Wall clock time and date at job start Wed Apr 1 2020 04:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46891 * 2 1 4 4 C 1.50704 * 109.46841 * 119.99677 * 2 1 3 5 5 C 1.38632 * 120.31947 * 120.00142 * 4 2 1 6 6 C 1.38591 * 118.48271 * 179.97438 * 5 4 2 7 7 C 1.39302 * 119.06134 * 0.02562 * 6 5 4 8 8 C 1.48168 * 119.72051 * 179.97438 * 7 6 5 9 9 O 1.21512 * 120.00168 * 359.97438 * 8 7 6 10 10 N 1.34785 * 120.00091 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00193 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46943 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.55473 * 304.87446 * 12 11 10 14 14 C 1.53290 * 109.50941 * 184.74671 * 12 11 10 15 15 N 1.47170 * 108.41499 * 187.79524 * 14 12 11 16 16 C 1.36935 * 120.99701 * 230.54825 * 15 14 12 17 17 H 1.07992 * 120.00220 * 153.32579 * 16 15 14 18 18 C 1.38816 * 119.99598 * 333.33422 * 16 15 14 19 19 N 1.31616 * 120.00208 * 343.52376 * 18 16 15 20 20 Si 1.86797 * 119.99898 * 163.52863 * 18 16 15 21 21 H 1.48504 * 109.47120 * 89.99889 * 20 18 16 22 22 H 1.48504 * 109.47291 * 209.99333 * 20 18 16 23 23 H 1.48497 * 109.47353 * 329.99349 * 20 18 16 24 24 C 1.47156 * 118.02451 * 50.46879 * 15 14 12 25 25 C 1.53294 * 108.41770 * 309.53478 * 24 15 14 26 26 O 1.42961 * 109.22381 * 52.27835 * 25 24 15 27 27 N 1.32714 * 120.55312 * 0.25290 * 7 6 5 28 28 C 1.31515 * 121.64578 * 359.47635 * 27 7 6 29 29 H 1.09003 * 109.47399 * 300.00051 * 1 2 3 30 30 H 1.09002 * 109.47211 * 60.00526 * 1 2 3 31 31 H 1.09002 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46759 * 239.99616 * 2 1 3 33 33 H 1.08998 * 109.46993 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47386 * 299.99807 * 3 2 1 35 35 H 1.08999 * 109.47614 * 59.99669 * 3 2 1 36 36 H 1.07997 * 120.75425 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.46129 * 180.02562 * 6 5 4 38 38 H 0.96997 * 119.99320 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.46963 * 60.00123 * 11 10 8 40 40 H 1.08999 * 109.47164 * 300.00130 * 11 10 8 41 41 H 1.09004 * 109.46863 * 180.13027 * 13 12 11 42 42 H 1.08999 * 109.47377 * 300.12547 * 13 12 11 43 43 H 1.08996 * 109.46812 * 60.13062 * 13 12 11 44 44 H 1.09000 * 109.68636 * 307.49976 * 14 12 11 45 45 H 1.09007 * 109.68606 * 68.05506 * 14 12 11 46 46 H 0.96998 * 120.00577 * 180.02562 * 19 18 16 47 47 H 1.08996 * 109.68193 * 189.78958 * 24 15 14 48 48 H 1.09002 * 109.67597 * 69.27168 * 24 15 14 49 49 H 1.08994 * 109.51442 * 172.20976 * 25 24 15 50 50 H 1.09006 * 109.50925 * 292.30722 * 25 24 15 51 51 H 1.08005 * 119.55308 * 180.26628 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.8297 -1.8381 1.1112 6 6 3.2709 -2.4611 2.2679 7 6 2.8993 -1.9357 3.5033 8 6 3.3623 -2.5904 4.7493 9 8 4.0626 -3.5816 4.6907 10 7 3.0065 -2.0865 5.9477 11 6 3.4638 -2.7341 7.1796 12 6 2.9228 -1.9690 8.3891 13 6 3.3319 -0.4981 8.2893 14 6 3.4962 -2.5738 9.6757 15 7 2.8208 -1.9488 10.8243 16 6 3.5398 -1.4182 11.8619 17 1 3.1218 -0.6185 12.4552 18 6 4.8060 -1.9081 12.1509 19 7 5.1893 -3.0693 11.6642 20 14 5.9659 -0.9194 13.2309 21 1 5.7652 -1.3009 14.6520 22 1 7.3698 -1.2004 12.8366 23 1 5.6850 0.5290 13.0627 24 6 1.3498 -1.9095 10.8238 25 6 0.8810 -1.3372 9.4812 26 8 1.4969 -2.0673 8.4175 27 7 2.1296 -0.8568 3.5737 28 6 1.7013 -0.2431 2.4923 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 3.1009 -2.2223 0.1389 37 1 3.8940 -3.3415 2.2121 38 1 2.4478 -1.2950 5.9944 39 1 4.5535 -2.7344 7.2071 40 1 3.0993 -3.7610 7.2071 41 1 2.9478 0.0452 9.1527 42 1 4.4191 -0.4239 8.2677 43 1 2.9201 -0.0676 7.3765 44 1 3.3187 -3.6492 9.6868 45 1 4.5671 -2.3774 9.7282 46 1 6.0740 -3.4119 11.8664 47 1 0.9993 -1.2733 11.6365 48 1 0.9556 -2.9178 10.9507 49 1 -0.2025 -1.4276 9.4053 50 1 1.1642 -0.2867 9.4145 51 1 1.0799 0.6350 2.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108212388.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:11 Heat of formation + Delta-G solvation = -49.003525 kcal Electronic energy + Delta-G solvation = -30921.515236 eV Core-core repulsion = 26820.543504 eV Total energy + Delta-G solvation = -4100.971732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81735 -40.88153 -39.94388 -36.77118 -36.59119 -35.99693 -33.52065 -33.22238 -33.04142 -31.31351 -29.58900 -28.14887 -27.94245 -27.51090 -25.33637 -24.96439 -24.85014 -22.99741 -21.91566 -21.23976 -20.40089 -19.33052 -18.87549 -18.00549 -17.41091 -16.96509 -16.72638 -16.36411 -16.29258 -16.14169 -15.88111 -15.60114 -15.31097 -15.21623 -14.98170 -14.91605 -14.69066 -14.51533 -14.09615 -14.04310 -13.80668 -13.73988 -13.44435 -13.19299 -12.95890 -12.94066 -12.77946 -12.55281 -12.42593 -12.17559 -12.06911 -12.02493 -11.96574 -11.86750 -11.83087 -11.42311 -11.12086 -10.88274 -10.77230 -10.51859 -10.49709 -10.28203 -9.93248 -8.71243 -7.89474 -5.36518 -0.41467 0.23436 1.45585 1.47604 1.56857 1.64457 1.99201 2.48139 2.76532 2.82140 3.07718 3.25540 3.48971 3.63386 3.71719 3.87922 3.92693 3.95905 3.99489 4.08981 4.11145 4.31214 4.35675 4.40913 4.45165 4.53013 4.57879 4.61172 4.69632 4.75607 4.77857 4.86638 4.88835 4.94420 5.00393 5.04366 5.04663 5.10302 5.18560 5.19830 5.22952 5.29062 5.33122 5.43236 5.51051 5.52472 5.59782 5.61601 6.29506 6.34267 6.37354 6.76816 7.06535 7.07809 7.75972 8.30710 9.16493 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.002223 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.948804 B =12590.768516 C =12905.928794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.147 4.147 4 C -0.096 4.096 5 C -0.077 4.077 6 C -0.113 4.113 7 C 0.049 3.951 8 C 0.562 3.438 9 O -0.574 6.574 10 N -0.689 5.689 11 C 0.146 3.854 12 C 0.094 3.906 13 C -0.152 4.152 14 C 0.169 3.831 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.074 0.926 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.103 3.897 25 C 0.052 3.948 26 O -0.387 6.387 27 N -0.471 5.471 28 C 0.096 3.904 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.173 0.827 37 H 0.145 0.855 38 H 0.418 0.582 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.071 0.929 44 H -0.005 1.005 45 H 0.068 0.932 46 H 0.250 0.750 47 H 0.073 0.927 48 H 0.013 0.987 49 H 0.117 0.883 50 H 0.060 0.940 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 9.988 -26.489 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C -0.204 4.204 4 C -0.098 4.098 5 C -0.103 4.103 6 C -0.134 4.134 7 C -0.087 4.087 8 C 0.348 3.652 9 O -0.454 6.454 10 N -0.340 5.340 11 C 0.021 3.979 12 C 0.053 3.947 13 C -0.210 4.210 14 C 0.042 3.958 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.192 1.192 24 C -0.023 4.023 25 C -0.025 4.025 26 O -0.307 6.307 27 N -0.183 5.183 28 C -0.064 4.064 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.191 0.809 37 H 0.163 0.837 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.013 0.987 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.031 0.969 49 H 0.135 0.865 50 H 0.078 0.922 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -9.448 9.409 -25.703 28.955 hybrid contribution 1.081 -0.184 0.723 1.314 sum -8.366 9.224 -24.979 27.912 Atomic orbital electron populations 1.21894 0.93193 1.02178 1.03140 1.20201 0.96637 0.96356 0.93680 1.21889 1.01052 0.94320 1.03141 1.21482 0.95761 0.95336 0.97228 1.21892 0.94989 0.94062 0.99330 1.22231 0.98768 1.00623 0.91824 1.20843 0.99528 0.95208 0.93128 1.18384 0.79738 0.83230 0.83851 1.90750 1.39886 1.27161 1.87610 1.45745 1.52085 1.31844 1.04335 1.21142 0.98849 0.96238 0.81638 1.22187 0.82021 0.96046 0.94450 1.22095 1.01653 0.95052 1.02158 1.21043 0.97476 0.92834 0.84440 1.44237 1.00685 1.68957 1.19191 1.19492 0.98619 1.12040 1.08712 0.90853 1.25814 1.01336 0.96524 1.00915 1.70175 1.19805 1.18399 1.49836 0.85286 0.77960 0.78937 0.78329 1.21241 1.22091 1.19166 1.21811 0.84481 0.98282 0.97687 1.23117 0.97945 0.95308 0.86165 1.87842 1.18696 1.73146 1.50986 1.67492 1.08758 1.07010 1.34997 1.23067 0.97395 0.99115 0.86856 0.92162 0.90549 0.92971 0.88477 0.92968 0.90560 0.92158 0.80921 0.83697 0.74364 0.90521 0.92117 0.91732 0.92484 0.91024 0.98726 0.91343 0.94042 0.90826 0.96897 0.86549 0.92207 0.80093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.01 71.98 0.65 -0.29 16 2 C -0.05 -0.35 3.11 -11.54 -0.04 -0.39 16 3 C -0.15 -0.94 9.01 71.98 0.65 -0.29 16 4 C -0.10 -1.24 4.80 -19.69 -0.09 -1.33 16 5 C -0.08 -1.10 9.80 22.45 0.22 -0.88 16 6 C -0.11 -2.45 9.63 22.61 0.22 -2.23 16 7 C 0.05 1.33 6.75 41.91 0.28 1.62 16 8 C 0.56 18.92 7.81 86.88 0.68 19.60 16 9 O -0.57 -22.71 16.32 -3.75 -0.06 -22.78 16 10 N -0.69 -22.69 5.18 -465.66 -2.41 -25.10 16 11 C 0.15 5.48 4.85 86.38 0.42 5.90 16 12 C 0.09 3.68 0.78 -10.70 -0.01 3.67 16 13 C -0.15 -5.35 7.86 71.98 0.57 -4.78 16 14 C 0.17 8.34 4.11 86.35 0.35 8.69 16 15 N -0.61 -30.37 2.57 -697.49 -1.79 -32.16 16 16 C -0.26 -13.98 9.65 84.03 0.81 -13.17 16 17 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 18 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 19 N -0.94 -55.71 11.14 21.65 0.24 -55.46 16 20 Si 0.97 44.60 29.58 68.60 2.03 46.63 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.10 4.24 6.73 86.35 0.58 4.82 16 25 C 0.05 1.75 6.60 72.08 0.48 2.22 16 26 O -0.39 -14.61 10.17 -148.98 -1.52 -16.12 16 27 N -0.47 -11.26 9.54 -184.92 -1.76 -13.02 16 28 C 0.10 1.60 9.90 84.82 0.84 2.44 16 29 H 0.06 0.40 7.41 -2.39 -0.02 0.38 16 30 H 0.08 0.30 8.14 -2.39 -0.02 0.29 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.10 0.45 7.92 -2.39 -0.02 0.43 16 33 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.06 0.40 7.41 -2.39 -0.02 0.38 16 36 H 0.17 1.25 8.00 -2.91 -0.02 1.22 16 37 H 0.15 3.14 7.64 -2.91 -0.02 3.12 16 38 H 0.42 12.67 6.33 -92.71 -0.59 12.08 16 39 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.06 2.41 6.12 -2.39 -0.01 2.39 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.07 2.12 6.59 -2.39 -0.02 2.10 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.07 3.75 6.16 -2.38 -0.01 3.74 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 48 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 50 H 0.06 1.91 6.26 -2.38 -0.01 1.90 16 51 H 0.18 2.05 7.12 -2.91 -0.02 2.03 16 Total: -1.00 -71.00 403.69 2.10 -68.91 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.35 Total: 25.87 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.02 Total: 23.23 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -5.73 Total: -125.75 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -1.58 Total: -38.90 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.00 2.10 -68.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108212388.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.904 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds