Wall clock time and date at job start Wed Apr 1 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99700 * 2 1 4 4 C 1.53009 * 109.46800 * 125.00760 * 3 2 1 5 5 C 1.53000 * 109.46830 * 178.96268 * 4 3 2 6 6 C 1.50701 * 115.55065 * 294.56600 * 5 4 3 7 7 O 1.21277 * 120.00195 * 99.96860 * 6 5 4 8 8 N 1.34776 * 119.99801 * 279.97375 * 6 5 4 9 9 C 1.46502 * 119.99754 * 174.75259 * 8 6 5 10 10 H 1.08999 * 110.86224 * 37.32998 * 9 8 6 11 11 C 1.54632 * 110.96970 * 273.54425 * 9 8 6 12 12 C 1.51279 * 104.19611 * 217.08575 * 11 9 8 13 13 O 1.21288 * 124.94191 * 196.23097 * 12 11 9 14 14 N 1.34422 * 110.11896 * 16.24782 * 12 11 9 15 15 C 1.46491 * 124.35369 * 180.40779 * 14 12 11 16 16 C 1.53496 * 114.20744 * 60.02573 * 15 14 12 17 17 N 1.47065 * 87.99276 * 220.34675 * 16 15 14 18 18 C 1.36931 * 136.06158 * 206.86340 * 17 16 15 19 19 H 1.08003 * 119.99668 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00232 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99927 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47469 * 59.99829 * 22 20 18 24 24 H 1.48504 * 109.47159 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47091 * 299.99730 * 22 20 18 26 26 C 1.47067 * 87.87997 * 27.11745 * 17 16 15 27 27 C 1.46765 * 111.29642 * 0.67925 * 14 12 11 28 28 C 1.52993 * 117.52069 * 80.27051 * 5 4 3 29 29 C 1.53000 * 117.49454 * 148.90130 * 5 4 3 30 30 H 1.07998 * 120.00147 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99977 * 359.97438 * 1 2 3 32 32 H 1.07993 * 119.99978 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47687 * 5.00510 * 3 2 1 34 34 H 1.09003 * 109.47457 * 244.99998 * 3 2 1 35 35 H 1.08999 * 109.47119 * 58.95814 * 4 3 2 36 36 H 1.08999 * 109.46658 * 298.96169 * 4 3 2 37 37 H 0.96999 * 120.00799 * 354.74606 * 8 6 5 38 38 H 1.08994 * 110.48672 * 98.40319 * 11 9 8 39 39 H 1.09006 * 110.59347 * 335.81514 * 11 9 8 40 40 H 1.08997 * 113.41669 * 193.22614 * 15 14 12 41 41 H 1.09006 * 113.47184 * 105.56141 * 16 15 14 42 42 H 1.09003 * 113.46528 * 335.13056 * 16 15 14 43 43 H 0.96996 * 119.99858 * 180.02562 * 21 20 18 44 44 H 1.09009 * 113.46724 * 87.66357 * 26 17 16 45 45 H 1.09005 * 113.47066 * 218.09866 * 26 17 16 46 46 H 1.08996 * 110.24965 * 101.71472 * 27 14 12 47 47 H 1.09005 * 110.24560 * 223.71602 * 27 14 12 48 48 H 1.08992 * 117.50151 * 214.96844 * 28 5 4 49 49 H 1.09000 * 117.49831 * 359.97438 * 28 5 4 50 50 H 1.08994 * 117.50617 * 359.97184 * 29 5 4 51 51 H 1.08996 * 117.49752 * 144.99739 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8185 2.6472 1.1667 6 6 4.7431 2.8395 -0.0077 7 8 4.3989 3.5295 -0.9438 8 7 5.9523 2.2445 -0.0178 9 6 6.8039 2.3362 -1.2064 10 1 6.7180 3.3187 -1.6706 11 6 6.4663 1.2155 -2.2169 12 6 7.8071 0.8225 -2.7968 13 8 7.9628 0.1811 -3.8143 14 7 8.8009 1.2872 -2.0200 15 6 10.2262 1.0926 -2.2966 16 6 10.6943 1.6835 -3.6337 17 7 11.5234 0.4824 -3.8151 18 6 12.6807 0.1742 -4.4789 19 1 13.1973 0.9350 -5.0454 20 6 13.1900 -1.1159 -4.4239 21 7 12.5607 -2.0429 -3.7331 22 14 14.7691 -1.5362 -5.3289 23 1 15.8757 -0.6913 -4.8122 24 1 15.0977 -2.9681 -5.1124 25 1 14.5897 -1.2831 -6.7811 26 6 10.5591 -0.2436 -2.9749 27 6 8.2743 2.0092 -0.8558 28 6 3.1265 3.8892 1.7317 29 6 4.2593 3.2221 2.5143 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9352 -0.0004 33 1 1.3586 2.1317 0.0897 34 1 2.6212 1.4027 -0.9314 35 1 3.7284 0.4957 1.1017 36 1 2.4758 1.2540 2.1138 37 1 6.2590 1.7556 0.7618 38 1 5.8080 1.5929 -2.9993 39 1 6.0068 0.3672 -1.7093 40 1 10.8689 1.3367 -1.4508 41 1 11.2751 2.5994 -3.5241 42 1 9.8964 1.7755 -4.3707 43 1 12.9167 -2.9443 -3.6943 44 1 9.7251 -0.6649 -3.5364 45 1 11.0248 -0.9664 -2.3050 46 1 8.3220 1.3790 0.0322 47 1 8.8365 2.9295 -0.6967 48 1 3.3398 4.8453 1.2540 49 1 2.1126 3.7704 2.1138 50 1 3.9909 2.6644 3.4115 51 1 5.2179 3.7394 2.5514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108569939.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:47 Heat of formation + Delta-G solvation = 42.939974 kcal Electronic energy + Delta-G solvation = -30531.856788 eV Core-core repulsion = 26434.872025 eV Total energy + Delta-G solvation = -4096.984763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.94856 -40.11347 -37.82469 -37.23449 -36.34298 -35.35111 -34.13177 -32.19773 -30.60804 -30.35752 -27.63980 -27.23196 -25.10824 -24.51714 -23.68794 -23.27200 -22.86843 -21.46908 -20.59432 -20.08320 -19.83359 -18.39879 -17.28283 -16.98067 -16.70006 -16.28812 -15.97465 -15.62035 -15.49615 -15.00692 -14.68252 -14.51495 -14.34581 -14.00875 -13.93376 -13.56847 -13.51627 -13.48549 -13.24906 -12.68654 -12.65338 -12.42197 -12.12139 -11.98573 -11.86011 -11.70060 -11.61929 -11.44477 -11.43456 -11.17215 -10.87708 -10.86181 -10.76637 -10.50546 -10.17366 -10.06355 -10.02354 -9.66108 -9.63318 -9.38867 -9.16880 -8.65444 -8.15923 -6.81745 -5.72641 -3.05034 1.94283 2.25255 2.60662 2.90115 3.17262 3.27516 3.42572 3.46762 3.48176 4.06610 4.14465 4.28097 4.33060 4.48318 4.48950 4.51211 4.67926 4.79164 4.80089 4.87608 5.04407 5.09933 5.15648 5.21712 5.26058 5.35270 5.38477 5.40238 5.47351 5.51898 5.53919 5.63830 5.64047 5.64909 5.68541 5.70111 5.82577 5.85132 6.12308 6.30328 6.31016 6.43531 6.47750 6.57927 6.87544 7.12780 7.26898 7.47603 7.57464 7.65623 7.87961 8.00356 8.53470 9.07132 9.73489 10.67410 11.44836 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002013 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.841540 B =13908.485244 C =14600.910549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.094 4.094 4 C -0.068 4.068 5 C -0.158 4.158 6 C 0.555 3.445 7 O -0.528 6.528 8 N -0.716 5.716 9 C 0.134 3.866 10 H 0.111 0.889 11 C -0.167 4.167 12 C 0.516 3.484 13 O -0.507 6.507 14 N -0.602 5.602 15 C 0.092 3.908 16 C 0.111 3.889 17 N -0.603 5.603 18 C -0.216 4.216 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.915 3.085 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.141 3.859 27 C 0.100 3.900 28 C -0.144 4.144 29 C -0.163 4.163 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.404 0.596 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.254 0.746 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.139 9.982 18.109 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.106 4.106 5 C -0.161 4.161 6 C 0.340 3.660 7 O -0.403 6.403 8 N -0.368 5.368 9 C 0.029 3.971 10 H 0.129 0.871 11 C -0.209 4.209 12 C 0.302 3.698 13 O -0.382 6.382 14 N -0.337 5.337 15 C -0.011 4.011 16 C -0.017 4.017 17 N -0.329 5.329 18 C -0.343 4.343 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.565 5.565 22 Si 0.745 3.255 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.014 3.986 27 C -0.025 4.025 28 C -0.181 4.181 29 C -0.200 4.200 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.240 0.760 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.915 9.886 16.721 29.285 hybrid contribution 0.928 -0.589 -0.130 1.107 sum -20.987 9.297 16.591 28.322 Atomic orbital electron populations 1.23859 0.95992 1.01802 1.01632 1.22984 0.96086 0.98490 0.99484 1.20740 0.98216 0.95383 0.98813 1.21008 0.96945 0.93392 0.99240 1.21484 1.02350 0.98030 0.94220 1.19515 0.81090 0.78424 0.86928 1.90732 1.74758 1.38015 1.36763 1.45911 1.17544 1.55788 1.17599 1.21860 0.89040 1.00309 0.85902 0.87074 1.22831 0.97421 1.00019 1.00594 1.20605 0.86244 0.79260 0.83724 1.90773 1.85092 1.38662 1.23632 1.48357 1.06781 1.54582 1.24023 1.23808 0.76934 1.02669 0.97691 1.22764 0.93436 0.92040 0.93444 1.45266 1.22252 1.06554 1.58852 1.18854 0.96113 0.94970 1.24391 0.90077 1.24825 0.99328 0.95669 1.00693 1.69836 1.39884 1.02396 1.44368 0.86152 0.82669 0.77210 0.79432 1.21054 1.21536 1.21121 1.22688 0.91979 0.91711 0.92173 1.22218 0.92676 0.97683 0.89882 1.22987 0.97836 0.95706 1.01600 1.23158 1.00063 1.03187 0.93601 0.88566 0.88647 0.87328 0.91145 0.90623 0.90814 0.90599 0.76035 0.87882 0.87799 0.87251 0.94318 0.94405 0.93594 0.91994 0.91423 0.90810 0.89620 0.88023 0.87825 0.87696 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.29 14.32 29.02 0.42 -0.88 16 2 C -0.15 -1.07 9.52 -36.02 -0.34 -1.41 16 3 C -0.09 -0.68 5.54 -27.88 -0.15 -0.84 16 4 C -0.07 -0.39 5.07 -26.73 -0.14 -0.52 16 5 C -0.16 -1.00 1.87 -155.66 -0.29 -1.29 16 6 C 0.55 4.99 6.36 -10.99 -0.07 4.92 16 7 O -0.53 -6.89 16.71 5.56 0.09 -6.79 16 8 N -0.72 -5.20 5.18 -52.13 -0.27 -5.47 16 9 C 0.13 1.27 3.49 -66.20 -0.23 1.04 16 10 H 0.11 1.16 7.66 -51.93 -0.40 0.77 16 11 C -0.17 -1.99 6.58 -26.74 -0.18 -2.17 16 12 C 0.52 8.71 7.49 -10.86 -0.08 8.63 16 13 O -0.51 -11.30 14.49 5.55 0.08 -11.22 16 14 N -0.60 -9.18 3.17 -164.51 -0.52 -9.70 16 15 C 0.09 1.75 5.01 -67.81 -0.34 1.41 16 16 C 0.11 2.44 8.24 -8.52 -0.07 2.37 16 17 N -0.60 -16.44 3.78 -184.80 -0.70 -17.14 16 18 C -0.22 -6.32 10.74 -15.06 -0.16 -6.48 16 19 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.26 11.51 55.49 0.64 -27.62 16 22 Si 0.92 22.73 29.55 -169.99 -5.02 17.71 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.14 3.54 6.80 -8.52 -0.06 3.48 16 27 C 0.10 0.97 7.06 -3.02 -0.02 0.95 16 28 C -0.14 -0.84 9.88 -26.73 -0.26 -1.10 16 29 C -0.16 -0.73 9.92 -26.73 -0.27 -0.99 16 30 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 31 H 0.10 0.58 7.84 -52.48 -0.41 0.17 16 32 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.07 0.52 7.79 -51.93 -0.40 0.11 16 34 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 37 H 0.40 1.91 8.37 -40.82 -0.34 1.57 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.04 0.89 7.40 -51.93 -0.38 0.51 16 43 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.06 1.71 5.39 -51.92 -0.28 1.43 16 45 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 46 H 0.07 0.57 7.77 -51.93 -0.40 0.17 16 47 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 417.86 15.07 6.30 6.30 Total: -1.00 -37.04 417.86 -10.18 -47.22 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.43 Total: -0.06 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -2.34 Total: 6.78 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.85 Total: -59.93 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.17 Total: -18.01 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -37.04 -10.18 -47.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108569939.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.155 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds