Wall clock time and date at job start Wed Apr 1 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 C 1.53006 * 109.47231 * 240.00075 * 2 1 3 5 5 C 1.50696 * 109.47306 * 120.00228 * 2 1 3 6 6 N 1.29935 * 125.38035 * 60.34226 * 5 2 1 7 7 C 1.36064 * 108.48308 * 180.16564 * 6 5 2 8 8 C 1.47414 * 126.45684 * 179.82260 * 7 6 5 9 9 O 1.21615 * 120.00652 * 179.71648 * 8 7 6 10 10 N 1.34784 * 119.99788 * 359.71822 * 8 7 6 11 11 C 1.46494 * 120.00109 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47191 * 179.97438 * 11 10 8 13 13 C 1.50695 * 109.47225 * 179.97438 * 12 11 10 14 14 C 1.29452 * 117.69233 * 95.00476 * 13 12 11 15 15 C 1.50327 * 123.65264 * 180.57855 * 14 13 12 16 16 N 1.47000 * 109.16339 * 349.27440 * 15 14 13 17 17 C 1.36939 * 121.37519 * 222.96589 * 16 15 14 18 18 H 1.08005 * 119.99838 * 155.97782 * 17 16 15 19 19 C 1.38810 * 120.00205 * 335.97906 * 17 16 15 20 20 N 1.31617 * 119.99875 * 344.51418 * 19 17 16 21 21 Si 1.86807 * 119.99988 * 164.50951 * 19 17 16 22 22 H 1.48498 * 109.46949 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46820 * 120.00005 * 21 19 17 24 24 H 1.48497 * 109.46961 * 240.00068 * 21 19 17 25 25 C 1.47340 * 117.24944 * 42.95351 * 16 15 14 26 26 C 1.49965 * 117.69465 * 275.22225 * 13 12 11 27 27 C 1.36096 * 107.09772 * 359.56315 * 7 6 5 28 28 O 1.34049 * 125.38064 * 240.02447 * 5 2 1 29 29 H 1.08995 * 109.46365 * 300.00114 * 1 2 3 30 30 H 1.08997 * 109.46626 * 59.99390 * 1 2 3 31 31 H 1.08994 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47613 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47383 * 299.99943 * 3 2 1 34 34 H 1.09006 * 109.47131 * 60.00160 * 3 2 1 35 35 H 1.09005 * 109.47027 * 300.00477 * 4 2 1 36 36 H 1.09000 * 109.46928 * 59.99924 * 4 2 1 37 37 H 1.08995 * 109.47131 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99724 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.47398 * 59.99913 * 11 10 8 40 40 H 1.09000 * 109.47227 * 299.99632 * 11 10 8 41 41 H 1.09004 * 109.46997 * 60.00223 * 12 11 10 42 42 H 1.08997 * 109.47552 * 300.00263 * 12 11 10 43 43 H 1.08007 * 118.17640 * 0.85757 * 14 13 12 44 44 H 1.08998 * 109.52186 * 109.18887 * 15 14 13 45 45 H 1.08999 * 109.51691 * 229.36942 * 15 14 13 46 46 H 0.97002 * 119.99820 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.78029 * 57.80236 * 25 16 15 48 48 H 1.09002 * 109.77908 * 178.61294 * 25 16 15 49 49 H 1.08998 * 109.43384 * 40.82027 * 26 13 12 50 50 H 1.09000 * 109.13218 * 281.42810 * 26 13 12 51 51 H 1.08001 * 126.52281 * 180.23762 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 1.7889 -1.9497 1.5356 7 6 2.4044 -2.2322 2.7158 8 6 2.3841 -3.5231 3.4273 9 8 2.9830 -3.6477 4.4784 10 7 1.7018 -4.5655 2.9129 11 6 1.6821 -5.8485 3.6196 12 6 0.8428 -6.8537 2.8285 13 6 0.8230 -8.1737 3.5551 14 6 -0.1749 -8.4108 4.3449 15 6 -0.3230 -9.6757 5.1435 16 7 0.6742 -10.6544 4.6867 17 6 0.3480 -11.9714 4.5018 18 1 0.9291 -12.5820 3.8266 19 6 -0.7295 -12.5217 5.1822 20 7 -1.2460 -11.8920 6.2161 21 14 -1.4465 -14.1560 4.6304 22 1 -0.6914 -14.6556 3.4533 23 1 -1.3445 -15.1404 5.7376 24 1 -2.8732 -13.9715 4.2620 25 6 2.0392 -10.1596 4.4358 26 6 1.9633 -9.1180 3.3163 27 6 3.0471 -1.1002 3.1129 28 8 2.8059 -0.1654 2.1798 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2490 38 1 1.2239 -4.4660 2.0747 39 1 1.2466 -5.7115 4.6094 40 1 2.7005 -6.2240 3.7195 41 1 1.2779 -6.9909 1.8385 42 1 -0.1756 -6.4781 2.7288 43 1 -0.9463 -7.6598 4.4316 44 1 -0.1645 -9.4601 6.2001 45 1 -1.3243 -10.0819 5.0000 46 1 -1.9988 -12.2767 6.6918 47 1 2.4372 -9.7002 5.3405 48 1 2.6802 -10.9858 4.1280 49 1 2.8973 -8.5573 3.2815 50 1 1.8142 -9.6241 2.3625 51 1 3.6383 -0.9772 4.0083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160119739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:36 Heat of formation + Delta-G solvation = -16.084128 kcal Electronic energy + Delta-G solvation = -29630.602542 eV Core-core repulsion = 25531.058302 eV Total energy + Delta-G solvation = -4099.544240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.55815 -40.72793 -39.47057 -37.95394 -36.80691 -35.92139 -35.09400 -33.16181 -31.53113 -31.08897 -30.14577 -28.26266 -28.21707 -27.31159 -25.43885 -24.51065 -24.26440 -23.65080 -22.49129 -21.81887 -20.58612 -19.47327 -19.02163 -17.92210 -17.71673 -17.44715 -17.09633 -16.90422 -16.52049 -16.20722 -15.76186 -15.49700 -15.45249 -15.19410 -15.00902 -14.89021 -14.81512 -14.42875 -14.30126 -13.88097 -13.40164 -13.26024 -13.22168 -13.09349 -12.88010 -12.81355 -12.61951 -12.60928 -12.59073 -12.45991 -12.36603 -12.13760 -12.07975 -11.97186 -11.92456 -11.78562 -11.68261 -11.47407 -11.16187 -10.69811 -10.32729 -10.01108 -9.50396 -8.75579 -7.88445 -5.30565 0.01199 0.89408 1.38035 1.46001 1.46942 1.50464 1.58107 2.03088 2.15233 2.50628 2.70892 3.28341 3.57089 3.65757 3.67619 3.88820 3.91906 3.94069 4.04078 4.07976 4.10408 4.26999 4.41412 4.54214 4.54888 4.56835 4.66328 4.74052 4.75233 4.84013 4.85012 4.86631 4.90138 4.95506 4.95894 4.96171 5.04086 5.07240 5.16325 5.23048 5.27939 5.29510 5.34702 5.38576 5.41166 5.49881 5.60805 5.86671 6.22182 6.27563 6.33371 6.53221 7.00784 7.12792 7.82820 8.37836 9.20403 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.001667 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.814805 B =16788.832728 C =17294.693926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.029 3.971 3 C -0.145 4.145 4 C -0.138 4.138 5 C 0.209 3.791 6 N -0.473 5.473 7 C -0.099 4.099 8 C 0.598 3.402 9 O -0.572 6.572 10 N -0.701 5.701 11 C 0.132 3.868 12 C -0.079 4.079 13 C -0.119 4.119 14 C -0.173 4.173 15 C 0.206 3.794 16 N -0.615 5.615 17 C -0.256 4.256 18 H 0.072 0.928 19 C -0.058 4.058 20 N -0.942 5.942 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.292 1.292 24 H -0.290 1.290 25 C 0.135 3.865 26 C -0.087 4.087 27 C 0.024 3.976 28 O -0.191 6.191 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.417 0.583 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.003 0.997 45 H 0.055 0.945 46 H 0.249 0.751 47 H 0.018 0.982 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.068 0.932 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 30.682 -17.029 35.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.028 3.972 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.001 4.001 6 N -0.202 5.202 7 C -0.218 4.218 8 C 0.385 3.615 9 O -0.452 6.452 10 N -0.351 5.351 11 C 0.009 3.991 12 C -0.116 4.116 13 C -0.120 4.120 14 C -0.192 4.192 15 C 0.081 3.919 16 N -0.339 5.339 17 C -0.386 4.386 18 H 0.089 0.911 19 C -0.252 4.252 20 N -0.589 5.589 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.219 1.219 24 H -0.217 1.217 25 C 0.010 3.990 26 C -0.126 4.126 27 C -0.051 4.051 28 O -0.077 6.077 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.130 0.870 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.036 0.964 48 H 0.078 0.922 49 H 0.105 0.895 50 H 0.087 0.913 51 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.540 30.077 -16.576 34.960 hybrid contribution -0.381 -0.860 0.804 1.238 sum 6.159 29.217 -15.771 33.769 Atomic orbital electron populations 1.21924 0.90800 1.03124 1.03765 1.19457 0.97027 0.95284 0.85422 1.21938 1.01800 0.92365 1.04148 1.21924 1.01317 1.00836 0.95486 1.27024 0.91888 0.88164 0.93006 1.70650 1.22616 1.14602 1.12329 1.21669 1.06655 0.96976 0.96458 1.16991 0.78578 0.82504 0.83463 1.90824 1.46410 1.84048 1.23894 1.45763 1.51629 1.10826 1.26926 1.21296 1.00806 0.81590 0.95439 1.20791 1.00919 0.90999 0.98910 1.20532 0.96757 0.96002 0.98714 1.22831 0.98898 0.98657 0.98835 1.19353 0.93452 0.86203 0.92852 1.44424 1.05587 1.04868 1.79006 1.19585 1.12941 0.87344 1.18774 0.91054 1.25804 1.01608 1.01650 0.96144 1.70205 1.26843 1.41384 1.20448 0.85141 0.77902 0.79338 0.77692 1.18945 1.21946 1.21702 1.21152 0.86317 0.95895 0.95628 1.20722 0.96697 0.95972 0.99199 1.25778 0.99441 0.85512 0.94351 1.84435 1.54221 1.40525 1.28490 0.92569 0.88429 0.92305 0.91962 0.88636 0.92023 0.92274 0.88441 0.92494 0.74587 0.92555 0.91520 0.89064 0.90040 0.86991 0.97899 0.92636 0.94156 0.96352 0.92156 0.89537 0.91325 0.73035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.46 71.98 0.61 -0.51 16 2 C 0.03 0.28 0.99 -52.93 -0.05 0.22 16 3 C -0.15 -0.84 8.01 71.98 0.58 -0.27 16 4 C -0.14 -1.08 8.45 71.98 0.61 -0.48 16 5 C 0.21 3.36 6.44 88.39 0.57 3.93 16 6 N -0.47 -9.49 11.05 -293.04 -3.24 -12.73 16 7 C -0.10 -2.18 6.99 40.41 0.28 -1.89 16 8 C 0.60 15.85 7.81 86.66 0.68 16.52 16 9 O -0.57 -18.69 16.89 -4.08 -0.07 -18.76 16 10 N -0.70 -16.33 5.55 -466.38 -2.59 -18.92 16 11 C 0.13 3.37 5.66 86.38 0.49 3.86 16 12 C -0.08 -1.91 5.32 29.85 0.16 -1.76 16 13 C -0.12 -3.99 5.11 -15.14 -0.08 -4.07 16 14 C -0.17 -6.82 9.47 27.11 0.26 -6.57 16 15 C 0.21 10.55 5.23 85.42 0.45 11.00 16 16 N -0.61 -32.24 3.01 -703.40 -2.12 -34.35 16 17 C -0.26 -14.53 9.71 84.03 0.82 -13.71 16 18 H 0.07 3.90 7.88 -2.91 -0.02 3.88 16 19 C -0.06 -3.30 5.01 84.86 0.43 -2.88 16 20 N -0.94 -57.35 11.08 21.65 0.24 -57.11 16 21 Si 0.97 45.90 29.58 68.60 2.03 47.93 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.14 5.78 6.58 86.25 0.57 6.35 16 26 C -0.09 -2.96 5.94 29.65 0.18 -2.78 16 27 C 0.02 0.40 11.95 67.32 0.80 1.21 16 28 O -0.19 -3.07 10.11 0.40 0.00 -3.07 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 34 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.42 8.17 8.20 -92.71 -0.76 7.41 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.80 8.07 -2.39 -0.02 1.78 16 41 H 0.09 1.90 8.11 -2.38 -0.02 1.88 16 42 H 0.08 1.83 7.78 -2.39 -0.02 1.82 16 43 H 0.11 3.89 7.73 -2.91 -0.02 3.87 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.06 3.17 6.41 -2.39 -0.02 3.15 16 46 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 49 H 0.09 2.41 8.07 -2.39 -0.02 2.39 16 50 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 51 H 0.25 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -73.80 418.16 1.75 -72.05 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.16 Total: 16.77 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 7.33 Total: 8.18 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -7.71 Total: -123.11 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.80 1.75 -72.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160119739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.970 kcal (2) G-P(sol) polarization free energy of solvation -73.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds