Wall clock time and date at job start Wed Apr 1 2020 04:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99725 * 2 1 4 4 C 1.52995 * 109.47262 * 124.99989 * 3 2 1 5 5 C 1.50705 * 112.84752 * 299.44732 * 4 3 2 6 6 O 1.21279 * 120.00077 * 109.85299 * 5 4 3 7 7 N 1.34779 * 120.00093 * 289.84773 * 5 4 3 8 8 C 1.46500 * 120.00103 * 185.13376 * 7 5 4 9 9 H 1.09000 * 110.85759 * 328.79282 * 8 7 5 10 10 C 1.54627 * 110.99884 * 92.60514 * 8 7 5 11 11 C 1.51296 * 104.25535 * 142.71336 * 10 8 7 12 12 O 1.21274 * 124.94106 * 164.00557 * 11 10 8 13 13 N 1.34416 * 110.10758 * 344.14597 * 11 10 8 14 14 C 1.46504 * 124.34231 * 179.43756 * 13 11 10 15 15 C 1.53492 * 114.20933 * 59.69896 * 14 13 11 16 16 N 1.47062 * 87.98767 * 220.34169 * 15 14 13 17 17 C 1.36939 * 136.05838 * 207.08424 * 16 15 14 18 18 H 1.07991 * 120.00120 * 357.32746 * 17 16 15 19 19 C 1.38812 * 119.99831 * 177.33013 * 17 16 15 20 20 N 1.31619 * 120.00194 * 8.11259 * 19 17 16 21 21 Si 1.86799 * 120.00206 * 188.10920 * 19 17 16 22 22 H 1.48502 * 109.46913 * 94.96587 * 21 19 17 23 23 H 1.48496 * 109.47360 * 214.96829 * 21 19 17 24 24 H 1.48502 * 109.46761 * 334.97008 * 21 19 17 25 25 C 1.47062 * 87.88397 * 27.11969 * 16 15 14 26 26 C 1.46764 * 111.30758 * 359.16834 * 13 11 10 27 27 C 1.53778 * 113.69349 * 70.71736 * 4 3 2 28 28 C 1.53776 * 87.08102 * 89.12844 * 27 4 3 29 29 C 1.53780 * 87.08304 * 25.43473 * 28 27 4 30 30 H 1.07996 * 120.00407 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99837 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00407 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.47152 * 4.99725 * 3 2 1 34 34 H 1.09002 * 109.47202 * 245.00172 * 3 2 1 35 35 H 0.96998 * 119.99800 * 5.13581 * 7 5 4 36 36 H 1.09000 * 110.48924 * 261.60596 * 10 8 7 37 37 H 1.08999 * 110.48645 * 24.25209 * 10 8 7 38 38 H 1.09002 * 113.41015 * 192.89639 * 14 13 11 39 39 H 1.09004 * 113.46847 * 105.56246 * 15 14 13 40 40 H 1.09004 * 113.47056 * 335.12886 * 15 14 13 41 41 H 0.97003 * 120.00544 * 179.97438 * 20 19 17 42 42 H 1.09003 * 113.47106 * 87.65826 * 25 16 15 43 43 H 1.09000 * 113.46923 * 218.09917 * 25 16 15 44 44 H 1.08998 * 110.24631 * 136.28212 * 26 13 11 45 45 H 1.08997 * 110.24664 * 258.19744 * 26 13 11 46 46 H 1.09004 * 113.61506 * 203.68318 * 27 4 3 47 47 H 1.09001 * 113.61037 * 334.57430 * 27 4 3 48 48 H 1.09000 * 113.61095 * 270.88196 * 28 27 4 49 49 H 1.08999 * 113.61209 * 139.98856 * 28 27 4 50 50 H 1.08999 * 113.60995 * 220.01650 * 29 28 27 51 51 H 1.09000 * 113.68646 * 89.12702 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0349 1.3332 1.1816 5 6 2.3398 1.2165 2.5136 6 8 2.4566 0.2047 3.1720 7 7 1.5882 2.2365 2.9732 8 6 1.0047 2.1697 4.3153 9 1 0.7787 1.1392 4.5894 10 6 1.9372 2.8279 5.3584 11 6 0.9937 3.5203 6.3173 12 8 1.2957 3.9199 7.4218 13 7 -0.2285 3.6253 5.7680 14 6 -1.3837 4.2343 6.4322 15 6 -1.1820 5.7049 6.8229 16 7 -1.8806 5.4119 8.0834 17 6 -2.6294 6.1217 8.9838 18 1 -2.7791 7.1821 8.8446 19 6 -3.1960 5.4781 10.0754 20 7 -2.8858 4.2256 10.3349 21 14 -4.3988 6.3897 11.1762 22 1 -5.7877 6.1041 10.7351 23 1 -4.2231 5.9401 12.5805 24 1 -4.1417 7.8496 11.0880 25 6 -1.4204 4.0213 7.9518 26 6 -0.2557 3.0574 4.4149 27 6 4.2281 0.3761 1.0234 28 6 4.9620 1.5323 0.3241 29 6 4.0514 2.4853 1.1162 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9352 0.0004 33 1 1.3584 2.1317 0.0895 34 1 2.6212 1.4027 -0.9314 35 1 1.4337 3.0148 2.4154 36 1 2.5245 2.0702 5.8772 37 1 2.5910 3.5568 4.8795 38 1 -2.3292 4.0310 5.9294 39 1 -1.7198 6.4023 6.1806 40 1 -0.1357 5.9782 6.9597 41 1 -3.2815 3.7760 11.0980 42 1 -0.4376 3.8460 8.3894 43 1 -2.1608 3.2871 8.2695 44 1 -1.1533 2.4548 4.2767 45 1 -0.2180 3.8531 3.6710 46 1 4.6799 0.0813 1.9706 47 1 4.0242 -0.4713 0.3688 48 1 4.7977 1.5658 -0.7529 49 1 6.0150 1.6085 0.5951 50 1 3.7051 3.3408 0.5363 51 1 4.4540 2.7682 2.0888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108569477.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:18 Heat of formation + Delta-G solvation = 41.924687 kcal Electronic energy + Delta-G solvation = -30979.804695 eV Core-core repulsion = 26882.775906 eV Total energy + Delta-G solvation = -4097.028789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.22527 -40.36955 -38.32695 -37.33464 -36.34345 -34.72087 -34.10728 -32.20804 -30.52215 -28.82040 -27.59860 -27.13416 -26.11005 -25.18529 -24.52988 -23.49189 -22.14969 -21.13945 -20.51562 -20.36395 -19.03511 -18.40675 -17.64075 -16.96196 -16.74645 -16.18327 -16.00275 -15.47751 -15.29138 -14.99545 -14.74829 -14.62986 -14.32817 -14.19512 -13.81080 -13.58485 -13.51889 -13.32649 -13.11599 -12.81436 -12.47435 -12.40836 -12.32483 -12.03446 -11.87507 -11.60668 -11.52650 -11.51681 -11.48438 -11.17731 -10.97065 -10.89856 -10.75695 -10.69394 -10.11170 -10.05474 -9.93611 -9.70817 -9.56336 -9.40733 -9.10339 -8.63019 -8.15565 -6.82896 -5.73220 -3.04248 1.92230 2.36143 2.71856 2.91049 3.28849 3.42468 3.46719 3.49418 3.87132 4.02614 4.19731 4.31794 4.33647 4.44766 4.51063 4.56538 4.71384 4.78842 4.84967 4.88509 5.01066 5.10844 5.24681 5.26264 5.33741 5.36519 5.38061 5.43904 5.47066 5.52027 5.54397 5.58643 5.64563 5.69747 5.71487 5.74854 5.83522 5.94365 6.17605 6.27372 6.30482 6.39031 6.46543 6.57455 6.87816 7.18212 7.27644 7.48432 7.57585 7.66358 7.95348 8.00271 8.54226 9.06969 9.73632 10.67740 11.44785 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.002066 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.383414 B =13550.816814 C =13962.093913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.064 4.064 4 C -0.102 4.102 5 C 0.536 3.464 6 O -0.531 6.531 7 N -0.719 5.719 8 C 0.133 3.867 9 H 0.114 0.886 10 C -0.167 4.167 11 C 0.515 3.485 12 O -0.508 6.508 13 N -0.602 5.602 14 C 0.092 3.908 15 C 0.112 3.888 16 N -0.604 5.604 17 C -0.217 4.217 18 H 0.082 0.918 19 C -0.007 4.007 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.141 3.859 26 C 0.100 3.900 27 C -0.111 4.111 28 C -0.142 4.142 29 C -0.127 4.127 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.401 0.599 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.254 0.746 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.637 -7.224 -28.017 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.101 4.101 4 C -0.105 4.105 5 C 0.322 3.678 6 O -0.406 6.406 7 N -0.370 5.370 8 C 0.028 3.972 9 H 0.132 0.868 10 C -0.209 4.209 11 C 0.301 3.699 12 O -0.382 6.382 13 N -0.337 5.337 14 C -0.011 4.011 15 C -0.016 4.016 16 N -0.329 5.329 17 C -0.345 4.345 18 H 0.100 0.900 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.015 3.985 26 C -0.025 4.025 27 C -0.149 4.149 28 C -0.179 4.179 29 C -0.165 4.165 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.236 0.764 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.607 -7.647 -26.557 30.376 hybrid contribution -0.741 0.829 0.379 1.174 sum 11.867 -6.818 -26.178 29.540 Atomic orbital electron populations 1.23865 0.95864 1.02035 1.00465 1.22841 0.96000 0.98287 1.00384 1.20507 0.96964 0.96242 0.96416 1.22154 0.95003 1.00520 0.92855 1.20355 0.77906 0.82496 0.87075 1.90715 1.61379 1.29364 1.59119 1.45904 1.52673 1.21823 1.16649 1.21805 0.92091 1.01344 0.82005 0.86821 1.22832 0.98836 1.01631 0.97560 1.20605 0.83013 0.79353 0.86880 1.90772 1.78484 1.49437 1.19511 1.48347 1.10882 1.59349 1.15136 1.23778 0.86345 0.95105 0.95859 1.22747 0.96246 0.93594 0.89011 1.45327 1.56910 1.07391 1.23321 1.18906 1.21683 0.91827 1.02038 0.90003 1.24833 1.00768 0.96551 0.98288 1.69876 1.45574 1.10939 1.29817 0.86069 0.81071 0.78653 0.79787 1.21530 1.21706 1.20573 1.22657 0.99619 0.89159 0.87040 1.22192 0.98224 0.96562 0.85498 1.22841 0.93856 0.96496 1.01716 1.22842 0.99260 0.96201 0.99606 1.22998 0.95797 0.96087 1.01591 0.88541 0.88408 0.87165 0.90725 0.89621 0.76380 0.87871 0.87951 0.87250 0.94353 0.94466 0.93615 0.92008 0.91645 0.89668 0.91042 0.89089 0.90755 0.89800 0.90899 0.90432 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 14.32 29.02 0.42 -0.81 16 2 C -0.16 -1.04 8.65 -36.02 -0.31 -1.35 16 3 C -0.06 -0.32 5.03 -27.88 -0.14 -0.46 16 4 C -0.10 -0.64 0.79 -154.85 -0.12 -0.76 16 5 C 0.54 4.91 6.14 -10.98 -0.07 4.84 16 6 O -0.53 -7.12 15.88 5.56 0.09 -7.03 16 7 N -0.72 -5.37 5.14 -52.22 -0.27 -5.63 16 8 C 0.13 1.31 3.57 -66.30 -0.24 1.08 16 9 H 0.11 1.30 7.48 -51.93 -0.39 0.91 16 10 C -0.17 -1.99 6.59 -26.74 -0.18 -2.17 16 11 C 0.52 8.75 7.49 -10.85 -0.08 8.67 16 12 O -0.51 -11.34 14.48 5.56 0.08 -11.26 16 13 N -0.60 -9.28 3.18 -164.63 -0.52 -9.80 16 14 C 0.09 1.77 5.01 -67.82 -0.34 1.43 16 15 C 0.11 2.45 8.24 -8.52 -0.07 2.38 16 16 N -0.60 -16.47 3.78 -184.83 -0.70 -17.17 16 17 C -0.22 -6.36 10.73 -15.06 -0.16 -6.53 16 18 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -28.43 11.58 55.49 0.64 -27.79 16 21 Si 0.91 22.74 29.56 -169.99 -5.03 17.71 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.14 3.59 6.79 -8.52 -0.06 3.54 16 26 C 0.10 1.00 7.07 -3.12 -0.02 0.98 16 27 C -0.11 -0.73 6.75 -25.92 -0.17 -0.90 16 28 C -0.14 -0.65 7.73 -25.92 -0.20 -0.85 16 29 C -0.13 -0.61 7.21 -25.92 -0.19 -0.80 16 30 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 31 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.11 0.76 7.60 -52.49 -0.40 0.37 16 33 H 0.07 0.30 7.79 -51.93 -0.40 -0.11 16 34 H 0.09 0.32 7.30 -51.93 -0.38 -0.06 16 35 H 0.40 1.94 8.43 -40.82 -0.34 1.60 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.87 7.35 -51.93 -0.38 0.49 16 41 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.06 1.73 5.43 -51.93 -0.28 1.45 16 43 H 0.07 1.81 7.20 -51.93 -0.37 1.43 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.55 7.80 -51.93 -0.41 0.15 16 46 H 0.09 0.75 7.81 -51.93 -0.41 0.34 16 47 H 0.07 0.45 7.46 -51.93 -0.39 0.07 16 48 H 0.08 0.29 7.60 -51.93 -0.39 -0.10 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 51 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 LS Contribution 408.81 15.07 6.16 6.16 Total: -1.00 -37.36 408.81 -9.87 -47.23 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -8.30 Total: -0.41 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.03 Total: 7.99 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.85 Total: -60.40 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.17 Total: -18.29 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.71 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.36 -9.87 -47.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108569477.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.157 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds