Wall clock time and date at job start Wed Apr 1 2020 04:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47455 * 2 1 4 4 C 1.50700 * 109.47389 * 120.00399 * 2 1 3 5 5 C 1.37981 * 120.06970 * 306.13324 * 4 2 1 6 6 C 1.38339 * 120.14188 * 179.72720 * 5 4 2 7 7 C 1.38378 * 120.29355 * 0.29183 * 6 5 4 8 8 C 1.37936 * 120.14778 * 0.02562 * 7 6 5 9 9 C 1.39552 * 120.07785 * 126.42595 * 4 2 1 10 10 C 1.47849 * 120.14307 * 359.97438 * 9 4 2 11 11 O 1.21555 * 120.00131 * 39.37156 * 10 9 4 12 12 N 1.34779 * 120.00203 * 219.36408 * 10 9 4 13 13 C 1.46498 * 120.00054 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47064 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47201 * 180.02562 * 14 13 12 16 16 N 1.46899 * 109.47126 * 180.02562 * 15 14 13 17 17 C 1.46902 * 110.99915 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47194 * 180.02562 * 17 16 15 19 19 O 1.21294 * 120.00218 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00347 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00630 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99347 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00367 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99916 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00032 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46815 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46888 * 119.99829 * 25 23 21 28 28 H 1.48495 * 109.46855 * 240.00079 * 25 23 21 29 29 H 1.09007 * 109.46976 * 299.99600 * 1 2 3 30 30 H 1.08997 * 109.47533 * 60.00019 * 1 2 3 31 31 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46917 * 240.00057 * 2 1 3 33 33 H 1.09003 * 109.47532 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47220 * 300.00299 * 3 2 1 35 35 H 1.08999 * 109.47011 * 60.00114 * 3 2 1 36 36 H 1.08000 * 119.92731 * 359.97438 * 5 4 2 37 37 H 1.07995 * 119.85124 * 180.28095 * 6 5 4 38 38 H 1.08004 * 119.93054 * 179.97438 * 7 6 5 39 39 H 1.08001 * 120.07911 * 179.97438 * 8 7 6 40 40 H 0.97001 * 119.99909 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47497 * 300.00315 * 13 12 10 42 42 H 1.09002 * 109.46758 * 60.00425 * 13 12 10 43 43 H 1.08997 * 109.47136 * 300.00433 * 14 13 12 44 44 H 1.09002 * 109.47070 * 60.00513 * 14 13 12 45 45 H 1.09005 * 109.47179 * 299.99971 * 15 14 13 46 46 H 1.09008 * 109.47177 * 60.00020 * 15 14 13 47 47 H 1.00900 * 110.99795 * 56.04921 * 16 15 14 48 48 H 1.08995 * 109.47337 * 300.00311 * 17 16 15 49 49 H 1.09006 * 109.47229 * 60.00326 * 17 16 15 50 50 H 0.97001 * 119.99792 * 359.97438 * 20 18 17 51 51 H 0.97000 * 119.99765 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.5990 -0.3186 2.4804 6 6 2.0549 -0.9735 3.6105 7 6 2.9521 -2.0207 3.4962 8 6 3.3983 -2.4181 2.2530 9 6 2.9416 -1.7621 1.1085 10 6 3.4147 -2.1835 -0.2274 11 8 3.6539 -1.3492 -1.0784 12 7 3.5810 -3.4926 -0.5015 13 6 4.0493 -3.9100 -1.8253 14 6 4.1509 -5.4359 -1.8726 15 6 4.6406 -5.8719 -3.2549 16 7 4.7376 -7.3370 -3.3004 17 6 5.2053 -7.7930 -4.6162 18 6 5.2915 -9.2974 -4.6251 19 8 4.9923 -9.9279 -3.6330 20 7 5.7011 -9.9425 -5.7352 21 6 5.7801 -11.3112 -5.7432 22 1 5.5136 -11.8725 -4.8598 23 6 6.2019 -11.9762 -6.8879 24 7 6.5246 -11.2933 -7.9632 25 14 6.3087 -13.8412 -6.8988 26 1 5.8931 -14.3685 -5.5743 27 1 5.4115 -14.3822 -7.9513 28 1 7.7069 -14.2552 -7.1793 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.8993 0.4985 2.5765 37 1 1.7091 -0.6658 4.5863 38 1 3.3045 -2.5276 4.3825 39 1 4.0989 -3.2354 2.1651 40 1 3.3898 -4.1583 0.1776 41 1 3.3447 -3.5695 -2.5841 42 1 5.0295 -3.4741 -2.0180 43 1 4.8553 -5.7768 -1.1138 44 1 3.1704 -5.8715 -1.6800 45 1 3.9365 -5.5310 -4.0140 46 1 5.6212 -5.4363 -3.4471 47 1 3.8556 -7.7653 -3.0622 48 1 4.5051 -7.4650 -5.3845 49 1 6.1900 -7.3711 -4.8181 50 1 5.9401 -9.4384 -6.5287 51 1 6.8194 -11.7575 -8.7623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159407984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:32 Heat of formation + Delta-G solvation = -65.321713 kcal Electronic energy + Delta-G solvation = -28632.559626 eV Core-core repulsion = 24530.880284 eV Total energy + Delta-G solvation = -4101.679342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.85147 -38.88297 -38.31395 -36.60477 -35.79805 -34.80182 -33.85066 -32.20539 -31.26290 -30.79597 -30.21501 -27.44260 -27.20999 -25.16832 -24.00570 -23.82596 -22.89110 -21.75718 -20.75038 -20.34578 -19.23826 -18.10335 -17.85297 -16.76364 -16.52924 -16.16292 -15.89023 -15.76904 -15.18013 -15.15049 -14.57657 -14.44975 -14.35730 -14.25291 -14.17082 -13.81044 -13.76624 -13.49171 -13.37009 -12.96543 -12.74573 -12.58360 -12.41585 -12.14808 -12.02604 -11.87822 -11.81717 -11.49036 -11.46527 -11.44098 -11.17310 -11.09851 -11.06060 -10.94716 -10.34710 -10.23027 -10.01767 -9.52607 -9.45162 -9.31874 -9.12942 -8.48188 -8.08558 -7.96566 -6.42257 -3.83161 0.54729 0.91359 2.43890 2.82107 3.16082 3.26661 3.33918 3.34704 3.90150 4.07478 4.22213 4.28701 4.30867 4.38184 4.56169 4.75159 4.79408 4.88188 4.88834 4.98012 4.98911 5.02892 5.09839 5.16782 5.25300 5.30568 5.38729 5.41331 5.47106 5.49099 5.51106 5.60443 5.61437 5.73117 5.78233 5.80445 5.90007 5.94523 5.96976 5.97480 6.00793 6.01887 6.13717 6.25347 6.26240 6.45252 7.15491 7.17951 7.54946 7.63031 7.87342 8.06016 8.60644 9.17399 9.53814 10.05091 10.75534 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025269 B = 0.001338 C = 0.001299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.813608 B =20927.166125 C =21556.556571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.020 4.020 5 C -0.123 4.123 6 C -0.096 4.096 7 C -0.130 4.130 8 C -0.086 4.086 9 C -0.132 4.132 10 C 0.558 3.442 11 O -0.528 6.528 12 N -0.723 5.723 13 C 0.120 3.880 14 C -0.129 4.129 15 C 0.063 3.937 16 N -0.670 5.670 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.402 0.598 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.030 0.970 46 H 0.074 0.926 47 H 0.349 0.651 48 H 0.044 0.956 49 H 0.086 0.914 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 25.241 19.331 33.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 C -0.191 4.191 4 C -0.021 4.021 5 C -0.141 4.141 6 C -0.114 4.114 7 C -0.148 4.148 8 C -0.105 4.105 9 C -0.135 4.135 10 C 0.345 3.655 11 O -0.406 6.406 12 N -0.374 5.374 13 C -0.004 4.004 14 C -0.168 4.168 15 C -0.068 4.068 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.237 0.763 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.093 0.907 47 H 0.168 0.832 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.226 0.774 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.652 25.302 19.444 33.339 hybrid contribution -0.545 -0.853 -0.759 1.265 sum -10.198 24.449 18.685 32.418 Atomic orbital electron populations 1.21888 0.94489 1.01867 1.01940 1.20487 0.95527 0.96947 0.96632 1.21723 1.01642 0.94360 1.01422 1.19916 0.93748 0.92997 0.95428 1.20990 1.00982 1.00598 0.91564 1.21342 0.96170 0.95207 0.98701 1.21102 0.98367 0.97985 0.97387 1.21303 0.98759 0.98551 0.91867 1.19807 1.01454 0.99179 0.93099 1.18314 0.77415 0.82455 0.87287 1.90757 1.50103 1.51434 1.48326 1.45991 1.68143 1.07216 1.16033 1.21368 1.00357 0.94868 0.83782 1.21747 1.02643 0.93267 0.99109 1.21826 1.00738 0.89125 0.95072 1.60059 1.36391 1.04746 1.28997 1.21672 1.01035 0.95547 0.89964 1.19811 0.84548 0.88368 0.84683 1.90519 1.54329 1.67997 1.33987 1.41872 1.58234 1.07496 1.12431 1.19762 1.41869 0.81513 0.99779 0.87852 1.25268 0.97078 1.00669 0.94939 1.69623 1.45308 1.36419 1.02928 0.85794 0.77815 0.82245 0.78454 1.19214 1.20772 1.20735 0.92628 0.92138 0.92723 0.87875 0.92248 0.92309 0.93019 0.85454 0.85629 0.85396 0.85345 0.76284 0.91272 0.91001 0.90084 0.91212 0.95225 0.90741 0.83193 0.93808 0.89530 0.77441 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.94 37.15 0.33 -0.66 16 2 C -0.08 -0.67 2.65 -91.78 -0.24 -0.92 16 3 C -0.13 -1.06 9.06 37.16 0.34 -0.72 16 4 C -0.02 -0.17 4.81 -104.23 -0.50 -0.67 16 5 C -0.12 -0.84 8.76 -39.64 -0.35 -1.19 16 6 C -0.10 -0.57 10.04 -39.49 -0.40 -0.96 16 7 C -0.13 -0.79 10.03 -39.64 -0.40 -1.19 16 8 C -0.09 -0.61 9.34 -39.18 -0.37 -0.98 16 9 C -0.13 -1.20 5.76 -104.97 -0.61 -1.80 16 10 C 0.56 5.88 6.90 -12.33 -0.09 5.80 16 11 O -0.53 -7.20 14.48 5.32 0.08 -7.12 16 12 N -0.72 -6.13 5.48 -61.25 -0.34 -6.46 16 13 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 14 C -0.13 -1.19 5.59 -26.73 -0.15 -1.34 16 15 C 0.06 0.72 5.68 -3.83 -0.02 0.70 16 16 N -0.67 -10.51 6.13 -115.05 -0.70 -11.21 16 17 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 18 C 0.44 10.41 7.82 -10.99 -0.09 10.32 16 19 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 20 N -0.56 -14.33 5.29 -10.97 -0.06 -14.38 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.05 0.31 7.07 -51.93 -0.37 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 1.14 5.10 -51.93 -0.27 0.87 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.05 0.33 7.78 -51.93 -0.40 -0.07 16 36 H 0.13 0.66 7.10 -52.49 -0.37 0.29 16 37 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.13 0.51 8.06 -52.48 -0.42 0.08 16 39 H 0.13 0.69 7.81 -52.49 -0.41 0.28 16 40 H 0.40 2.55 7.86 -40.82 -0.32 2.23 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 47 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 48 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 51 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 421.83 15.07 6.36 6.36 Total: -1.00 -33.52 421.83 -9.92 -43.44 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -8.22 Total: 12.70 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.82 Total: 0.27 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.37 Total: -55.88 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.89 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.52 -9.92 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159407984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.881 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds