15 15 N 1.47151 * 108.38209 * 172.27724 * 14 12 11 16 16 C 1.36934 * 120.98407 * 129.44538 * 15 14 12 17 17 H 1.08005 * 119.99855 * 333.75735 * 16 15 14 18 18 C 1.38814 * 120.00512 * 153.75825 * 16 15 14 19 19 N 1.31613 * 120.00430 * 160.00326 * 18 16 15 20 20 Si 1.86801 * 119.99572 * 340.00024 * 18 16 15 21 21 H 1.48500 * 109.46914 * 91.87154 * 20 18 16 22 22 H 1.48493 * 109.47166 * 211.87097 * 20 18 16 23 23 H 1.48495 * 109.47294 * 331.87627 * 20 18 16 24 24 C 1.47152 * 118.03490 * 309.45998 * 15 14 12 25 25 C 1.53299 * 108.38371 * 50.53957 * 24 15 14 26 26 O 1.42962 * 109.21991 * 307.69357 * 25 24 15 27 27 N 1.32720 * 120.55111 * 359.49787 * 7 6 5 28 28 C 1.31524 * 121.64262 * 0.25278 * 27 7 6 29 29 H 1.08998 * 109.47055 * 300.00899 * 1 2 3 30 30 H 1.09000 * 109.46474 * 60.00351 * 1 2 3 31 31 H 1.08993 * 109.47336 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47055 * 239.99101 * 2 1 3 33 33 H 1.09000 * 109.46992 * 299.99332 * 3 2 1 34 34 H 1.08999 * 109.46987 * 59.99617 * 3 2 1 35 35 H 1.09006 * 109.47104 * 179.97438 * 3 2 1 36 36 H 1.07997 * 120.75487 * 0.02562 * 5 4 2 37 37 H 1.08003 * 120.46900 * 180.26613 * 6 5 4 38 38 H 0.97000 * 119.99714 * 0.02562 * 10 8 7 39 39 H 1.08995 * 109.47264 * 60.00236 * 11 10 8 40 40 H 1.09004 * 109.47427 * 300.00523 * 11 10 8 41 41 H 1.08999 * 109.46929 * 180.10507 * 13 12 11 42 42 H 1.09002 * 109.47101 * 300.10633 * 13 12 11 43 43 H 1.09001 * 109.47032 * 60.10416 * 13 12 11 44 44 H 1.09006 * 109.68086 * 291.99680 * 14 12 11 45 45 H 1.09003 * 109.68285 * 52.51342 * 14 12 11 46 46 H 0.96997 * 120.00298 * 179.97438 * 19 18 16 47 47 H 1.09003 * 109.67917 * 170.26136 * 24 15 14 48 48 H 1.08999 * 109.68349 * 290.81718 * 24 15 14 49 49 H 1.08998 * 109.51188 * 67.62009 * 25 24 15 50 50 H 1.08996 * 109.51044 * 187.72379 * 25 24 15 51 51 H 1.07998 * 119.54317 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2306 5 6 2.8292 -1.8385 1.1112 6 6 3.2739 -2.4590 2.2679 7 6 2.8980 -1.9365 3.5035 8 6 3.3608 -2.5912 4.7495 9 8 4.0613 -3.5825 4.6909 10 7 3.0052 -2.0873 5.9478 11 6 3.4633 -2.7343 7.1797 12 6 2.9222 -1.9692 8.3892 13 6 1.3927 -1.9698 8.3519 14 6 3.4032 -2.6440 9.6789 15 7 3.0288 -1.7897 10.8171 16 6 2.3673 -2.3066 11.8989 17 1 1.7499 -3.1854 11.7849 18 6 2.4901 -1.7012 13.1419 19 7 1.5889 -1.9246 14.0747 20 14 3.9347 -0.5693 13.4908 21 1 3.5566 0.8298 13.1673 22 1 4.3018 -0.6635 14.9266 23 1 5.0939 -0.9745 12.6558 24 6 3.3860 -0.3634 10.7582 25 6 2.9059 0.2003 9.4159 26 8 3.4002 -0.6222 8.3562 27 7 2.1332 -0.8541 3.5738 28 6 1.7016 -0.2428 2.4922 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5140 -0.8899 33 1 1.6769 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1302 1.4424 0.0005 36 1 3.1007 -2.2224 0.1391 37 1 3.8999 -3.3373 2.2123 38 1 2.4459 -1.2961 5.9945 39 1 4.5529 -2.7338 7.2068 40 1 3.0996 -3.7615 7.2076 41 1 1.0081 -1.4230 9.2128 42 1 1.0515 -1.4899 7.4346 43 1 1.0289 -2.9969 8.3816 44 1 2.9293 -3.6203 9.7812 45 1 4.4863 -2.7630 9.6491 46 1 1.6750 -1.5018 14.9435 47 1 2.9008 0.1706 11.5753 48 1 4.4675 -0.2522 10.8373 49 1 1.8162 0.2078 9.3930 50 1 3.2797 1.2168 9.2934 51 1 1.0806 0.6354 2.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108212387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:09 Heat of formation + Delta-G solvation = -23.582433 kcal Electronic energy + Delta-G solvation = -30813.104536 eV Core-core repulsion = 26713.235145 eV Total energy + Delta-G solvation = -4099.869391 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.98917 -39.70365 -38.80093 -36.24921 -35.24554 -34.44723 -32.73274 -32.09860 -31.43047 -30.58968 -28.38913 -27.64346 -26.83021 -26.09449 -24.48619 -24.17257 -23.14320 -21.78986 -20.95736 -20.53352 -19.16547 -18.26386 -17.26938 -16.95008 -16.20591 -15.78894 -15.63069 -15.50032 -15.27855 -15.07991 -14.64155 -14.48240 -14.31005 -14.19793 -13.94385 -13.85588 -13.71748 -13.37362 -13.33588 -13.12018 -12.74825 -12.61223 -12.40832 -12.25677 -11.84879 -11.71716 -11.60378 -11.56869 -11.44435 -11.40382 -10.99990 -10.79797 -10.44093 -10.30866 -10.28449 -10.20793 -9.77566 -9.63263 -9.53613 -9.38912 -9.35176 -8.94137 -8.58039 -7.02865 -5.99843 -3.36877 0.36159 0.89677 2.61247 3.07324 3.27322 3.45856 3.49052 3.62850 3.86588 4.05762 4.16162 4.26517 4.47857 4.49808 4.62224 4.65119 4.75149 4.75743 4.86397 5.09999 5.13764 5.15082 5.25545 5.29999 5.30255 5.33518 5.40793 5.41294 5.51138 5.60781 5.68358 5.72931 5.73878 5.80810 5.84553 5.89292 5.91626 6.00964 6.09443 6.23923 6.25258 6.27145 6.45455 6.48469 6.51357 6.59478 6.76041 7.34147 7.64881 7.65217 7.83783 8.17538 8.25610 8.83728 9.64538 10.00709 11.15695 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.002150 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.656695 B =13020.257123 C =13533.677460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.110 4.110 5 C -0.082 4.082 6 C -0.108 4.108 7 C 0.077 3.923 8 C 0.566 3.434 9 O -0.540 6.540 10 N -0.695 5.695 11 C 0.136 3.864 12 C 0.087 3.913 13 C -0.168 4.168 14 C 0.131 3.869 15 N -0.603 5.603 16 C -0.259 4.259 17 H 0.089 0.911 18 C 0.023 3.977 19 N -0.907 5.907 20 Si 0.884 3.116 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.089 3.911 25 C 0.046 3.954 26 O -0.379 6.379 27 N -0.453 5.453 28 C 0.103 3.897 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.415 0.585 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.263 0.737 47 H 0.081 0.919 48 H 0.034 0.966 49 H 0.056 0.944 50 H 0.085 0.915 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 5.086 -29.660 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.204 4.204 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.129 4.129 7 C -0.061 4.061 8 C 0.351 3.649 9 O -0.417 6.417 10 N -0.346 5.346 11 C 0.012 3.988 12 C 0.046 3.954 13 C -0.225 4.225 14 C 0.004 3.996 15 N -0.328 5.328 16 C -0.387 4.387 17 H 0.106 0.894 18 C -0.176 4.176 19 N -0.550 5.550 20 Si 0.715 3.285 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.196 1.196 24 C -0.037 4.037 25 C -0.032 4.032 26 O -0.298 6.298 27 N -0.163 5.163 28 C -0.057 4.057 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.052 0.948 49 H 0.075 0.925 50 H 0.103 0.897 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.617 4.738 -28.733 29.127 hybrid contribution 0.606 0.709 -0.168 0.948 sum -0.011 5.447 -28.901 29.410 Atomic orbital electron populations 1.21884 0.93729 1.02333 1.02467 1.20133 0.96349 0.96239 0.94594 1.21885 1.01411 0.94657 1.02465 1.21134 0.97388 0.96013 0.96689 1.21531 0.95837 0.94433 0.99018 1.22134 0.98639 1.00530 0.91608 1.21199 0.97263 0.93671 0.93937 1.17865 0.80405 0.83638 0.83015 1.90782 1.38210 1.25710 1.87044 1.45787 1.52175 1.31886 1.04736 1.21436 1.00235 0.96000 0.81153 1.22223 0.94022 0.84055 0.95121 1.22265 0.95064 1.02941 1.02264 1.21464 0.97721 0.94458 0.85914 1.44297 1.67684 1.02365 1.18452 1.18893 1.21087 1.13503 0.85216 0.89391 1.25243 0.97930 0.98845 0.95560 1.69816 1.33546 1.45991 1.05616 0.86968 0.85144 0.80088 0.76340 1.21641 1.23091 1.19573 1.22032 0.98282 0.86609 0.96736 1.23085 0.98831 0.93259 0.88019 1.87852 1.71461 1.20875 1.49609 1.67592 1.08477 1.06871 1.33389 1.22611 0.97423 0.98794 0.86863 0.92087 0.91912 0.92375 0.90015 0.91904 0.92089 0.92380 0.84190 0.83363 0.74791 0.90530 0.89761 0.90200 0.93146 0.91787 0.90774 0.94816 0.92686 0.90112 0.94832 0.92534 0.89712 0.82301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.01 37.16 0.33 -0.31 16 2 C -0.05 -0.26 3.11 -91.77 -0.29 -0.54 16 3 C -0.15 -0.65 9.01 37.16 0.33 -0.32 16 4 C -0.11 -0.79 4.80 -104.36 -0.50 -1.29 16 5 C -0.08 -0.62 9.80 -39.31 -0.39 -1.01 16 6 C -0.11 -1.10 9.63 -39.05 -0.38 -1.47 16 7 C 0.08 0.96 6.75 -83.01 -0.56 0.40 16 8 C 0.57 8.32 7.81 -12.18 -0.10 8.23 16 9 O -0.54 -9.18 16.32 5.35 0.09 -9.09 16 10 N -0.69 -9.93 5.14 -61.15 -0.31 -10.24 16 11 C 0.14 2.04 4.82 -4.04 -0.02 2.02 16 12 C 0.09 1.45 0.76 -90.47 -0.07 1.38 16 13 C -0.17 -2.68 7.92 37.16 0.29 -2.38 16 14 C 0.13 2.57 5.40 -3.53 -0.02 2.55 16 15 N -0.60 -14.04 2.35 -171.82 -0.40 -14.44 16 16 C -0.26 -7.05 10.10 -15.06 -0.15 -7.20 16 17 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 18 C 0.02 0.66 5.26 -17.43 -0.09 0.57 16 19 N -0.91 -27.36 13.97 55.49 0.78 -26.58 16 20 Si 0.88 22.21 24.29 -169.99 -4.13 18.09 16 21 H -0.29 -6.93 6.58 56.52 0.37 -6.56 16 22 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 23 H -0.27 -6.78 6.55 56.52 0.37 -6.41 16 24 C 0.09 1.92 4.38 -3.53 -0.02 1.90 16 25 C 0.05 0.82 6.60 37.31 0.25 1.07 16 26 O -0.38 -6.70 9.98 -35.23 -0.35 -7.05 16 27 N -0.45 -5.23 9.54 -9.80 -0.09 -5.33 16 28 C 0.10 0.90 9.90 -17.57 -0.17 0.73 16 29 H 0.06 0.27 7.41 -51.93 -0.38 -0.11 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.32 7.92 -51.93 -0.41 -0.09 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.27 7.41 -51.93 -0.38 -0.11 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.14 0.67 8.00 -52.49 -0.42 0.25 16 37 H 0.15 1.43 7.64 -52.48 -0.40 1.03 16 38 H 0.41 5.75 6.53 -40.82 -0.27 5.49 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.47 6.11 -51.93 -0.32 1.15 16 42 H 0.05 0.71 6.86 -51.93 -0.36 0.36 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.40 7.95 -51.93 -0.41 0.99 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 47 H 0.08 1.87 4.61 -51.93 -0.24 1.63 16 48 H 0.03 0.74 6.87 -51.93 -0.36 0.39 16 49 H 0.06 0.99 6.25 -51.93 -0.32 0.67 16 50 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 51 H 0.16 1.04 7.12 -52.49 -0.37 0.67 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -32.45 397.19 -8.05 -40.50 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.07 Total: 3.85 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.53 Total: 4.31 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.04 Total: -56.59 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.26 Total: -16.14 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.13 Total: 18.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.45 -8.05 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108212387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.917 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds