Wall clock time and date at job start Wed Apr 1 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 C 1.50708 * 109.47076 * 180.02562 * 3 2 1 5 5 C 1.38361 * 119.85196 * 270.25154 * 4 3 2 6 6 C 1.37955 * 120.14138 * 180.25817 * 5 4 3 7 7 C 1.39575 * 119.85263 * 359.49245 * 6 5 4 8 8 C 1.47848 * 120.14487 * 180.27853 * 7 6 5 9 9 O 1.21550 * 119.99883 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00150 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00008 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47072 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47040 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47093 * 180.02562 * 13 12 11 15 15 C 1.46906 * 111.00136 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47118 * 179.97438 * 15 14 13 17 17 O 1.21296 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99925 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99699 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00870 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99529 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00310 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99916 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46805 * 89.99711 * 23 21 19 25 25 H 1.48501 * 109.47055 * 209.99830 * 23 21 19 26 26 H 1.48498 * 109.46938 * 329.99743 * 23 21 19 27 27 C 1.39579 * 119.71401 * 0.25207 * 7 6 5 28 28 C 1.37958 * 119.84937 * 0.02562 * 27 7 6 29 29 H 1.09004 * 109.47067 * 299.99975 * 1 2 3 30 30 H 1.09008 * 109.46994 * 59.99721 * 1 2 3 31 31 H 1.08993 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47067 * 240.00025 * 2 1 3 33 33 H 1.08994 * 109.47476 * 120.00173 * 2 1 3 34 34 H 1.08997 * 109.47366 * 60.00289 * 3 2 1 35 35 H 1.09000 * 109.47611 * 300.00081 * 3 2 1 36 36 H 1.07998 * 119.92846 * 0.02562 * 5 4 3 37 37 H 1.08002 * 120.07573 * 179.77464 * 6 5 4 38 38 H 0.96996 * 119.99601 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47252 * 300.00049 * 11 10 8 40 40 H 1.09007 * 109.46893 * 60.00137 * 11 10 8 41 41 H 1.09005 * 109.46987 * 299.99854 * 12 11 10 42 42 H 1.08998 * 109.47290 * 60.00029 * 12 11 10 43 43 H 1.09005 * 109.46818 * 299.99598 * 13 12 11 44 44 H 1.08993 * 109.47662 * 60.00361 * 13 12 11 45 45 H 1.00895 * 111.00310 * 56.04058 * 14 13 12 46 46 H 1.08998 * 109.46520 * 299.99446 * 15 14 13 47 47 H 1.08999 * 109.46730 * 59.99562 * 15 14 13 48 48 H 0.96997 * 119.99667 * 359.97438 * 18 16 15 49 49 H 0.96997 * 120.00213 * 180.02562 * 22 21 19 50 50 H 1.07997 * 120.07575 * 180.02562 * 27 7 6 51 51 H 1.08006 * 119.92205 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2363 1.4370 1.1991 6 6 5.6158 1.4423 1.2055 7 6 6.3162 1.4425 -0.0018 8 6 7.7947 1.4419 -0.0025 9 8 8.4029 1.4418 1.0499 10 7 8.4681 1.4426 -1.1700 11 6 9.9331 1.4426 -1.1706 12 6 10.4425 1.4429 -2.6133 13 6 11.9724 1.4422 -2.6139 14 7 12.4615 1.4431 -3.9991 15 6 13.9300 1.4431 -4.0390 16 6 14.3936 1.4433 -5.4728 17 8 13.5807 1.4430 -6.3731 18 7 15.7116 1.4439 -5.7549 19 6 16.1333 1.4447 -7.0594 20 1 15.4095 1.4443 -7.8611 21 6 17.4920 1.4447 -7.3502 22 7 18.3727 1.4446 -6.3749 23 14 18.0668 1.4450 -9.1277 24 1 18.2189 2.8452 -9.5984 25 1 19.3728 0.7451 -9.2257 26 1 17.0654 0.7450 -9.9717 27 6 5.6148 1.4426 -1.2086 28 6 4.2352 1.4431 -1.2009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.6931 1.4323 2.1325 37 1 6.1527 1.4417 2.1426 38 1 7.9827 1.4431 -2.0097 39 1 10.2966 2.3323 -0.6564 40 1 10.2966 0.5523 -0.6574 41 1 10.0789 0.5529 -3.1271 42 1 10.0789 2.3329 -3.1268 43 1 12.3363 2.3320 -2.1000 44 1 12.3357 0.5520 -2.1006 45 1 12.0861 2.2249 -4.5147 46 1 14.3070 2.3329 -3.5347 47 1 14.3071 0.5529 -3.5356 48 1 16.3616 1.4446 -5.0350 49 1 19.3212 1.4451 -6.5780 50 1 6.1508 1.4423 -2.1461 51 1 3.6913 1.4436 -2.1340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165491118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:39 Heat of formation + Delta-G solvation = -72.247180 kcal Electronic energy + Delta-G solvation = -27684.424712 eV Core-core repulsion = 23582.445060 eV Total energy + Delta-G solvation = -4101.979653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.60201 -39.06415 -38.31469 -36.58038 -35.55932 -34.93564 -33.85229 -32.18311 -31.46708 -31.25999 -30.86185 -27.74634 -26.79256 -24.89970 -23.61009 -23.22837 -22.69335 -21.76922 -21.65989 -20.49262 -19.24216 -18.30394 -17.86267 -16.74988 -16.31914 -16.01853 -15.99336 -15.64971 -15.39831 -15.28000 -14.75632 -14.62865 -14.39154 -14.38016 -14.13796 -14.02478 -13.84039 -13.48663 -13.44315 -13.13223 -12.95143 -12.59465 -12.57359 -12.07742 -11.86208 -11.83111 -11.72609 -11.57760 -11.52569 -11.46888 -11.42552 -11.16865 -11.08925 -10.95104 -10.39428 -10.24631 -10.21259 -9.51131 -9.46334 -9.43538 -9.12277 -8.47622 -8.07895 -7.96169 -6.41780 -3.82712 0.40777 0.91675 2.50763 2.81424 3.17799 3.26500 3.32528 3.44138 3.90671 4.07761 4.12056 4.23362 4.30052 4.38140 4.46919 4.52864 4.58394 4.80294 4.85471 4.86060 4.89196 4.96307 5.03740 5.15473 5.17299 5.20826 5.25865 5.28704 5.35655 5.41989 5.48817 5.51015 5.55671 5.60076 5.62001 5.75126 5.78902 5.82977 5.91475 5.95589 5.98114 6.01843 6.08824 6.14152 6.26707 6.42424 7.16823 7.18540 7.55098 7.63730 7.89423 8.06171 8.61178 9.17715 9.54226 10.05609 10.75989 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025909 B = 0.001167 C = 0.001124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.444174 B =23988.013316 C =24910.863185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.057 4.057 5 C -0.127 4.127 6 C -0.056 4.056 7 C -0.139 4.139 8 C 0.557 3.443 9 O -0.538 6.538 10 N -0.724 5.724 11 C 0.120 3.880 12 C -0.130 4.130 13 C 0.062 3.938 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.082 4.082 28 C -0.125 4.125 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.401 0.599 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.030 0.970 44 H 0.074 0.926 45 H 0.349 0.651 46 H 0.044 0.956 47 H 0.087 0.913 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.127 0.873 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.734 0.198 16.525 35.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.123 4.123 4 C -0.057 4.057 5 C -0.145 4.145 6 C -0.075 4.075 7 C -0.142 4.142 8 C 0.344 3.656 9 O -0.416 6.416 10 N -0.376 5.376 11 C -0.003 4.003 12 C -0.168 4.168 13 C -0.068 4.068 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.469 6.469 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.101 4.101 28 C -0.143 4.143 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.236 0.764 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.093 0.907 45 H 0.168 0.832 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.226 0.774 49 H 0.081 0.919 50 H 0.145 0.855 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -31.634 -0.491 16.574 35.717 hybrid contribution 0.891 0.915 -0.583 1.404 sum -30.743 0.423 15.992 34.656 Atomic orbital electron populations 1.21790 0.95466 1.01909 1.01925 1.21513 0.95875 0.95693 1.02621 1.20733 0.90427 0.97801 1.03337 1.20151 0.96023 0.96422 0.93148 1.21045 0.93782 1.01723 0.97923 1.21279 0.93846 0.94614 0.97786 1.19944 0.92751 1.06966 0.94573 1.18297 0.87168 0.76303 0.83802 1.90780 1.69892 1.49740 1.31203 1.45929 1.07807 1.75369 1.08530 1.21364 0.78647 1.02764 0.97563 1.21750 0.96319 1.03690 0.95025 1.21826 0.93528 1.00873 0.90547 1.60056 1.07249 1.51264 1.11608 1.21673 0.88405 1.01307 0.96847 1.19811 0.83380 0.84491 0.89740 1.90518 1.53247 1.55482 1.47612 1.41862 1.05031 1.64309 1.08783 1.19711 0.91641 1.47647 0.83999 0.87915 1.25260 0.95586 0.97282 0.99749 1.69610 1.02169 1.50563 1.31966 0.85860 0.78038 0.78373 0.82036 1.20422 1.20899 1.19385 1.21319 0.94571 0.97186 0.97007 1.20997 0.93799 1.01599 0.97942 0.92642 0.92610 0.92532 0.91685 0.91723 0.90676 0.90645 0.85370 0.84615 0.76370 0.91240 0.91011 0.90076 0.91218 0.95203 0.90721 0.83207 0.93797 0.89528 0.77436 0.91855 0.85496 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.91 37.16 0.37 -0.15 16 2 C -0.12 -0.48 5.92 -26.73 -0.16 -0.64 16 3 C -0.09 -0.35 5.34 -27.88 -0.15 -0.50 16 4 C -0.06 -0.34 5.14 -104.53 -0.54 -0.88 16 5 C -0.13 -0.84 9.68 -39.64 -0.38 -1.22 16 6 C -0.06 -0.48 9.60 -39.19 -0.38 -0.85 16 7 C -0.14 -1.25 5.87 -104.97 -0.62 -1.87 16 8 C 0.56 6.13 7.77 -12.33 -0.10 6.03 16 9 O -0.54 -7.86 16.35 5.32 0.09 -7.77 16 10 N -0.72 -6.38 5.51 -61.25 -0.34 -6.72 16 11 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 12 C -0.13 -1.21 5.59 -26.73 -0.15 -1.36 16 13 C 0.06 0.73 5.69 -3.82 -0.02 0.70 16 14 N -0.67 -10.55 6.13 -115.06 -0.70 -11.26 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 17 O -0.58 -15.89 15.78 5.54 0.09 -15.80 16 18 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 23 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 C -0.08 -0.56 9.54 -39.18 -0.37 -0.93 16 28 C -0.13 -0.75 9.68 -39.64 -0.38 -1.13 16 29 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.18 8.14 -51.92 -0.42 -0.25 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.14 1.18 7.65 -52.49 -0.40 0.78 16 38 H 0.40 2.53 6.51 -40.82 -0.27 2.27 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.35 5.61 8.43 -39.29 -0.33 5.28 16 46 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 49 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.13 0.59 6.41 -52.49 -0.34 0.25 16 51 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 LS Contribution 428.02 15.07 6.45 6.45 Total: -1.00 -34.08 428.02 -10.38 -44.46 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.35 Total: 11.42 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.26 Total: 1.46 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.38 Total: -56.24 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.17 Total: -23.57 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.45 Total: 6.45 kcal Total: -34.08 -10.38 -44.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165491118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.789 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds