Wall clock time and date at job start Wed Apr 1 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99700 * 2 1 4 4 C 1.53009 * 109.46800 * 125.00760 * 3 2 1 5 5 C 1.53000 * 109.46830 * 178.96268 * 4 3 2 6 6 C 1.50701 * 115.55065 * 294.56600 * 5 4 3 7 7 O 1.21277 * 120.00195 * 99.96860 * 6 5 4 8 8 N 1.34776 * 119.99801 * 279.97375 * 6 5 4 9 9 C 1.46502 * 119.99754 * 174.75259 * 8 6 5 10 10 H 1.08999 * 110.86224 * 37.32998 * 9 8 6 11 11 C 1.54632 * 110.96970 * 273.54425 * 9 8 6 12 12 C 1.51279 * 104.19611 * 217.08575 * 11 9 8 13 13 O 1.21288 * 124.94191 * 196.23097 * 12 11 9 14 14 N 1.34422 * 110.11896 * 16.24782 * 12 11 9 15 15 C 1.46491 * 124.35369 * 180.40779 * 14 12 11 16 16 C 1.53496 * 114.20744 * 60.02573 * 15 14 12 17 17 N 1.47065 * 87.99276 * 220.34675 * 16 15 14 18 18 C 1.36931 * 136.06158 * 206.86340 * 17 16 15 19 19 H 1.08003 * 119.99668 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00232 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99927 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47469 * 59.99829 * 22 20 18 24 24 H 1.48504 * 109.47159 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47091 * 299.99730 * 22 20 18 26 26 C 1.47067 * 87.87997 * 27.11745 * 17 16 15 27 27 C 1.46765 * 111.29642 * 0.67925 * 14 12 11 28 28 C 1.52993 * 117.52069 * 80.27051 * 5 4 3 29 29 C 1.53000 * 117.49454 * 148.90130 * 5 4 3 30 30 H 1.07998 * 120.00147 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99977 * 359.97438 * 1 2 3 32 32 H 1.07993 * 119.99978 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47687 * 5.00510 * 3 2 1 34 34 H 1.09003 * 109.47457 * 244.99998 * 3 2 1 35 35 H 1.08999 * 109.47119 * 58.95814 * 4 3 2 36 36 H 1.08999 * 109.46658 * 298.96169 * 4 3 2 37 37 H 0.96999 * 120.00799 * 354.74606 * 8 6 5 38 38 H 1.08994 * 110.48672 * 98.40319 * 11 9 8 39 39 H 1.09006 * 110.59347 * 335.81514 * 11 9 8 40 40 H 1.08997 * 113.41669 * 193.22614 * 15 14 12 41 41 H 1.09006 * 113.47184 * 105.56141 * 16 15 14 42 42 H 1.09003 * 113.46528 * 335.13056 * 16 15 14 43 43 H 0.96996 * 119.99858 * 180.02562 * 21 20 18 44 44 H 1.09009 * 113.46724 * 87.66357 * 26 17 16 45 45 H 1.09005 * 113.47066 * 218.09866 * 26 17 16 46 46 H 1.08996 * 110.24965 * 101.71472 * 27 14 12 47 47 H 1.09005 * 110.24560 * 223.71602 * 27 14 12 48 48 H 1.08992 * 117.50151 * 214.96844 * 28 5 4 49 49 H 1.09000 * 117.49831 * 359.97438 * 28 5 4 50 50 H 1.08994 * 117.50617 * 359.97184 * 29 5 4 51 51 H 1.08996 * 117.49752 * 144.99739 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.8185 2.6472 1.1667 6 6 4.7431 2.8395 -0.0077 7 8 4.3989 3.5295 -0.9438 8 7 5.9523 2.2445 -0.0178 9 6 6.8039 2.3362 -1.2064 10 1 6.7180 3.3187 -1.6706 11 6 6.4663 1.2155 -2.2169 12 6 7.8071 0.8225 -2.7968 13 8 7.9628 0.1811 -3.8143 14 7 8.8009 1.2872 -2.0200 15 6 10.2262 1.0926 -2.2966 16 6 10.6943 1.6835 -3.6337 17 7 11.5234 0.4824 -3.8151 18 6 12.6807 0.1742 -4.4789 19 1 13.1973 0.9350 -5.0454 20 6 13.1900 -1.1159 -4.4239 21 7 12.5607 -2.0429 -3.7331 22 14 14.7691 -1.5362 -5.3289 23 1 15.8757 -0.6913 -4.8122 24 1 15.0977 -2.9681 -5.1124 25 1 14.5897 -1.2831 -6.7811 26 6 10.5591 -0.2436 -2.9749 27 6 8.2743 2.0092 -0.8558 28 6 3.1265 3.8892 1.7317 29 6 4.2593 3.2221 2.5143 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8499 -0.9352 -0.0004 33 1 1.3586 2.1317 0.0897 34 1 2.6212 1.4027 -0.9314 35 1 3.7284 0.4957 1.1017 36 1 2.4758 1.2540 2.1138 37 1 6.2590 1.7556 0.7618 38 1 5.8080 1.5929 -2.9993 39 1 6.0068 0.3672 -1.7093 40 1 10.8689 1.3367 -1.4508 41 1 11.2751 2.5994 -3.5241 42 1 9.8964 1.7755 -4.3707 43 1 12.9167 -2.9443 -3.6943 44 1 9.7251 -0.6649 -3.5364 45 1 11.0248 -0.9664 -2.3050 46 1 8.3220 1.3790 0.0322 47 1 8.8365 2.9295 -0.6967 48 1 3.3398 4.8453 1.2540 49 1 2.1126 3.7704 2.1138 50 1 3.9909 2.6644 3.4115 51 1 5.2179 3.7394 2.5514 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108569939.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:46 Heat of formation + Delta-G solvation = 17.546629 kcal Electronic energy + Delta-G solvation = -30532.957926 eV Core-core repulsion = 26434.872025 eV Total energy + Delta-G solvation = -4098.085901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.00532 -41.06569 -39.21259 -38.25800 -37.47642 -35.85559 -35.25050 -34.18458 -31.70539 -31.02093 -29.26576 -28.49817 -26.43425 -25.81699 -25.22904 -24.06579 -23.27889 -22.39442 -22.14944 -20.64060 -20.56902 -19.83368 -18.79855 -17.90838 -17.85455 -17.61815 -16.99250 -16.57630 -16.42431 -16.32251 -15.87419 -15.62860 -15.51129 -15.11394 -14.88026 -14.81027 -14.63015 -14.43443 -14.05865 -14.01781 -13.69131 -13.48616 -13.25063 -13.19712 -13.12848 -12.83474 -12.79565 -12.65442 -12.35301 -12.29624 -12.22612 -12.05704 -11.98771 -11.93717 -11.36397 -11.32778 -11.13615 -10.94448 -10.78934 -10.61030 -10.15918 -10.11718 -9.58140 -8.96409 -7.94395 -5.29840 1.41693 1.42515 1.47922 1.52338 1.54004 1.59673 1.78625 2.13735 2.47415 2.75146 3.24989 3.29144 3.44889 3.52767 3.62757 3.71655 3.74195 3.89728 3.91478 4.00010 4.06499 4.17422 4.22582 4.32828 4.51579 4.54550 4.54965 4.61619 4.62198 4.73151 4.77510 4.79196 4.83206 4.86469 4.89921 5.01517 5.03456 5.07609 5.17349 5.20180 5.20704 5.28250 5.31846 5.40659 5.44345 5.78582 5.82804 5.86997 5.91605 6.21712 6.53392 6.85073 7.18582 7.23834 7.54303 8.54840 9.23221 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020170 B = 0.002013 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.841540 B =13908.485244 C =14600.910549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C -0.092 4.092 4 C -0.062 4.062 5 C -0.166 4.166 6 C 0.554 3.446 7 O -0.573 6.573 8 N -0.699 5.699 9 C 0.150 3.850 10 H 0.105 0.895 11 C -0.154 4.154 12 C 0.504 3.496 13 O -0.572 6.572 14 N -0.601 5.601 15 C 0.133 3.867 16 C 0.111 3.889 17 N -0.635 5.635 18 C -0.234 4.234 19 H 0.088 0.912 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.988 3.012 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.136 3.864 27 C 0.101 3.899 28 C -0.155 4.155 29 C -0.138 4.138 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.421 0.579 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.250 0.750 44 H 0.029 0.971 45 H 0.038 0.962 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.085 0.915 49 H 0.115 0.885 50 H 0.127 0.873 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 11.272 21.137 32.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.180 4.180 3 C -0.130 4.130 4 C -0.100 4.100 5 C -0.169 4.169 6 C 0.341 3.659 7 O -0.452 6.452 8 N -0.352 5.352 9 C 0.043 3.957 10 H 0.123 0.877 11 C -0.195 4.195 12 C 0.293 3.707 13 O -0.451 6.451 14 N -0.334 5.334 15 C 0.029 3.971 16 C -0.016 4.016 17 N -0.361 5.361 18 C -0.362 4.362 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.602 5.602 22 Si 0.815 3.185 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.009 3.991 27 C -0.021 4.021 28 C -0.193 4.193 29 C -0.175 4.175 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.260 0.740 38 H 0.114 0.886 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.082 0.918 42 H 0.037 0.963 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.125 0.875 47 H 0.131 0.869 48 H 0.103 0.897 49 H 0.133 0.867 50 H 0.145 0.855 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.970 11.227 19.832 31.655 hybrid contribution 0.818 -0.948 -1.099 1.666 sum -21.152 10.278 18.733 30.067 Atomic orbital electron populations 1.24010 0.96021 1.02392 1.00995 1.23049 0.96328 0.98514 1.00068 1.20694 0.98341 0.95411 0.98530 1.21004 0.96703 0.93195 0.99087 1.21418 1.02557 0.98595 0.94338 1.20012 0.81391 0.77435 0.87028 1.90719 1.75679 1.40103 1.38660 1.45728 1.16806 1.55375 1.17337 1.21590 0.89297 0.98779 0.86021 0.87748 1.22747 0.94202 1.01503 1.01060 1.21459 0.88266 0.78089 0.82908 1.90741 1.86297 1.41493 1.26575 1.48326 1.05048 1.54503 1.25542 1.23155 0.79596 0.97123 0.97202 1.22827 0.92534 0.91621 0.94618 1.45690 1.22379 1.08894 1.59125 1.19323 0.97006 0.95483 1.24412 0.89431 1.25792 1.03051 0.95562 1.01882 1.70053 1.41680 1.02442 1.45994 0.85019 0.78724 0.76716 0.78040 1.19240 1.21823 1.20676 1.22532 0.90492 0.94051 0.91982 1.22565 0.92345 0.98863 0.88330 1.23042 0.99195 0.94783 1.02231 1.23277 0.99592 1.01687 0.92938 0.87745 0.88377 0.86923 0.91612 0.93138 0.90100 0.88821 0.74000 0.88608 0.86183 0.84038 0.91758 0.96334 0.94167 0.95283 0.94342 0.87455 0.86899 0.89690 0.86682 0.85522 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.39 14.32 67.78 0.97 -1.42 16 2 C -0.16 -2.10 9.52 25.65 0.24 -1.86 16 3 C -0.09 -1.27 5.54 29.85 0.17 -1.10 16 4 C -0.06 -0.55 5.07 30.60 0.16 -0.40 16 5 C -0.17 -1.71 1.87 -52.93 -0.10 -1.81 16 6 C 0.55 8.97 6.36 87.66 0.56 9.53 16 7 O -0.57 -14.72 16.71 -3.02 -0.05 -14.77 16 8 N -0.70 -8.04 5.18 -437.23 -2.27 -10.31 16 9 C 0.15 2.45 3.49 46.11 0.16 2.61 16 10 H 0.10 1.98 7.66 -2.39 -0.02 1.96 16 11 C -0.15 -3.55 6.58 30.59 0.20 -3.35 16 12 C 0.50 17.22 7.49 87.90 0.66 17.88 16 13 O -0.57 -26.97 14.49 -3.05 -0.04 -27.01 16 14 N -0.60 -17.40 3.17 -792.98 -2.52 -19.92 16 15 C 0.13 4.94 5.01 45.46 0.23 5.17 16 16 C 0.11 4.88 8.24 83.17 0.69 5.56 16 17 N -0.63 -35.34 3.78 -738.58 -2.79 -38.13 16 18 C -0.23 -13.94 10.74 84.03 0.90 -13.04 16 19 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 20 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 21 N -0.95 -60.61 11.51 21.65 0.25 -60.36 16 22 Si 0.99 47.37 29.55 68.60 2.03 49.40 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 26 C 0.14 7.08 6.80 83.17 0.57 7.65 16 27 C 0.10 1.57 7.06 86.89 0.61 2.18 16 28 C -0.16 -1.50 9.88 30.59 0.30 -1.20 16 29 C -0.14 -0.72 9.92 30.59 0.30 -0.42 16 30 H 0.10 1.07 8.06 -2.91 -0.02 1.04 16 31 H 0.10 1.11 7.84 -2.91 -0.02 1.08 16 32 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.07 0.93 7.79 -2.39 -0.02 0.91 16 34 H 0.05 0.94 7.69 -2.39 -0.02 0.93 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.54 8.09 -2.39 -0.02 0.52 16 37 H 0.42 2.16 8.37 -92.71 -0.78 1.38 16 38 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.12 2.40 8.08 -2.38 -0.02 2.38 16 40 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 41 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 42 H 0.02 0.91 7.40 -2.39 -0.02 0.89 16 43 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.03 1.73 5.39 -2.38 -0.01 1.71 16 45 H 0.04 2.19 7.12 -2.38 -0.02 2.17 16 46 H 0.11 1.07 7.77 -2.39 -0.02 1.05 16 47 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -87.21 417.86 1.84 -85.38 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.15 Total: 13.46 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 7.08 Total: 22.27 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.33 Total: -128.73 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.09 Total: -41.78 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -87.21 1.84 -85.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108569939.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.923 kcal (2) G-P(sol) polarization free energy of solvation -87.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds