Wall clock time and date at job start Wed Apr 1 2020 04:30:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52998 * 109.47455 * 2 1
4 4 C 1.50700 * 109.47389 * 120.00399 * 2 1 3
5 5 C 1.37981 * 120.06970 * 306.13324 * 4 2 1
6 6 C 1.38339 * 120.14188 * 179.72720 * 5 4 2
7 7 C 1.38378 * 120.29355 * 0.29183 * 6 5 4
8 8 C 1.37936 * 120.14778 * 0.02562 * 7 6 5
9 9 C 1.39552 * 120.07785 * 126.42595 * 4 2 1
10 10 C 1.47849 * 120.14307 * 359.97438 * 9 4 2
11 11 O 1.21555 * 120.00131 * 39.37156 * 10 9 4
12 12 N 1.34779 * 120.00203 * 219.36408 * 10 9 4
13 13 C 1.46498 * 120.00054 * 179.97438 * 12 10 9
14 14 C 1.53001 * 109.47064 * 180.02562 * 13 12 10
15 15 C 1.52997 * 109.47201 * 180.02562 * 14 13 12
16 16 N 1.46899 * 109.47126 * 180.02562 * 15 14 13
17 17 C 1.46902 * 110.99915 * 179.97438 * 16 15 14
18 18 C 1.50697 * 109.47194 * 180.02562 * 17 16 15
19 19 O 1.21294 * 120.00218 * 0.02562 * 18 17 16
20 20 N 1.34773 * 120.00347 * 180.02562 * 18 17 16
21 21 C 1.37099 * 120.00630 * 179.97438 * 20 18 17
22 22 H 1.08001 * 119.99347 * 0.02562 * 21 20 18
23 23 C 1.38946 * 120.00367 * 179.97438 * 21 20 18
24 24 N 1.31415 * 119.99916 * 359.97438 * 23 21 20
25 25 Si 1.86806 * 120.00032 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.46815 * 359.97438 * 25 23 21
27 27 H 1.48501 * 109.46888 * 119.99829 * 25 23 21
28 28 H 1.48495 * 109.46855 * 240.00079 * 25 23 21
29 29 H 1.09007 * 109.46976 * 299.99600 * 1 2 3
30 30 H 1.08997 * 109.47533 * 60.00019 * 1 2 3
31 31 H 1.08998 * 109.47198 * 180.02562 * 1 2 3
32 32 H 1.08999 * 109.46917 * 240.00057 * 2 1 3
33 33 H 1.09003 * 109.47532 * 180.02562 * 3 2 1
34 34 H 1.09008 * 109.47220 * 300.00299 * 3 2 1
35 35 H 1.08999 * 109.47011 * 60.00114 * 3 2 1
36 36 H 1.08000 * 119.92731 * 359.97438 * 5 4 2
37 37 H 1.07995 * 119.85124 * 180.28095 * 6 5 4
38 38 H 1.08004 * 119.93054 * 179.97438 * 7 6 5
39 39 H 1.08001 * 120.07911 * 179.97438 * 8 7 6
40 40 H 0.97001 * 119.99909 * 0.02562 * 12 10 9
41 41 H 1.08997 * 109.47497 * 300.00315 * 13 12 10
42 42 H 1.09002 * 109.46758 * 60.00425 * 13 12 10
43 43 H 1.08997 * 109.47136 * 300.00433 * 14 13 12
44 44 H 1.09002 * 109.47070 * 60.00513 * 14 13 12
45 45 H 1.09005 * 109.47179 * 299.99971 * 15 14 13
46 46 H 1.09008 * 109.47177 * 60.00020 * 15 14 13
47 47 H 1.00900 * 110.99795 * 56.04921 * 16 15 14
48 48 H 1.08995 * 109.47337 * 300.00311 * 17 16 15
49 49 H 1.09006 * 109.47229 * 60.00326 * 17 16 15
50 50 H 0.97001 * 119.99792 * 359.97438 * 20 18 17
51 51 H 0.97000 * 119.99765 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0323 -0.7105 1.2304
5 6 1.5990 -0.3186 2.4804
6 6 2.0549 -0.9735 3.6105
7 6 2.9521 -2.0207 3.4962
8 6 3.3983 -2.4181 2.2530
9 6 2.9416 -1.7621 1.1085
10 6 3.4147 -2.1835 -0.2274
11 8 3.6539 -1.3492 -1.0784
12 7 3.5810 -3.4926 -0.5015
13 6 4.0493 -3.9100 -1.8253
14 6 4.1509 -5.4359 -1.8726
15 6 4.6406 -5.8719 -3.2549
16 7 4.7376 -7.3370 -3.3004
17 6 5.2053 -7.7930 -4.6162
18 6 5.2915 -9.2974 -4.6251
19 8 4.9923 -9.9279 -3.6330
20 7 5.7011 -9.9425 -5.7352
21 6 5.7801 -11.3112 -5.7432
22 1 5.5136 -11.8725 -4.8598
23 6 6.2019 -11.9762 -6.8879
24 7 6.5246 -11.2933 -7.9632
25 14 6.3087 -13.8412 -6.8988
26 1 5.8931 -14.3685 -5.5743
27 1 5.4115 -14.3822 -7.9513
28 1 7.7069 -14.2552 -7.1793
29 1 -0.3633 0.5138 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0276 0.0005
32 1 1.8932 -0.5138 -0.8900
33 1 3.1301 1.4425 -0.0005
34 1 1.6767 1.9564 -0.8900
35 1 1.6767 1.9563 0.8900
36 1 0.8993 0.4985 2.5765
37 1 1.7091 -0.6658 4.5863
38 1 3.3045 -2.5276 4.3825
39 1 4.0989 -3.2354 2.1651
40 1 3.3898 -4.1583 0.1776
41 1 3.3447 -3.5695 -2.5841
42 1 5.0295 -3.4741 -2.0180
43 1 4.8553 -5.7768 -1.1138
44 1 3.1704 -5.8715 -1.6800
45 1 3.9365 -5.5310 -4.0140
46 1 5.6212 -5.4363 -3.4471
47 1 3.8556 -7.7653 -3.0622
48 1 4.5051 -7.4650 -5.3845
49 1 6.1900 -7.3711 -4.8181
50 1 5.9401 -9.4384 -6.5287
51 1 6.8194 -11.7575 -8.7623
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001159407984.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:32
Heat of formation + Delta-G solvation = -65.321713 kcal
Electronic energy + Delta-G solvation = -28632.559626 eV
Core-core repulsion = 24530.880284 eV
Total energy + Delta-G solvation = -4101.679342 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.85147 -38.88297 -38.31395 -36.60477 -35.79805 -34.80182 -33.85066 -32.20539
-31.26290 -30.79597 -30.21501 -27.44260 -27.20999 -25.16832 -24.00570 -23.82596
-22.89110 -21.75718 -20.75038 -20.34578 -19.23826 -18.10335 -17.85297 -16.76364
-16.52924 -16.16292 -15.89023 -15.76904 -15.18013 -15.15049 -14.57657 -14.44975
-14.35730 -14.25291 -14.17082 -13.81044 -13.76624 -13.49171 -13.37009 -12.96543
-12.74573 -12.58360 -12.41585 -12.14808 -12.02604 -11.87822 -11.81717 -11.49036
-11.46527 -11.44098 -11.17310 -11.09851 -11.06060 -10.94716 -10.34710 -10.23027
-10.01767 -9.52607 -9.45162 -9.31874 -9.12942 -8.48188 -8.08558 -7.96566
-6.42257 -3.83161 0.54729 0.91359 2.43890 2.82107 3.16082 3.26661
3.33918 3.34704 3.90150 4.07478 4.22213 4.28701 4.30867 4.38184
4.56169 4.75159 4.79408 4.88188 4.88834 4.98012 4.98911 5.02892
5.09839 5.16782 5.25300 5.30568 5.38729 5.41331 5.47106 5.49099
5.51106 5.60443 5.61437 5.73117 5.78233 5.80445 5.90007 5.94523
5.96976 5.97480 6.00793 6.01887 6.13717 6.25347 6.26240 6.45252
7.15491 7.17951 7.54946 7.63031 7.87342 8.06016 8.60644 9.17399
9.53814 10.05091 10.75534
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.025269 B = 0.001338 C = 0.001299
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1107.813608 B =20927.166125 C =21556.556571
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.078 4.078
3 C -0.134 4.134
4 C -0.020 4.020
5 C -0.123 4.123
6 C -0.096 4.096
7 C -0.130 4.130
8 C -0.086 4.086
9 C -0.132 4.132
10 C 0.558 3.442
11 O -0.528 6.528
12 N -0.723 5.723
13 C 0.120 3.880
14 C -0.129 4.129
15 C 0.063 3.937
16 N -0.670 5.670
17 C 0.050 3.950
18 C 0.440 3.560
19 O -0.584 6.584
20 N -0.564 5.564
21 C -0.300 4.300
22 H 0.104 0.896
23 C 0.022 3.978
24 N -0.901 5.901
25 Si 0.930 3.070
26 H -0.268 1.268
27 H -0.282 1.282
28 H -0.281 1.281
29 H 0.055 0.945
30 H 0.060 0.940
31 H 0.054 0.946
32 H 0.103 0.897
33 H 0.058 0.942
34 H 0.058 0.942
35 H 0.051 0.949
36 H 0.128 0.872
37 H 0.126 0.874
38 H 0.128 0.872
39 H 0.129 0.871
40 H 0.402 0.598
41 H 0.069 0.931
42 H 0.072 0.928
43 H 0.080 0.920
44 H 0.069 0.931
45 H 0.030 0.970
46 H 0.074 0.926
47 H 0.349 0.651
48 H 0.044 0.956
49 H 0.086 0.914
50 H 0.392 0.608
51 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.327 25.241 19.331 33.428
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.096 4.096
3 C -0.191 4.191
4 C -0.021 4.021
5 C -0.141 4.141
6 C -0.114 4.114
7 C -0.148 4.148
8 C -0.105 4.105
9 C -0.135 4.135
10 C 0.345 3.655
11 O -0.406 6.406
12 N -0.374 5.374
13 C -0.004 4.004
14 C -0.168 4.168
15 C -0.068 4.068
16 N -0.302 5.302
17 C -0.082 4.082
18 C 0.226 3.774
19 O -0.468 6.468
20 N -0.200 5.200
21 C -0.429 4.429
22 H 0.121 0.879
23 C -0.180 4.180
24 N -0.543 5.543
25 Si 0.757 3.243
26 H -0.192 1.192
27 H -0.208 1.208
28 H -0.207 1.207
29 H 0.074 0.926
30 H 0.079 0.921
31 H 0.073 0.927
32 H 0.121 0.879
33 H 0.078 0.922
34 H 0.077 0.923
35 H 0.070 0.930
36 H 0.145 0.855
37 H 0.144 0.856
38 H 0.146 0.854
39 H 0.147 0.853
40 H 0.237 0.763
41 H 0.087 0.913
42 H 0.090 0.910
43 H 0.099 0.901
44 H 0.088 0.912
45 H 0.048 0.952
46 H 0.093 0.907
47 H 0.168 0.832
48 H 0.062 0.938
49 H 0.105 0.895
50 H 0.226 0.774
51 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -9.652 25.302 19.444 33.339
hybrid contribution -0.545 -0.853 -0.759 1.265
sum -10.198 24.449 18.685 32.418
Atomic orbital electron populations
1.21888 0.94489 1.01867 1.01940 1.20487 0.95527 0.96947 0.96632
1.21723 1.01642 0.94360 1.01422 1.19916 0.93748 0.92997 0.95428
1.20990 1.00982 1.00598 0.91564 1.21342 0.96170 0.95207 0.98701
1.21102 0.98367 0.97985 0.97387 1.21303 0.98759 0.98551 0.91867
1.19807 1.01454 0.99179 0.93099 1.18314 0.77415 0.82455 0.87287
1.90757 1.50103 1.51434 1.48326 1.45991 1.68143 1.07216 1.16033
1.21368 1.00357 0.94868 0.83782 1.21747 1.02643 0.93267 0.99109
1.21826 1.00738 0.89125 0.95072 1.60059 1.36391 1.04746 1.28997
1.21672 1.01035 0.95547 0.89964 1.19811 0.84548 0.88368 0.84683
1.90519 1.54329 1.67997 1.33987 1.41872 1.58234 1.07496 1.12431
1.19762 1.41869 0.81513 0.99779 0.87852 1.25268 0.97078 1.00669
0.94939 1.69623 1.45308 1.36419 1.02928 0.85794 0.77815 0.82245
0.78454 1.19214 1.20772 1.20735 0.92628 0.92138 0.92723 0.87875
0.92248 0.92309 0.93019 0.85454 0.85629 0.85396 0.85345 0.76284
0.91272 0.91001 0.90084 0.91212 0.95225 0.90741 0.83193 0.93808
0.89530 0.77441 0.91916
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.99 8.94 37.15 0.33 -0.66 16
2 C -0.08 -0.67 2.65 -91.78 -0.24 -0.92 16
3 C -0.13 -1.06 9.06 37.16 0.34 -0.72 16
4 C -0.02 -0.17 4.81 -104.23 -0.50 -0.67 16
5 C -0.12 -0.84 8.76 -39.64 -0.35 -1.19 16
6 C -0.10 -0.57 10.04 -39.49 -0.40 -0.96 16
7 C -0.13 -0.79 10.03 -39.64 -0.40 -1.19 16
8 C -0.09 -0.61 9.34 -39.18 -0.37 -0.98 16
9 C -0.13 -1.20 5.76 -104.97 -0.61 -1.80 16
10 C 0.56 5.88 6.90 -12.33 -0.09 5.80 16
11 O -0.53 -7.20 14.48 5.32 0.08 -7.12 16
12 N -0.72 -6.13 5.48 -61.25 -0.34 -6.46 16
13 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16
14 C -0.13 -1.19 5.59 -26.73 -0.15 -1.34 16
15 C 0.06 0.72 5.68 -3.83 -0.02 0.70 16
16 N -0.67 -10.51 6.13 -115.05 -0.70 -11.21 16
17 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16
18 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16
19 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16
20 N -0.56 -14.33 5.29 -10.97 -0.06 -14.38 16
21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16
22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16
23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
24 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16
25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16
26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
29 H 0.05 0.31 7.07 -51.93 -0.37 -0.05 16
30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.10 1.14 5.10 -51.93 -0.27 0.87 16
33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16
35 H 0.05 0.33 7.78 -51.93 -0.40 -0.07 16
36 H 0.13 0.66 7.10 -52.49 -0.37 0.29 16
37 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16
38 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16
39 H 0.13 0.69 7.81 -52.49 -0.41 0.28 16
40 H 0.40 2.55 7.86 -40.82 -0.32 2.23 16
41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16
46 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16
47 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16
48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
49 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16
50 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16
51 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16
LS Contribution 421.83 15.07 6.36 6.36
Total: -1.00 -33.52 421.83 -9.92 -43.44
By element:
Atomic # 1 Polarization: 20.93 SS G_CDS: -8.22 Total: 12.70 kcal
Atomic # 6 Polarization: 3.10 SS G_CDS: -2.82 Total: 0.27 kcal
Atomic # 7 Polarization: -55.51 SS G_CDS: -0.37 Total: -55.88 kcal
Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.89 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal
Total LS contribution 6.36 Total: 6.36 kcal
Total: -33.52 -9.92 -43.44 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001159407984.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.881 kcal
(2) G-P(sol) polarization free energy of solvation -33.517 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.322 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds