Wall clock time and date at job start Wed Apr 1 2020 04:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47344 * 2 1 4 4 C 1.50703 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.38175 * 119.54887 * 124.99719 * 4 3 2 6 6 C 1.39801 * 118.99540 * 179.97438 * 5 4 3 7 7 C 1.48150 * 120.91689 * 179.97438 * 6 5 4 8 8 O 1.21513 * 120.00335 * 324.10351 * 7 6 5 9 9 N 1.34781 * 119.99774 * 144.09790 * 7 6 5 10 10 C 1.47508 * 118.75742 * 354.05744 * 9 7 6 11 11 C 1.53564 * 111.03020 * 221.60260 * 10 9 7 12 12 C 1.51540 * 109.58054 * 39.97913 * 11 10 9 13 13 O 1.42153 * 108.75168 * 268.59922 * 12 11 10 14 14 C 1.38022 * 119.44231 * 87.22835 * 13 12 11 15 15 H 1.08999 * 109.46552 * 56.57041 * 14 13 12 16 16 C 1.53000 * 109.46962 * 176.56750 * 14 13 12 17 17 N 1.46502 * 109.47042 * 300.01144 * 16 14 13 18 18 C 1.36939 * 119.99815 * 179.72569 * 17 16 14 19 19 H 1.08005 * 120.00187 * 0.27176 * 18 17 16 20 20 C 1.38813 * 120.00108 * 180.27383 * 18 17 16 21 21 N 1.31616 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47278 * 89.99910 * 22 20 18 24 24 H 1.48505 * 109.47341 * 210.00099 * 22 20 18 25 25 H 1.48503 * 109.47021 * 329.99608 * 22 20 18 26 26 C 1.45122 * 118.75522 * 174.02621 * 9 7 6 27 27 C 1.39833 * 118.15837 * 0.25239 * 6 5 4 28 28 C 1.38130 * 119.00170 * 359.53034 * 27 6 5 29 29 N 1.31796 * 119.55300 * 305.02437 * 4 3 2 30 30 H 1.08996 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47066 * 300.00008 * 1 2 3 32 32 H 1.09001 * 109.47332 * 59.99493 * 1 2 3 33 33 H 1.09005 * 109.47066 * 239.99992 * 2 1 3 34 34 H 1.09001 * 109.47332 * 120.00507 * 2 1 3 35 35 H 1.08996 * 109.47106 * 60.00072 * 3 2 1 36 36 H 1.09004 * 109.47153 * 300.00003 * 3 2 1 37 37 H 1.07992 * 120.50155 * 0.02787 * 5 4 3 38 38 H 1.08994 * 109.16689 * 342.00470 * 10 9 7 39 39 H 1.09001 * 109.16810 * 101.20561 * 10 9 7 40 40 H 1.09003 * 109.45520 * 160.00984 * 11 10 9 41 41 H 1.09000 * 109.45953 * 279.94267 * 11 10 9 42 42 H 1.09002 * 109.58699 * 28.37448 * 12 11 10 43 43 H 1.09000 * 109.59287 * 148.81639 * 12 11 10 44 44 H 1.08992 * 109.47214 * 180.02562 * 16 14 13 45 45 H 1.08999 * 109.46849 * 60.01079 * 16 14 13 46 46 H 0.97000 * 120.00230 * 359.97438 * 17 16 14 47 47 H 0.96999 * 120.00268 * 180.02562 * 21 20 18 48 48 H 1.08991 * 109.46338 * 330.72445 * 26 9 7 49 49 H 1.09002 * 109.44824 * 210.75539 * 26 9 7 50 50 H 1.07997 * 120.50135 * 179.72228 * 27 6 5 51 51 H 1.07997 * 119.55194 * 180.22887 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2289 2.1317 -0.9839 6 6 5.6268 2.1243 -0.9719 7 6 6.4007 2.8484 -2.0071 8 8 5.9916 2.8944 -3.1504 9 7 7.5585 3.4563 -1.6807 10 6 7.9633 3.4977 -0.2629 11 6 8.5401 4.8723 0.1057 12 6 7.7283 5.9607 -0.5672 13 8 8.3168 6.2572 -1.8268 14 6 7.9492 5.5238 -2.9368 15 1 6.8693 5.5857 -3.0717 16 6 8.6509 6.0859 -4.1747 17 7 8.2619 7.4857 -4.3631 18 6 8.7728 8.2031 -5.4118 19 1 9.4590 7.7357 -6.1025 20 6 8.4086 9.5311 -5.5871 21 7 7.5727 10.1009 -4.7451 22 14 9.1049 10.5094 -7.0179 23 1 8.2117 10.3677 -8.1957 24 1 9.2001 11.9420 -6.6384 25 1 10.4566 9.9964 -7.3571 26 6 8.3602 4.0447 -2.7377 27 6 6.2743 1.4098 0.0407 28 6 5.5137 0.7524 0.9880 29 7 4.1966 0.7846 0.9399 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.6901 2.6686 -1.7504 38 1 7.0946 3.2946 0.3633 39 1 8.7190 2.7328 -0.0839 40 1 8.4996 5.0050 1.1868 41 1 9.5759 4.9328 -0.2285 42 1 6.7050 5.6153 -0.7141 43 1 7.7287 6.8550 0.0559 44 1 8.3603 5.5072 -5.0513 45 1 9.7307 6.0239 -4.0397 46 1 7.6453 7.9055 -3.7430 47 1 7.3179 11.0287 -4.8678 48 1 8.1988 3.4949 -3.6648 49 1 9.4143 3.9944 -2.4645 50 1 7.3529 1.3749 0.0834 51 1 6.0046 0.2009 1.7762 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200736981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:32 Heat of formation + Delta-G solvation = -49.207707 kcal Electronic energy + Delta-G solvation = -30887.419719 eV Core-core repulsion = 26786.439133 eV Total energy + Delta-G solvation = -4100.980586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.23570 -40.97739 -39.63387 -37.11969 -36.39559 -36.05815 -34.44201 -33.67645 -32.70737 -32.36973 -30.36150 -28.21797 -27.87091 -26.93110 -25.60205 -24.21024 -23.92067 -22.87907 -22.36322 -22.10414 -20.47023 -19.27952 -18.78986 -18.02739 -17.69912 -17.34254 -17.21088 -16.86181 -16.63776 -16.30066 -15.94733 -15.77342 -15.47087 -15.18288 -15.10399 -14.89326 -14.83160 -14.71983 -14.47698 -13.96423 -13.85604 -13.68930 -13.46046 -13.16187 -13.01394 -12.97905 -12.78602 -12.68931 -12.39942 -12.21469 -12.21248 -12.08569 -12.03165 -11.84475 -11.61076 -11.56545 -11.40762 -10.99208 -10.90974 -10.62456 -10.45079 -9.97546 -9.78523 -9.02764 -7.95236 -5.25231 -0.33400 0.01873 1.45023 1.46869 1.49063 1.57404 1.74995 2.55161 2.67042 2.68374 3.10604 3.25165 3.38014 3.56712 3.64889 3.72916 3.86274 3.92466 3.98625 4.00731 4.03590 4.16150 4.19842 4.22970 4.25908 4.35052 4.39319 4.46975 4.56365 4.61088 4.62884 4.67216 4.75968 4.77675 4.83852 4.85456 4.88265 4.96731 4.99348 5.05312 5.08847 5.14436 5.21600 5.32572 5.39213 5.45727 5.46164 5.59600 6.05625 6.25127 6.69433 6.84119 6.88720 7.31306 8.05575 8.30708 9.28751 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.002262 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.990309 B =12373.400977 C =13371.005351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.071 4.071 4 C 0.127 3.873 5 C -0.137 4.137 6 C -0.092 4.092 7 C 0.545 3.455 8 O -0.570 6.570 9 N -0.596 5.596 10 C 0.092 3.908 11 C -0.157 4.157 12 C 0.064 3.936 13 O -0.394 6.394 14 C 0.104 3.896 15 H 0.017 0.983 16 C 0.162 3.838 17 N -0.740 5.740 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.980 3.020 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.095 3.905 27 C -0.140 4.140 28 C 0.106 3.894 29 N -0.480 5.480 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.034 0.966 43 H 0.094 0.906 44 H 0.035 0.965 45 H 0.037 0.963 46 H 0.373 0.627 47 H 0.251 0.749 48 H 0.083 0.917 49 H 0.113 0.887 50 H 0.175 0.825 51 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 -24.417 19.361 31.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.109 4.109 4 C -0.010 4.010 5 C -0.158 4.158 6 C -0.103 4.103 7 C 0.334 3.666 8 O -0.449 6.449 9 N -0.327 5.327 10 C -0.028 4.028 11 C -0.194 4.194 12 C -0.012 4.012 13 O -0.313 6.313 14 C 0.043 3.957 15 H 0.034 0.966 16 C 0.035 3.965 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.809 3.191 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.191 1.191 26 C -0.029 4.029 27 C -0.160 4.160 28 C -0.051 4.051 29 N -0.190 5.190 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.113 0.887 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.102 0.898 49 H 0.131 0.869 50 H 0.192 0.808 51 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.990 -24.682 19.238 31.689 hybrid contribution 0.121 1.472 -1.626 2.197 sum -4.869 -23.210 17.612 29.539 Atomic orbital electron populations 1.21771 0.94526 1.02262 1.02264 1.21373 0.96489 0.94861 1.02092 1.20685 0.86981 0.99164 1.04088 1.21431 0.97793 0.92059 0.89728 1.22137 0.93471 1.00335 0.99862 1.20242 0.94314 0.99693 0.96071 1.18909 0.81050 0.78839 0.87781 1.90809 1.69064 1.62224 1.22849 1.47916 1.20940 1.54505 1.09296 1.22767 1.02306 0.99126 0.78583 1.22463 1.00913 0.92819 1.03253 1.22393 0.95521 0.99689 0.83620 1.86371 1.67616 1.61049 1.16247 1.21893 0.96340 0.91108 0.86333 0.96551 1.20769 0.97237 0.85346 0.93106 1.42419 1.55207 1.08435 1.32214 1.19695 1.20888 0.93544 1.03740 0.90290 1.25677 1.01048 0.98291 1.02200 1.69857 1.39490 1.12729 1.40141 0.85039 0.78299 0.77406 0.78393 1.21393 1.22013 1.19084 1.22220 0.96560 0.92481 0.91685 1.22818 1.03472 0.96466 0.93198 1.23401 0.88512 0.95335 0.97850 1.67420 1.11354 1.16852 1.23365 0.92099 0.91993 0.92570 0.93095 0.91276 0.88925 0.89787 0.85284 0.88030 0.87136 0.86043 0.89876 0.94787 0.88749 0.94736 0.94555 0.79533 0.94019 0.89845 0.86871 0.80809 0.78212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.11 -1.52 5.79 30.59 0.18 -1.34 16 3 C -0.07 -1.06 5.61 29.85 0.17 -0.89 16 4 C 0.13 2.35 6.18 42.55 0.26 2.62 16 5 C -0.14 -3.02 9.33 22.63 0.21 -2.80 16 6 C -0.09 -1.94 5.12 -19.88 -0.10 -2.04 16 7 C 0.55 15.00 7.35 86.88 0.64 15.64 16 8 O -0.57 -21.26 16.40 -3.76 -0.06 -21.32 16 9 N -0.60 -13.65 2.19 -821.05 -1.80 -15.45 16 10 C 0.09 1.23 4.52 86.38 0.39 1.62 16 11 C -0.16 -2.43 5.78 30.31 0.18 -2.25 16 12 C 0.06 1.66 6.38 71.50 0.46 2.11 16 13 O -0.39 -14.29 9.18 -117.95 -1.08 -15.37 16 14 C 0.10 3.84 2.73 31.21 0.09 3.93 16 15 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 16 C 0.16 7.14 5.95 86.38 0.51 7.65 16 17 N -0.74 -41.27 5.49 -343.45 -1.88 -43.15 16 18 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 21 N -0.97 -62.63 13.06 21.65 0.28 -62.35 16 22 Si 0.98 47.98 29.55 68.60 2.03 50.01 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.09 2.61 4.82 87.25 0.42 3.03 16 27 C -0.14 -1.77 7.54 22.63 0.17 -1.59 16 28 C 0.11 1.23 11.17 84.67 0.95 2.17 16 29 N -0.48 -8.10 9.85 -184.04 -1.81 -9.91 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.07 1.01 7.94 -2.39 -0.02 0.99 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.18 7.87 -2.39 -0.02 1.16 16 37 H 0.13 3.10 7.95 -2.91 -0.02 3.07 16 38 H 0.10 1.13 5.12 -2.39 -0.01 1.12 16 39 H 0.11 0.72 7.42 -2.39 -0.02 0.70 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.39 8.01 -2.39 -0.02 1.37 16 42 H 0.03 0.95 7.40 -2.39 -0.02 0.93 16 43 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.37 22.52 7.53 -92.71 -0.70 21.82 16 47 H 0.25 15.56 8.31 -92.71 -0.77 14.78 16 48 H 0.08 2.51 7.36 -2.39 -0.02 2.49 16 49 H 0.11 2.55 8.11 -2.39 -0.02 2.53 16 50 H 0.17 1.10 5.86 -2.91 -0.02 1.09 16 51 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -81.46 406.92 2.43 -79.03 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.23 Total: 29.80 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 6.53 Total: 8.71 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.21 Total: -130.86 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.14 Total: -36.69 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -81.46 2.43 -79.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200736981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.823 kcal (2) G-P(sol) polarization free energy of solvation -81.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds