Wall clock time and date at job start Wed Apr 1 2020 04:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46891 * 2 1 4 4 C 1.50704 * 109.46841 * 119.99677 * 2 1 3 5 5 C 1.38632 * 120.31947 * 120.00142 * 4 2 1 6 6 C 1.38591 * 118.48271 * 179.97438 * 5 4 2 7 7 C 1.39302 * 119.06134 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72051 * 179.97438 * 7 6 5 9 9 O 1.21512 * 120.00168 * 359.97438 * 8 7 6 10 10 N 1.34785 * 120.00091 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00193 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46943 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.55473 * 304.87446 * 12 11 10 14 14 C 1.53290 * 109.50941 * 184.74671 * 12 11 10 15 15 N 1.47170 * 108.41499 * 187.79524 * 14 12 11 16 16 C 1.36935 * 120.99701 * 230.54825 * 15 14 12 17 17 H 1.07992 * 120.00220 * 153.32579 * 16 15 14 18 18 C 1.38816 * 119.99598 * 333.33422 * 16 15 14 19 19 N 1.31616 * 120.00208 * 343.52376 * 18 16 15 20 20 Si 1.86797 * 119.99898 * 163.52863 * 18 16 15 21 21 H 1.48504 * 109.47120 * 89.99889 * 20 18 16 22 22 H 1.48504 * 109.47291 * 209.99333 * 20 18 16 23 23 H 1.48497 * 109.47353 * 329.99349 * 20 18 16 24 24 C 1.47156 * 118.02451 * 50.46879 * 15 14 12 25 25 C 1.53294 * 108.41770 * 309.53478 * 24 15 14 26 26 O 1.42961 * 109.22381 * 52.27835 * 25 24 15 27 27 N 1.32714 * 120.55312 * 0.25290 * 7 6 5 28 28 C 1.31515 * 121.64578 * 359.47635 * 27 7 6 29 29 H 1.09003 * 109.47399 * 300.00051 * 1 2 3 30 30 H 1.09002 * 109.47211 * 60.00526 * 1 2 3 31 31 H 1.09002 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46759 * 239.99616 * 2 1 3 33 33 H 1.08998 * 109.46993 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47386 * 299.99807 * 3 2 1 35 35 H 1.08999 * 109.47614 * 59.99669 * 3 2 1 36 36 H 1.07997 * 120.75425 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.46129 * 180.02562 * 6 5 4 38 38 H 0.96997 * 119.99320 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.46963 * 60.00123 * 11 10 8 40 40 H 1.08999 * 109.47164 * 300.00130 * 11 10 8 41 41 H 1.09004 * 109.46863 * 180.13027 * 13 12 11 42 42 H 1.08999 * 109.47377 * 300.12547 * 13 12 11 43 43 H 1.08996 * 109.46812 * 60.13062 * 13 12 11 44 44 H 1.09000 * 109.68636 * 307.49976 * 14 12 11 45 45 H 1.09007 * 109.68606 * 68.05506 * 14 12 11 46 46 H 0.96998 * 120.00577 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.68193 * 189.78958 * 24 15 14 48 48 H 1.09002 * 109.67597 * 69.27168 * 24 15 14 49 49 H 1.08994 * 109.51442 * 172.20976 * 25 24 15 50 50 H 1.09006 * 109.50925 * 292.30722 * 25 24 15 51 51 H 1.08005 * 119.55308 * 180.26628 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.8297 -1.8381 1.1112 6 6 3.2709 -2.4611 2.2679 7 6 2.8993 -1.9357 3.5033 8 6 3.3623 -2.5904 4.7493 9 8 4.0626 -3.5816 4.6907 10 7 3.0065 -2.0865 5.9477 11 6 3.4638 -2.7341 7.1796 12 6 2.9228 -1.9690 8.3891 13 6 3.3319 -0.4981 8.2893 14 6 3.4962 -2.5738 9.6757 15 7 2.8208 -1.9488 10.8243 16 6 3.5398 -1.4182 11.8619 17 1 3.1218 -0.6185 12.4552 18 6 4.8060 -1.9081 12.1509 19 7 5.1893 -3.0693 11.6642 20 14 5.9659 -0.9194 13.2309 21 1 5.7652 -1.3009 14.6520 22 1 7.3698 -1.2004 12.8366 23 1 5.6850 0.5290 13.0627 24 6 1.3498 -1.9095 10.8238 25 6 0.8810 -1.3372 9.4812 26 8 1.4969 -2.0673 8.4175 27 7 2.1296 -0.8568 3.5737 28 6 1.7013 -0.2431 2.4923 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 3.1009 -2.2223 0.1389 37 1 3.8940 -3.3415 2.2121 38 1 2.4478 -1.2950 5.9944 39 1 4.5535 -2.7344 7.2071 40 1 3.0993 -3.7610 7.2071 41 1 2.9478 0.0452 9.1527 42 1 4.4191 -0.4239 8.2677 43 1 2.9201 -0.0676 7.3765 44 1 3.3187 -3.6492 9.6868 45 1 4.5671 -2.3774 9.7282 46 1 6.0740 -3.4119 11.8664 47 1 0.9993 -1.2733 11.6365 48 1 0.9556 -2.9178 10.9507 49 1 -0.2025 -1.4276 9.4053 50 1 1.1642 -0.2867 9.4145 51 1 1.0799 0.6350 2.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108212388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:12 Heat of formation + Delta-G solvation = -29.042934 kcal Electronic energy + Delta-G solvation = -30920.649680 eV Core-core repulsion = 26820.543504 eV Total energy + Delta-G solvation = -4100.106176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.89808 -39.47836 -38.58184 -36.18474 -34.96583 -34.31068 -32.62428 -31.72540 -31.23502 -30.47332 -27.91494 -27.60247 -26.63988 -25.83327 -24.30212 -24.08994 -23.19731 -21.48753 -20.83833 -20.42076 -18.83440 -18.07932 -17.20858 -16.94059 -15.88203 -15.70869 -15.46724 -15.17482 -15.11273 -14.82493 -14.56124 -14.34083 -14.21285 -14.02541 -13.92002 -13.46943 -13.44709 -13.29811 -13.18549 -12.94723 -12.70752 -12.61560 -12.38801 -11.88389 -11.66999 -11.55327 -11.54182 -11.35061 -11.16249 -10.99559 -10.79967 -10.64057 -10.30457 -10.25993 -10.23227 -10.13530 -9.95647 -9.65707 -9.48631 -9.26743 -9.00413 -8.76328 -8.52265 -6.71505 -5.83205 -3.26668 0.44730 0.97179 2.73142 3.22721 3.34858 3.42109 3.43522 3.72779 3.95800 4.22023 4.29207 4.32635 4.45014 4.56412 4.69667 4.72516 4.82084 4.92514 5.17544 5.17664 5.18491 5.34871 5.35938 5.37406 5.48076 5.50960 5.54607 5.56679 5.66664 5.73057 5.76984 5.77067 5.96313 5.97207 5.98018 6.04236 6.12747 6.17670 6.31634 6.34100 6.50955 6.61047 6.70989 6.79335 6.85944 7.09666 7.44781 7.48825 7.72115 7.78972 7.92701 8.32711 8.35006 9.12251 9.75385 10.32999 11.24861 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.002223 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.948804 B =12590.768516 C =12905.928794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.109 4.109 7 C 0.080 3.920 8 C 0.564 3.436 9 O -0.539 6.539 10 N -0.695 5.695 11 C 0.137 3.863 12 C 0.079 3.921 13 C -0.163 4.163 14 C 0.160 3.840 15 N -0.590 5.590 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.383 6.383 27 N -0.453 5.453 28 C 0.103 3.897 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.412 0.588 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.030 0.970 45 H 0.096 0.904 46 H 0.256 0.744 47 H 0.061 0.939 48 H 0.025 0.975 49 H 0.080 0.920 50 H 0.048 0.952 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 7.417 -24.001 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.204 4.204 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.130 4.130 7 C -0.058 4.058 8 C 0.348 3.652 9 O -0.417 6.417 10 N -0.346 5.346 11 C 0.013 3.987 12 C 0.038 3.962 13 C -0.220 4.220 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.085 0.915 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 N -0.164 5.164 28 C -0.057 4.057 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.250 0.750 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.079 0.921 48 H 0.043 0.957 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.819 6.810 -23.210 25.421 hybrid contribution 0.707 0.596 0.028 0.925 sum -7.112 7.406 -23.182 25.354 Atomic orbital electron populations 1.21885 0.93776 1.02327 1.02408 1.20123 0.96310 0.96211 0.94628 1.21881 1.01412 0.94690 1.02411 1.21120 0.97538 0.96106 0.96655 1.21525 0.95862 0.94429 0.98992 1.22140 0.98713 1.00506 0.91614 1.21250 0.96930 0.93611 0.94047 1.17877 0.80608 0.83703 0.83038 1.90784 1.38306 1.25567 1.87006 1.45900 1.51944 1.31807 1.04926 1.21434 0.99402 0.96986 0.80871 1.22536 0.81924 0.95289 0.96486 1.22209 1.01929 0.96549 1.01328 1.21293 0.98703 0.94500 0.82161 1.43987 0.99006 1.69144 1.19271 1.19137 0.98286 1.12240 1.08601 0.91479 1.25047 0.99749 0.95639 0.99118 1.70006 1.19811 1.16729 1.48017 0.86302 0.80466 0.79809 0.80227 1.21352 1.21475 1.20481 1.21602 0.86683 0.98388 0.95047 1.23030 0.96153 0.95286 0.88702 1.87832 1.19202 1.72625 1.50603 1.67589 1.08397 1.07045 1.33355 1.22601 0.97511 0.98741 0.86887 0.92110 0.91952 0.92380 0.90044 0.92383 0.91952 0.92114 0.84232 0.83349 0.75022 0.89749 0.90573 0.90770 0.91915 0.93728 0.95214 0.88559 0.93437 0.92070 0.95664 0.90216 0.93373 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.01 37.16 0.33 -0.38 16 2 C -0.05 -0.29 3.11 -91.77 -0.29 -0.57 16 3 C -0.15 -0.72 9.01 37.16 0.33 -0.38 16 4 C -0.11 -0.89 4.80 -104.36 -0.50 -1.39 16 5 C -0.08 -0.69 9.80 -39.31 -0.39 -1.07 16 6 C -0.11 -1.22 9.63 -39.06 -0.38 -1.59 16 7 C 0.08 1.08 6.75 -83.01 -0.56 0.52 16 8 C 0.56 9.24 7.81 -12.18 -0.10 9.14 16 9 O -0.54 -10.20 16.32 5.36 0.09 -10.11 16 10 N -0.69 -11.27 5.18 -61.15 -0.32 -11.59 16 11 C 0.14 2.46 4.85 -4.04 -0.02 2.44 16 12 C 0.08 1.52 0.78 -90.47 -0.07 1.45 16 13 C -0.16 -2.91 7.86 37.16 0.29 -2.62 16 14 C 0.16 3.78 4.11 -3.53 -0.01 3.77 16 15 N -0.59 -14.53 2.57 -171.81 -0.44 -14.97 16 16 C -0.25 -6.78 9.65 -15.06 -0.15 -6.92 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.80 11.14 55.49 0.62 -25.18 16 20 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.11 2.27 6.73 -3.53 -0.02 2.25 16 25 C 0.05 0.82 6.60 37.31 0.25 1.07 16 26 O -0.38 -7.37 10.17 -35.23 -0.36 -7.73 16 27 N -0.45 -5.67 9.54 -9.80 -0.09 -5.77 16 28 C 0.10 0.97 9.90 -17.57 -0.17 0.80 16 29 H 0.06 0.30 7.41 -51.93 -0.38 -0.09 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.37 7.92 -51.93 -0.41 -0.05 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.30 7.41 -51.93 -0.38 -0.09 16 36 H 0.14 0.77 8.00 -52.49 -0.42 0.35 16 37 H 0.15 1.60 7.64 -52.49 -0.40 1.20 16 38 H 0.41 6.37 6.33 -40.82 -0.26 6.11 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.07 1.43 6.12 -51.93 -0.32 1.11 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.70 6.59 -51.93 -0.34 0.35 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 2.50 6.16 -51.93 -0.32 2.18 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 47 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.05 0.83 6.26 -51.93 -0.32 0.51 16 51 H 0.16 1.13 7.12 -52.48 -0.37 0.76 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -31.54 403.69 -9.11 -40.65 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.13 Total: 5.74 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.53 Total: 6.52 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.23 Total: -57.50 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.27 Total: -17.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.54 -9.11 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108212388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.606 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds