Wall clock time and date at job start Wed Apr 1 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 C 1.53006 * 109.47231 * 240.00075 * 2 1 3 5 5 C 1.50696 * 109.47306 * 120.00228 * 2 1 3 6 6 N 1.29935 * 125.38035 * 60.34226 * 5 2 1 7 7 C 1.36064 * 108.48308 * 180.16564 * 6 5 2 8 8 C 1.47414 * 126.45684 * 179.82260 * 7 6 5 9 9 O 1.21615 * 120.00652 * 179.71648 * 8 7 6 10 10 N 1.34784 * 119.99788 * 359.71822 * 8 7 6 11 11 C 1.46494 * 120.00109 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47191 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47225 * 179.97438 * 12 11 10 14 14 C 1.29452 * 117.69233 * 95.00476 * 13 12 11 15 15 C 1.50327 * 123.65264 * 180.57855 * 14 13 12 16 16 N 1.47000 * 109.16339 * 349.27440 * 15 14 13 17 17 C 1.36939 * 121.37519 * 222.96589 * 16 15 14 18 18 H 1.08005 * 119.99838 * 155.97782 * 17 16 15 19 19 C 1.38810 * 120.00205 * 335.97906 * 17 16 15 20 20 N 1.31617 * 119.99875 * 344.51418 * 19 17 16 21 21 Si 1.86807 * 119.99988 * 164.50951 * 19 17 16 22 22 H 1.48498 * 109.46949 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46820 * 120.00005 * 21 19 17 24 24 H 1.48497 * 109.46961 * 240.00068 * 21 19 17 25 25 C 1.47340 * 117.24944 * 42.95351 * 16 15 14 26 26 C 1.49965 * 117.69465 * 275.22225 * 13 12 11 27 27 C 1.36096 * 107.09772 * 359.56315 * 7 6 5 28 28 O 1.34049 * 125.38064 * 240.02447 * 5 2 1 29 29 H 1.08995 * 109.46365 * 300.00114 * 1 2 3 30 30 H 1.08997 * 109.46626 * 59.99390 * 1 2 3 31 31 H 1.08994 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47613 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47383 * 299.99943 * 3 2 1 34 34 H 1.09006 * 109.47131 * 60.00160 * 3 2 1 35 35 H 1.09005 * 109.47027 * 300.00477 * 4 2 1 36 36 H 1.09000 * 109.46928 * 59.99924 * 4 2 1 37 37 H 1.08995 * 109.47131 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.47398 * 59.99913 * 11 10 8 40 40 H 1.09000 * 109.47227 * 299.99632 * 11 10 8 41 41 H 1.09004 * 109.46997 * 60.00223 * 12 11 10 42 42 H 1.08997 * 109.47552 * 300.00263 * 12 11 10 43 43 H 1.08007 * 118.17640 * 0.85757 * 14 13 12 44 44 H 1.08998 * 109.52186 * 109.18887 * 15 14 13 45 45 H 1.08999 * 109.51691 * 229.36942 * 15 14 13 46 46 H 0.97002 * 119.99820 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.78029 * 57.80236 * 25 16 15 48 48 H 1.09002 * 109.77908 * 178.61294 * 25 16 15 49 49 H 1.08998 * 109.43384 * 40.82027 * 26 13 12 50 50 H 1.09000 * 109.13218 * 281.42810 * 26 13 12 51 51 H 1.08001 * 126.52281 * 180.23762 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7889 -1.9497 1.5356 7 6 2.4044 -2.2322 2.7158 8 6 2.3841 -3.5231 3.4273 9 8 2.9830 -3.6477 4.4784 10 7 1.7018 -4.5655 2.9129 11 6 1.6821 -5.8485 3.6196 12 6 0.8428 -6.8537 2.8285 13 6 0.8230 -8.1737 3.5551 14 6 -0.1749 -8.4108 4.3449 15 6 -0.3230 -9.6757 5.1435 16 7 0.6742 -10.6544 4.6867 17 6 0.3480 -11.9714 4.5018 18 1 0.9291 -12.5820 3.8266 19 6 -0.7295 -12.5217 5.1822 20 7 -1.2460 -11.8920 6.2161 21 14 -1.4465 -14.1560 4.6304 22 1 -0.6914 -14.6556 3.4533 23 1 -1.3445 -15.1404 5.7376 24 1 -2.8732 -13.9715 4.2620 25 6 2.0392 -10.1596 4.4358 26 6 1.9633 -9.1180 3.3163 27 6 3.0471 -1.1002 3.1129 28 8 2.8059 -0.1654 2.1798 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2490 38 1 1.2239 -4.4660 2.0747 39 1 1.2466 -5.7115 4.6094 40 1 2.7005 -6.2240 3.7195 41 1 1.2779 -6.9909 1.8385 42 1 -0.1756 -6.4781 2.7288 43 1 -0.9463 -7.6598 4.4316 44 1 -0.1645 -9.4601 6.2001 45 1 -1.3243 -10.0819 5.0000 46 1 -1.9988 -12.2767 6.6918 47 1 2.4372 -9.7002 5.3405 48 1 2.6802 -10.9858 4.1280 49 1 2.8973 -8.5573 3.2815 50 1 1.8142 -9.6241 2.3625 51 1 3.6383 -0.9772 4.0083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160119739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:37 Heat of formation + Delta-G solvation = 6.017280 kcal Electronic energy + Delta-G solvation = -29629.644153 eV Core-core repulsion = 25531.058302 eV Total energy + Delta-G solvation = -4098.585851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.84265 -39.65254 -37.87745 -37.51453 -35.44268 -35.14042 -33.49963 -31.38005 -30.31276 -29.79600 -28.69848 -27.90818 -27.84888 -25.67663 -24.19959 -23.65036 -22.84755 -22.31841 -21.00202 -20.83776 -19.86396 -18.24114 -17.57328 -17.20342 -16.76786 -16.25837 -15.76894 -15.59538 -15.39222 -14.97204 -14.76384 -14.57126 -14.15684 -14.05365 -13.97254 -13.65103 -13.52900 -13.28404 -12.90581 -12.82110 -12.61762 -12.23894 -12.20833 -12.18506 -11.96785 -11.81274 -11.59098 -11.57402 -11.44370 -11.37903 -11.12923 -10.97593 -10.89702 -10.72164 -10.44081 -10.25458 -10.15206 -9.78386 -9.51643 -9.42419 -9.09492 -8.63138 -7.88913 -6.69412 -5.75910 -3.14482 0.78524 1.66826 2.14175 2.79525 3.08443 3.10726 3.39338 3.40301 3.46828 3.49146 4.16189 4.27001 4.30022 4.52174 4.55168 4.58957 5.01122 5.04165 5.06914 5.14479 5.19673 5.20267 5.23545 5.30568 5.31377 5.31930 5.39239 5.42758 5.51786 5.59468 5.67320 5.68643 5.71558 5.77518 5.83251 6.04197 6.07657 6.18064 6.25084 6.34330 6.43665 6.59276 6.82542 6.94160 7.05622 7.27298 7.35639 7.41377 7.45685 7.78523 7.91909 8.01098 8.42225 9.23719 9.86653 10.45400 11.34506 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.001667 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.814805 B =16788.832728 C =17294.693926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.148 4.148 4 C -0.141 4.141 5 C 0.207 3.793 6 N -0.457 5.457 7 C -0.069 4.069 8 C 0.599 3.401 9 O -0.536 6.536 10 N -0.710 5.710 11 C 0.124 3.876 12 C -0.091 4.091 13 C -0.142 4.142 14 C -0.146 4.146 15 C 0.196 3.804 16 N -0.596 5.596 17 C -0.244 4.244 18 H 0.069 0.931 19 C -0.003 4.003 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.143 3.857 26 C -0.091 4.091 27 C 0.009 3.991 28 O -0.193 6.193 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.408 0.592 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.091 0.909 46 H 0.253 0.747 47 H 0.024 0.976 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 28.739 -14.213 32.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 C -0.206 4.206 4 C -0.198 4.198 5 C -0.002 4.002 6 N -0.186 5.186 7 C -0.190 4.190 8 C 0.384 3.616 9 O -0.414 6.414 10 N -0.361 5.361 11 C 0.001 3.999 12 C -0.129 4.129 13 C -0.143 4.143 14 C -0.166 4.166 15 C 0.071 3.929 16 N -0.319 5.319 17 C -0.373 4.373 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.016 3.984 26 C -0.130 4.130 27 C -0.065 4.065 28 O -0.079 6.079 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.243 0.757 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.063 0.937 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 5.889 28.125 -13.716 31.841 hybrid contribution -0.275 -0.319 -0.048 0.424 sum 5.614 27.806 -13.763 31.530 Atomic orbital electron populations 1.21921 0.91366 1.03728 1.02823 1.19196 0.96653 0.94567 0.86570 1.21934 1.01947 0.93466 1.03209 1.21923 1.01553 1.01376 0.94967 1.26274 0.92850 0.88474 0.92630 1.70688 1.21934 1.13550 1.12427 1.21846 1.04518 0.97178 0.95411 1.16741 0.79267 0.81771 0.83870 1.90849 1.44836 1.83327 1.22340 1.45904 1.51875 1.11471 1.26801 1.21521 1.01358 0.81019 0.96014 1.20905 0.99733 0.93597 0.98687 1.20215 0.98530 0.94729 1.00804 1.23126 0.96428 0.99998 0.97037 1.19706 0.95261 0.84284 0.93614 1.44137 1.03724 1.05125 1.78891 1.19232 1.12837 0.86166 1.19076 0.91361 1.24991 1.01022 0.98073 0.95960 1.70030 1.26476 1.39745 1.19234 0.86187 0.78928 0.83496 0.77981 1.20335 1.21779 1.21643 1.20953 0.88219 0.94708 0.94478 1.20762 0.94944 0.96585 1.00749 1.25319 1.00754 0.86244 0.94196 1.84395 1.54254 1.40730 1.28511 0.92112 0.90750 0.90950 0.91729 0.90776 0.91717 0.90951 0.90751 0.92131 0.75705 0.90994 0.90979 0.91372 0.91441 0.89058 0.94424 0.89146 0.93710 0.95843 0.92544 0.92847 0.91960 0.75280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.46 37.16 0.31 -0.40 16 2 C 0.03 0.18 0.99 -155.66 -0.15 0.03 16 3 C -0.15 -0.62 8.01 37.16 0.30 -0.32 16 4 C -0.14 -0.70 8.45 37.16 0.31 -0.39 16 5 C 0.21 1.82 6.44 -13.08 -0.08 1.73 16 6 N -0.46 -4.84 11.05 -7.66 -0.08 -4.92 16 7 C -0.07 -0.80 6.99 -83.02 -0.58 -1.38 16 8 C 0.60 8.15 7.81 -12.52 -0.10 8.05 16 9 O -0.54 -8.84 16.89 5.26 0.09 -8.75 16 10 N -0.71 -8.80 5.55 -61.39 -0.34 -9.14 16 11 C 0.12 1.69 5.66 -4.04 -0.02 1.66 16 12 C -0.09 -1.25 5.32 -27.89 -0.15 -1.39 16 13 C -0.14 -2.50 5.11 -100.99 -0.52 -3.02 16 14 C -0.15 -2.89 9.47 -35.78 -0.34 -3.23 16 15 C 0.20 4.80 5.23 -5.10 -0.03 4.78 16 16 N -0.60 -15.28 3.01 -173.68 -0.52 -15.80 16 17 C -0.24 -6.79 9.71 -15.06 -0.15 -6.94 16 18 H 0.07 1.86 7.88 -52.48 -0.41 1.45 16 19 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 20 N -0.91 -26.65 11.08 55.49 0.61 -26.03 16 21 Si 0.90 21.96 29.58 -169.99 -5.03 16.94 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.14 3.07 6.58 -3.53 -0.02 3.05 16 26 C -0.09 -1.65 5.94 -28.19 -0.17 -1.81 16 27 C 0.01 0.08 11.95 29.96 0.36 0.44 16 28 O -0.19 -1.71 10.11 6.52 0.07 -1.64 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.41 4.39 8.20 -40.82 -0.33 4.06 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 41 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 42 H 0.07 0.87 7.78 -51.93 -0.40 0.46 16 43 H 0.09 1.60 7.73 -52.48 -0.41 1.20 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 49 H 0.05 0.83 8.07 -51.93 -0.42 0.42 16 50 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.23 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 418.16 15.07 6.30 6.30 Total: -1.00 -32.93 418.16 -8.63 -41.56 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.62 Total: 0.78 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.11 Total: 0.70 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.33 Total: -55.90 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.15 Total: -10.39 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.93 -8.63 -41.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160119739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.581 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds