Wall clock time and date at job start Wed Apr 1 2020 04:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47310 * 2 1 4 4 C 1.50702 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.38026 * 119.50843 * 125.00321 * 4 3 2 6 6 C 1.39932 * 119.12668 * 180.02562 * 5 4 3 7 7 C 1.48165 * 120.88663 * 179.97438 * 6 5 4 8 8 O 1.21516 * 120.00262 * 324.94581 * 7 6 5 9 9 N 1.34778 * 119.99960 * 144.95199 * 7 6 5 10 10 C 1.46927 * 120.62764 * 174.33855 * 9 7 6 11 11 C 1.53194 * 108.89216 * 126.29723 * 10 9 7 12 12 C 1.53354 * 109.14816 * 54.57388 * 11 10 9 13 13 C 1.52999 * 109.41673 * 178.67256 * 12 11 10 14 14 N 1.46500 * 109.47196 * 295.13185 * 13 12 11 15 15 C 1.36937 * 119.99895 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00166 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00324 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00631 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46698 * 60.00257 * 19 17 15 21 21 H 1.48495 * 109.47517 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46934 * 300.00695 * 19 17 15 23 23 C 1.53039 * 109.60875 * 298.71428 * 12 11 10 24 24 C 1.46923 * 120.63119 * 354.31201 * 9 7 6 25 25 C 1.39607 * 118.22042 * 0.24857 * 6 5 4 26 26 C 1.38849 * 118.94799 * 359.50590 * 25 6 5 27 27 O 1.35689 * 119.62405 * 180.22395 * 26 25 6 28 28 N 1.31882 * 119.51578 * 305.02873 * 4 3 2 29 29 H 1.09000 * 109.46757 * 299.99922 * 1 2 3 30 30 H 1.09010 * 109.46791 * 59.99336 * 1 2 3 31 31 H 1.08999 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47156 * 240.00434 * 2 1 3 33 33 H 1.08998 * 109.47163 * 120.00489 * 2 1 3 34 34 H 1.09000 * 109.47147 * 60.00316 * 3 2 1 35 35 H 1.09000 * 109.47837 * 300.00041 * 3 2 1 36 36 H 1.07993 * 120.43439 * 0.04652 * 5 4 3 37 37 H 1.09000 * 109.58215 * 246.15308 * 10 9 7 38 38 H 1.08996 * 109.59025 * 6.43710 * 10 9 7 39 39 H 1.08996 * 109.49730 * 174.65476 * 11 10 9 40 40 H 1.08998 * 109.49912 * 294.75091 * 11 10 9 41 41 H 1.09000 * 109.42214 * 58.75163 * 12 11 10 42 42 H 1.09004 * 109.46866 * 55.12908 * 13 12 11 43 43 H 1.09002 * 109.47411 * 175.12725 * 13 12 11 44 44 H 0.96995 * 120.00076 * 359.97438 * 14 13 12 45 45 H 0.96998 * 120.00238 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.49169 * 301.42052 * 23 12 11 47 47 H 1.09000 * 109.52196 * 181.34388 * 23 12 11 48 48 H 1.09000 * 109.58658 * 353.42256 * 24 9 7 49 49 H 1.08995 * 109.58520 * 113.70224 * 24 9 7 50 50 H 1.07997 * 120.52813 * 179.75030 * 25 6 5 51 51 H 0.96693 * 113.99925 * 270.27949 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2273 2.1313 -0.9831 6 6 5.6266 2.1254 -0.9752 7 6 6.3961 2.8512 -2.0127 8 8 5.9754 2.9103 -3.1512 9 7 7.5628 3.4459 -1.6937 10 6 8.3977 4.0623 -2.7338 11 6 8.6952 5.5117 -2.3367 12 6 9.3157 5.5317 -0.9344 13 6 9.6459 6.9740 -0.5450 14 7 10.6827 7.4960 -1.4387 15 6 11.1416 8.7765 -1.2807 16 1 10.7390 9.4017 -0.4975 17 6 12.1244 9.2710 -2.1272 18 7 12.6148 8.5093 -3.0820 19 14 12.7499 11.0180 -1.9122 20 1 13.3347 11.1709 -0.5558 21 1 13.7891 11.3011 -2.9345 22 1 11.6228 11.9709 -2.0756 23 6 8.3251 4.9453 0.0740 24 6 8.0236 3.4905 -0.2994 25 6 6.2781 1.4126 0.0330 26 6 5.5172 0.7509 0.9875 27 8 6.1362 0.0577 1.9761 28 7 4.1964 0.7838 0.9408 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9564 -0.8899 36 1 3.6868 2.6679 -1.7486 37 1 9.3325 3.5097 -2.8270 38 1 7.8670 4.0459 -3.6857 39 1 9.3910 5.9494 -3.0524 40 1 7.7684 6.0853 -2.3322 41 1 10.2293 4.9372 -0.9338 42 1 8.7493 7.5879 -0.6310 43 1 10.0063 6.9993 0.4835 44 1 11.0441 6.9347 -2.1423 45 1 13.3012 8.8550 -3.6738 46 1 7.4019 5.5244 0.0559 47 1 8.7582 4.9821 1.0736 48 1 7.2451 3.0991 0.3555 49 1 8.9265 2.8893 -0.1935 50 1 7.3569 1.3797 0.0723 51 1 6.3155 -0.8665 1.7556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206522040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:43 Heat of formation + Delta-G solvation = -36.198998 kcal Electronic energy + Delta-G solvation = -30284.904621 eV Core-core repulsion = 26184.488134 eV Total energy + Delta-G solvation = -4100.416486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40704 -39.96818 -37.96238 -37.58354 -35.42981 -34.99620 -33.35368 -32.61408 -31.22721 -30.86543 -30.34465 -27.46314 -26.94645 -24.98037 -23.95347 -23.23542 -22.96166 -22.05928 -21.48510 -20.40297 -19.55324 -18.66898 -17.63153 -17.16767 -16.86135 -16.45943 -16.02987 -15.74384 -15.35538 -15.29122 -14.78058 -14.63600 -14.30987 -14.07190 -13.91099 -13.75068 -13.65010 -13.37990 -13.18128 -12.99073 -12.77254 -12.52554 -12.34160 -12.18946 -12.13840 -11.85723 -11.80776 -11.55809 -11.26639 -11.08390 -11.01769 -10.82874 -10.57705 -10.49738 -10.39868 -10.24644 -10.13624 -10.01179 -9.74587 -9.63043 -9.17857 -8.87556 -8.77295 -6.92470 -5.77340 -3.05674 0.35064 0.51120 2.43669 2.70389 2.96103 3.36137 3.43674 3.48090 3.49056 3.94788 4.01805 4.46843 4.50090 4.57345 4.60562 4.66574 4.70686 4.78033 4.92507 4.95071 4.98106 5.11374 5.16458 5.21812 5.27692 5.34408 5.37525 5.42067 5.45693 5.50633 5.58166 5.59838 5.66097 5.72740 5.82609 5.86973 5.91672 5.93810 6.00429 6.05591 6.12648 6.24616 6.30096 6.45377 6.63791 6.76778 6.88681 7.02293 7.15392 7.45636 7.69024 7.84960 8.41873 9.52967 10.10847 10.45515 11.45476 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.001901 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.873084 B =14722.234600 C =14998.702979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.071 4.071 4 C 0.155 3.845 5 C -0.128 4.128 6 C -0.060 4.060 7 C 0.557 3.443 8 O -0.529 6.529 9 N -0.596 5.596 10 C 0.110 3.890 11 C -0.124 4.124 12 C -0.094 4.094 13 C 0.158 3.842 14 N -0.731 5.731 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.127 4.127 24 C 0.092 3.908 25 C -0.167 4.167 26 C 0.313 3.687 27 O -0.478 6.478 28 N -0.487 5.487 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.153 0.847 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.744 -21.219 7.383 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.109 4.109 4 C 0.017 3.983 5 C -0.149 4.149 6 C -0.071 4.071 7 C 0.345 3.655 8 O -0.407 6.407 9 N -0.328 5.328 10 C -0.011 4.011 11 C -0.162 4.162 12 C -0.113 4.113 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.371 4.371 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.165 4.165 24 C -0.031 4.031 25 C -0.188 4.188 26 C 0.134 3.866 27 O -0.285 6.285 28 N -0.206 5.206 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.110 0.890 49 H 0.093 0.907 50 H 0.171 0.829 51 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -20.338 -20.939 7.775 30.209 hybrid contribution 1.267 0.853 -0.798 1.723 sum -19.072 -20.086 6.977 28.563 Atomic orbital electron populations 1.21786 0.95447 1.01854 1.01941 1.21440 0.95746 0.95358 1.02877 1.20663 0.87504 0.98875 1.03820 1.20977 0.96742 0.91666 0.88950 1.22097 0.92979 0.99849 0.99941 1.20260 0.94346 0.97480 0.94984 1.18156 0.80692 0.79175 0.87527 1.90796 1.68325 1.60707 1.20826 1.48067 1.20379 1.55187 1.09203 1.21813 0.94135 0.94119 0.91060 1.21981 1.01821 0.94480 0.97905 1.21376 0.97656 0.98241 0.94064 1.20660 0.92046 0.90500 0.93724 1.42353 1.44309 1.13700 1.37214 1.19185 1.15919 0.89756 1.12273 0.91322 1.24728 0.99660 0.98280 0.98292 1.69640 1.31763 1.35988 1.20871 0.86265 0.78277 0.84566 0.77062 1.21302 1.21681 1.21313 1.21921 1.00348 0.94455 0.99825 1.22316 1.00499 0.98623 0.81618 1.22492 1.02364 1.00244 0.93739 1.18928 0.86663 0.93837 0.87180 1.84814 1.76942 1.27923 1.38825 1.66781 1.09933 1.19696 1.24227 0.92545 0.92627 0.92585 0.92102 0.90815 0.89471 0.89703 0.83366 0.90974 0.88941 0.89136 0.91758 0.90874 0.96457 0.96375 0.78258 0.93482 0.91462 0.90317 0.89026 0.90672 0.82910 0.74030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.74 5.79 -26.74 -0.15 -0.89 16 3 C -0.07 -0.47 5.61 -27.89 -0.16 -0.63 16 4 C 0.15 1.41 6.18 -82.65 -0.51 0.90 16 5 C -0.13 -1.26 9.31 -39.03 -0.36 -1.62 16 6 C -0.06 -0.64 5.31 -104.68 -0.56 -1.19 16 7 C 0.56 7.25 7.43 -12.18 -0.09 7.16 16 8 O -0.53 -8.54 16.31 5.35 0.09 -8.46 16 9 N -0.60 -7.20 2.97 -173.77 -0.52 -7.72 16 10 C 0.11 1.45 6.43 -3.71 -0.02 1.42 16 11 C -0.12 -1.87 5.27 -26.45 -0.14 -2.01 16 12 C -0.09 -1.42 2.19 -90.42 -0.20 -1.62 16 13 C 0.16 3.10 5.65 -4.04 -0.02 3.07 16 14 N -0.73 -18.15 5.32 -59.91 -0.32 -18.47 16 15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 19 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.13 -1.50 5.36 -26.62 -0.14 -1.65 16 24 C 0.09 0.92 4.83 -3.72 -0.02 0.91 16 25 C -0.17 -1.50 7.41 -38.84 -0.29 -1.79 16 26 C 0.31 2.92 7.74 -17.17 -0.13 2.79 16 27 O -0.48 -3.69 13.56 -18.77 -0.25 -3.94 16 28 N -0.49 -4.92 9.87 -9.59 -0.09 -5.01 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 36 H 0.15 1.34 7.94 -52.49 -0.42 0.92 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16 39 H 0.09 1.57 7.16 -51.93 -0.37 1.20 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.09 0.83 4.45 -51.93 -0.23 0.60 16 49 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 50 H 0.15 1.14 6.14 -52.49 -0.32 0.82 16 51 H 0.40 1.11 9.06 45.56 0.41 1.52 16 LS Contribution 408.19 15.07 6.15 6.15 Total: -1.00 -34.17 408.19 -9.35 -43.52 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.43 Total: 6.72 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.67 Total: -2.91 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.21 Total: -58.47 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.17 Total: -12.40 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.17 -9.35 -43.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206522040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.325 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds