Wall clock time and date at job start Wed Apr 1 2020 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47237 * 2 1 4 4 C 1.50708 * 109.47076 * 180.02562 * 3 2 1 5 5 C 1.38361 * 119.85196 * 270.25154 * 4 3 2 6 6 C 1.37955 * 120.14138 * 180.25817 * 5 4 3 7 7 C 1.39575 * 119.85263 * 359.49245 * 6 5 4 8 8 C 1.47848 * 120.14487 * 180.27853 * 7 6 5 9 9 O 1.21550 * 119.99883 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00150 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00008 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47072 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47040 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47093 * 180.02562 * 13 12 11 15 15 C 1.46906 * 111.00136 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47118 * 179.97438 * 15 14 13 17 17 O 1.21296 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99925 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99699 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00870 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99529 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00310 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99916 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46805 * 89.99711 * 23 21 19 25 25 H 1.48501 * 109.47055 * 209.99830 * 23 21 19 26 26 H 1.48498 * 109.46938 * 329.99743 * 23 21 19 27 27 C 1.39579 * 119.71401 * 0.25207 * 7 6 5 28 28 C 1.37958 * 119.84937 * 0.02562 * 27 7 6 29 29 H 1.09004 * 109.47067 * 299.99975 * 1 2 3 30 30 H 1.09008 * 109.46994 * 59.99721 * 1 2 3 31 31 H 1.08993 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47067 * 240.00025 * 2 1 3 33 33 H 1.08994 * 109.47476 * 120.00173 * 2 1 3 34 34 H 1.08997 * 109.47366 * 60.00289 * 3 2 1 35 35 H 1.09000 * 109.47611 * 300.00081 * 3 2 1 36 36 H 1.07998 * 119.92846 * 0.02562 * 5 4 3 37 37 H 1.08002 * 120.07573 * 179.77464 * 6 5 4 38 38 H 0.96996 * 119.99601 * 359.97438 * 10 8 7 39 39 H 1.08997 * 109.47252 * 300.00049 * 11 10 8 40 40 H 1.09007 * 109.46893 * 60.00137 * 11 10 8 41 41 H 1.09005 * 109.46987 * 299.99854 * 12 11 10 42 42 H 1.08998 * 109.47290 * 60.00029 * 12 11 10 43 43 H 1.09005 * 109.46818 * 299.99598 * 13 12 11 44 44 H 1.08993 * 109.47662 * 60.00361 * 13 12 11 45 45 H 1.00895 * 111.00310 * 56.04058 * 14 13 12 46 46 H 1.08998 * 109.46520 * 299.99446 * 15 14 13 47 47 H 1.08999 * 109.46730 * 59.99562 * 15 14 13 48 48 H 0.96997 * 119.99667 * 359.97438 * 18 16 15 49 49 H 0.96997 * 120.00213 * 180.02562 * 22 21 19 50 50 H 1.07997 * 120.07575 * 180.02562 * 27 7 6 51 51 H 1.08006 * 119.92205 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2363 1.4370 1.1991 6 6 5.6158 1.4423 1.2055 7 6 6.3162 1.4425 -0.0018 8 6 7.7947 1.4419 -0.0025 9 8 8.4029 1.4418 1.0499 10 7 8.4681 1.4426 -1.1700 11 6 9.9331 1.4426 -1.1706 12 6 10.4425 1.4429 -2.6133 13 6 11.9724 1.4422 -2.6139 14 7 12.4615 1.4431 -3.9991 15 6 13.9300 1.4431 -4.0390 16 6 14.3936 1.4433 -5.4728 17 8 13.5807 1.4430 -6.3731 18 7 15.7116 1.4439 -5.7549 19 6 16.1333 1.4447 -7.0594 20 1 15.4095 1.4443 -7.8611 21 6 17.4920 1.4447 -7.3502 22 7 18.3727 1.4446 -6.3749 23 14 18.0668 1.4450 -9.1277 24 1 18.2189 2.8452 -9.5984 25 1 19.3728 0.7451 -9.2257 26 1 17.0654 0.7450 -9.9717 27 6 5.6148 1.4426 -1.2086 28 6 4.2352 1.4431 -1.2009 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9564 -0.8899 36 1 3.6931 1.4323 2.1325 37 1 6.1527 1.4417 2.1426 38 1 7.9827 1.4431 -2.0097 39 1 10.2966 2.3323 -0.6564 40 1 10.2966 0.5523 -0.6574 41 1 10.0789 0.5529 -3.1271 42 1 10.0789 2.3329 -3.1268 43 1 12.3363 2.3320 -2.1000 44 1 12.3357 0.5520 -2.1006 45 1 12.0861 2.2249 -4.5147 46 1 14.3070 2.3329 -3.5347 47 1 14.3071 0.5529 -3.5356 48 1 16.3616 1.4446 -5.0350 49 1 19.3212 1.4451 -6.5780 50 1 6.1508 1.4423 -2.1461 51 1 3.6913 1.4436 -2.1340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165491118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:38 Heat of formation + Delta-G solvation = -95.451454 kcal Electronic energy + Delta-G solvation = -27685.430925 eV Core-core repulsion = 23582.445060 eV Total energy + Delta-G solvation = -4102.985866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.29881 -40.16145 -39.68878 -37.66016 -36.15908 -35.96743 -35.67112 -33.31169 -32.88528 -31.97783 -31.65781 -28.76827 -27.70834 -26.39824 -24.73987 -23.79082 -23.36957 -22.59695 -22.13691 -21.20065 -21.01654 -19.90869 -18.97854 -17.88951 -17.34675 -17.23563 -16.66069 -16.49756 -16.38658 -16.20548 -16.05820 -15.81810 -15.54647 -15.20986 -15.06080 -14.98030 -14.63270 -14.49328 -14.32191 -14.22742 -13.66678 -13.56700 -13.38925 -13.22046 -13.05241 -12.89911 -12.85246 -12.70896 -12.44186 -12.41295 -12.11573 -12.04934 -12.02542 -11.95109 -11.85990 -11.50447 -11.47992 -11.09936 -10.35464 -10.24909 -10.01776 -9.97196 -9.67648 -9.33696 -8.46703 -5.95714 -0.18546 0.40045 1.38447 1.42359 1.55242 1.79009 2.04813 2.05751 2.29916 2.84303 2.94257 3.20744 3.52087 3.61100 3.80050 3.86102 3.98301 4.00726 4.12483 4.15467 4.19694 4.25606 4.33608 4.41480 4.46891 4.48560 4.53355 4.55763 4.58749 4.68870 4.76308 4.77946 4.85345 4.95302 5.02600 5.05155 5.13333 5.18444 5.25466 5.27706 5.30218 5.37041 5.40000 5.40954 5.48339 5.63157 5.88098 5.92489 6.09418 6.40686 6.46192 6.59900 7.11928 7.12372 7.56023 8.11047 8.70757 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025909 B = 0.001167 C = 0.001124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.444174 B =23988.013316 C =24910.863185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.055 4.055 5 C -0.130 4.130 6 C -0.073 4.073 7 C -0.161 4.161 8 C 0.553 3.447 9 O -0.584 6.584 10 N -0.713 5.713 11 C 0.126 3.874 12 C -0.115 4.115 13 C 0.063 3.937 14 N -0.683 5.683 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.080 0.920 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.080 4.080 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.123 0.877 38 H 0.414 0.586 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.346 0.654 46 H 0.067 0.933 47 H 0.103 0.897 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.148 0.852 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.053 0.408 16.069 36.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.120 4.120 4 C -0.055 4.055 5 C -0.148 4.148 6 C -0.092 4.092 7 C -0.164 4.164 8 C 0.342 3.658 9 O -0.466 6.466 10 N -0.365 5.365 11 C 0.002 3.998 12 C -0.153 4.153 13 C -0.067 4.067 14 N -0.315 5.315 15 C -0.069 4.069 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.098 0.902 21 C -0.211 4.211 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.098 4.098 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.141 0.859 38 H 0.252 0.748 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.164 0.836 46 H 0.085 0.915 47 H 0.121 0.879 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.166 0.834 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -32.961 -0.282 16.119 36.693 hybrid contribution 1.206 0.842 -0.410 1.527 sum -31.756 0.560 15.710 35.433 Atomic orbital electron populations 1.21782 0.94911 1.02005 1.02304 1.21487 0.96320 0.95523 1.02207 1.20764 0.88957 0.97984 1.04280 1.20442 0.97136 0.95022 0.92888 1.21239 0.93047 1.01344 0.99166 1.21327 0.94804 0.95707 0.97384 1.19903 0.91592 1.09127 0.95734 1.18681 0.88117 0.75451 0.83530 1.90747 1.70909 1.52152 1.32777 1.45828 1.07639 1.74324 1.08700 1.21245 0.78980 1.02200 0.97392 1.21590 0.94772 1.04144 0.94841 1.21902 0.94820 1.01647 0.88297 1.60055 1.05983 1.51413 1.14067 1.21538 0.89802 1.03141 0.92387 1.20888 0.82395 0.82214 0.92065 1.90484 1.54065 1.56703 1.49731 1.41936 1.05946 1.64992 1.08132 1.19692 0.92033 1.50040 0.84791 0.90248 1.26039 0.95114 0.96175 1.03814 1.69670 1.02592 1.50287 1.33629 0.84932 0.77681 0.78685 0.77072 1.19561 1.19560 1.19714 1.21548 0.95126 0.96267 0.96906 1.21326 0.93589 1.00713 0.98959 0.92318 0.92182 0.92620 0.91987 0.92305 0.89940 0.89553 0.83782 0.85900 0.74790 0.91744 0.91770 0.90128 0.90254 0.94019 0.90283 0.83577 0.91513 0.87850 0.76972 0.91279 0.83435 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 71.98 0.71 -0.07 16 2 C -0.12 -0.75 5.92 30.59 0.18 -0.57 16 3 C -0.08 -0.50 5.34 29.85 0.16 -0.34 16 4 C -0.05 -0.56 5.14 -19.80 -0.10 -0.66 16 5 C -0.13 -1.63 9.68 22.23 0.22 -1.41 16 6 C -0.07 -1.28 9.60 22.53 0.22 -1.06 16 7 C -0.16 -2.87 5.87 -20.09 -0.12 -2.98 16 8 C 0.55 12.35 7.77 86.79 0.67 13.03 16 9 O -0.58 -17.83 16.35 -3.87 -0.06 -17.89 16 10 N -0.71 -12.00 5.51 -465.97 -2.57 -14.57 16 11 C 0.13 2.26 5.67 86.38 0.49 2.75 16 12 C -0.12 -1.96 5.59 30.59 0.17 -1.79 16 13 C 0.06 1.34 5.69 86.30 0.49 1.83 16 14 N -0.68 -20.55 6.13 -517.93 -3.17 -23.73 16 15 C 0.06 2.16 6.17 85.55 0.53 2.68 16 16 C 0.44 20.75 7.82 87.65 0.69 21.43 16 17 O -0.62 -34.40 15.78 -3.08 -0.05 -34.45 16 18 N -0.57 -29.45 5.29 -306.98 -1.62 -31.08 16 19 C -0.34 -19.14 9.68 84.04 0.81 -18.32 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 22 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 23 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 C -0.08 -0.96 9.54 22.53 0.21 -0.75 16 28 C -0.13 -1.26 9.68 22.23 0.22 -1.04 16 29 H 0.06 0.26 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 35 H 0.09 0.37 8.08 -2.39 -0.02 0.35 16 36 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.12 2.36 7.65 -2.91 -0.02 2.34 16 38 H 0.41 4.57 6.51 -92.71 -0.60 3.96 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.35 10.75 8.43 -89.70 -0.76 9.99 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 48 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 49 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 50 H 0.15 1.02 6.41 -2.91 -0.02 1.00 16 51 H 0.15 0.76 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -74.63 428.02 -0.29 -74.92 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -1.14 Total: 38.88 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.02 Total: 12.57 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -7.08 Total: -118.87 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: -0.11 Total: -52.34 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -74.63 -0.29 -74.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165491118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.535 kcal (2) G-P(sol) polarization free energy of solvation -74.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds