Wall clock time and date at job start Wed Apr 1 2020 04:37:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52992 * 109.47310 * 2 1
4 4 C 1.50702 * 109.47174 * 179.97438 * 3 2 1
5 5 C 1.38026 * 119.50843 * 125.00321 * 4 3 2
6 6 C 1.39932 * 119.12668 * 180.02562 * 5 4 3
7 7 C 1.48165 * 120.88663 * 179.97438 * 6 5 4
8 8 O 1.21516 * 120.00262 * 324.94581 * 7 6 5
9 9 N 1.34778 * 119.99960 * 144.95199 * 7 6 5
10 10 C 1.46927 * 120.62764 * 174.33855 * 9 7 6
11 11 C 1.53194 * 108.89216 * 126.29723 * 10 9 7
12 12 C 1.53354 * 109.14816 * 54.57388 * 11 10 9
13 13 C 1.52999 * 109.41673 * 178.67256 * 12 11 10
14 14 N 1.46500 * 109.47196 * 295.13185 * 13 12 11
15 15 C 1.36937 * 119.99895 * 179.97438 * 14 13 12
16 16 H 1.07999 * 120.00166 * 359.97438 * 15 14 13
17 17 C 1.38809 * 120.00324 * 179.97438 * 15 14 13
18 18 N 1.31621 * 119.99867 * 0.02562 * 17 15 14
19 19 Si 1.86800 * 120.00631 * 179.97438 * 17 15 14
20 20 H 1.48501 * 109.46698 * 60.00257 * 19 17 15
21 21 H 1.48495 * 109.47517 * 180.02562 * 19 17 15
22 22 H 1.48496 * 109.46934 * 300.00695 * 19 17 15
23 23 C 1.53039 * 109.60875 * 298.71428 * 12 11 10
24 24 C 1.46923 * 120.63119 * 354.31201 * 9 7 6
25 25 C 1.39607 * 118.22042 * 0.24857 * 6 5 4
26 26 C 1.38849 * 118.94799 * 359.50590 * 25 6 5
27 27 O 1.35689 * 119.62405 * 180.22395 * 26 25 6
28 28 N 1.31882 * 119.51578 * 305.02873 * 4 3 2
29 29 H 1.09000 * 109.46757 * 299.99922 * 1 2 3
30 30 H 1.09010 * 109.46791 * 59.99336 * 1 2 3
31 31 H 1.08999 * 109.47537 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.47156 * 240.00434 * 2 1 3
33 33 H 1.08998 * 109.47163 * 120.00489 * 2 1 3
34 34 H 1.09000 * 109.47147 * 60.00316 * 3 2 1
35 35 H 1.09000 * 109.47837 * 300.00041 * 3 2 1
36 36 H 1.07993 * 120.43439 * 0.04652 * 5 4 3
37 37 H 1.09000 * 109.58215 * 246.15308 * 10 9 7
38 38 H 1.08996 * 109.59025 * 6.43710 * 10 9 7
39 39 H 1.08996 * 109.49730 * 174.65476 * 11 10 9
40 40 H 1.08998 * 109.49912 * 294.75091 * 11 10 9
41 41 H 1.09000 * 109.42214 * 58.75163 * 12 11 10
42 42 H 1.09004 * 109.46866 * 55.12908 * 13 12 11
43 43 H 1.09002 * 109.47411 * 175.12725 * 13 12 11
44 44 H 0.96995 * 120.00076 * 359.97438 * 14 13 12
45 45 H 0.96998 * 120.00238 * 179.97438 * 18 17 15
46 46 H 1.09000 * 109.49169 * 301.42052 * 23 12 11
47 47 H 1.09000 * 109.52196 * 181.34388 * 23 12 11
48 48 H 1.09000 * 109.58658 * 353.42256 * 24 9 7
49 49 H 1.08995 * 109.58520 * 113.70224 * 24 9 7
50 50 H 1.07997 * 120.52813 * 179.75030 * 25 6 5
51 51 H 0.96693 * 113.99925 * 270.27949 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5470 1.4424 0.0006
5 6 4.2273 2.1313 -0.9831
6 6 5.6266 2.1254 -0.9752
7 6 6.3961 2.8512 -2.0127
8 8 5.9754 2.9103 -3.1512
9 7 7.5628 3.4459 -1.6937
10 6 8.3977 4.0623 -2.7338
11 6 8.6952 5.5117 -2.3367
12 6 9.3157 5.5317 -0.9344
13 6 9.6459 6.9740 -0.5450
14 7 10.6827 7.4960 -1.4387
15 6 11.1416 8.7765 -1.2807
16 1 10.7390 9.4017 -0.4975
17 6 12.1244 9.2710 -2.1272
18 7 12.6148 8.5093 -3.0820
19 14 12.7499 11.0180 -1.9122
20 1 13.3347 11.1709 -0.5558
21 1 13.7891 11.3011 -2.9345
22 1 11.6228 11.9709 -2.0756
23 6 8.3251 4.9453 0.0740
24 6 8.0236 3.4905 -0.2994
25 6 6.2781 1.4126 0.0330
26 6 5.5172 0.7509 0.9875
27 8 6.1362 0.0577 1.9761
28 7 4.1964 0.7838 0.9408
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5140 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 1.6768 1.9562 0.8900
35 1 1.6768 1.9564 -0.8899
36 1 3.6868 2.6679 -1.7486
37 1 9.3325 3.5097 -2.8270
38 1 7.8670 4.0459 -3.6857
39 1 9.3910 5.9494 -3.0524
40 1 7.7684 6.0853 -2.3322
41 1 10.2293 4.9372 -0.9338
42 1 8.7493 7.5879 -0.6310
43 1 10.0063 6.9993 0.4835
44 1 11.0441 6.9347 -2.1423
45 1 13.3012 8.8550 -3.6738
46 1 7.4019 5.5244 0.0559
47 1 8.7582 4.9821 1.0736
48 1 7.2451 3.0991 0.3555
49 1 8.9265 2.8893 -0.1935
50 1 7.3569 1.3797 0.0723
51 1 6.3155 -0.8665 1.7556
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001206522040.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:43
Heat of formation + Delta-G solvation = -36.198998 kcal
Electronic energy + Delta-G solvation = -30284.904621 eV
Core-core repulsion = 26184.488134 eV
Total energy + Delta-G solvation = -4100.416486 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.40704 -39.96818 -37.96238 -37.58354 -35.42981 -34.99620 -33.35368 -32.61408
-31.22721 -30.86543 -30.34465 -27.46314 -26.94645 -24.98037 -23.95347 -23.23542
-22.96166 -22.05928 -21.48510 -20.40297 -19.55324 -18.66898 -17.63153 -17.16767
-16.86135 -16.45943 -16.02987 -15.74384 -15.35538 -15.29122 -14.78058 -14.63600
-14.30987 -14.07190 -13.91099 -13.75068 -13.65010 -13.37990 -13.18128 -12.99073
-12.77254 -12.52554 -12.34160 -12.18946 -12.13840 -11.85723 -11.80776 -11.55809
-11.26639 -11.08390 -11.01769 -10.82874 -10.57705 -10.49738 -10.39868 -10.24644
-10.13624 -10.01179 -9.74587 -9.63043 -9.17857 -8.87556 -8.77295 -6.92470
-5.77340 -3.05674 0.35064 0.51120 2.43669 2.70389 2.96103 3.36137
3.43674 3.48090 3.49056 3.94788 4.01805 4.46843 4.50090 4.57345
4.60562 4.66574 4.70686 4.78033 4.92507 4.95071 4.98106 5.11374
5.16458 5.21812 5.27692 5.34408 5.37525 5.42067 5.45693 5.50633
5.58166 5.59838 5.66097 5.72740 5.82609 5.86973 5.91672 5.93810
6.00429 6.05591 6.12648 6.24616 6.30096 6.45377 6.63791 6.76778
6.88681 7.02293 7.15392 7.45636 7.69024 7.84960 8.41873 9.52967
10.10847 10.45515 11.45476
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.021404 B = 0.001901 C = 0.001866
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1307.873084 B =14722.234600 C =14998.702979
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.116 4.116
3 C -0.071 4.071
4 C 0.155 3.845
5 C -0.128 4.128
6 C -0.060 4.060
7 C 0.557 3.443
8 O -0.529 6.529
9 N -0.596 5.596
10 C 0.110 3.890
11 C -0.124 4.124
12 C -0.094 4.094
13 C 0.158 3.842
14 N -0.731 5.731
15 C -0.240 4.240
16 H 0.069 0.931
17 C -0.014 4.014
18 N -0.934 5.934
19 Si 0.907 3.093
20 H -0.286 1.286
21 H -0.291 1.291
22 H -0.286 1.286
23 C -0.127 4.127
24 C 0.092 3.908
25 C -0.167 4.167
26 C 0.313 3.687
27 O -0.478 6.478
28 N -0.487 5.487
29 H 0.055 0.945
30 H 0.055 0.945
31 H 0.055 0.945
32 H 0.060 0.940
33 H 0.073 0.927
34 H 0.087 0.913
35 H 0.084 0.916
36 H 0.149 0.851
37 H 0.072 0.928
38 H 0.092 0.908
39 H 0.090 0.910
40 H 0.064 0.936
41 H 0.073 0.927
42 H 0.018 0.982
43 H 0.018 0.982
44 H 0.383 0.617
45 H 0.255 0.745
46 H 0.067 0.933
47 H 0.078 0.922
48 H 0.092 0.908
49 H 0.075 0.925
50 H 0.153 0.847
51 H 0.402 0.598
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.744 -21.219 7.383 29.910
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.154 4.154
3 C -0.109 4.109
4 C 0.017 3.983
5 C -0.149 4.149
6 C -0.071 4.071
7 C 0.345 3.655
8 O -0.407 6.407
9 N -0.328 5.328
10 C -0.011 4.011
11 C -0.162 4.162
12 C -0.113 4.113
13 C 0.031 3.969
14 N -0.376 5.376
15 C -0.371 4.371
16 H 0.087 0.913
17 C -0.210 4.210
18 N -0.583 5.583
19 Si 0.738 3.262
20 H -0.213 1.213
21 H -0.217 1.217
22 H -0.213 1.213
23 C -0.165 4.165
24 C -0.031 4.031
25 C -0.188 4.188
26 C 0.134 3.866
27 O -0.285 6.285
28 N -0.206 5.206
29 H 0.075 0.925
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.079 0.921
33 H 0.092 0.908
34 H 0.105 0.895
35 H 0.103 0.897
36 H 0.166 0.834
37 H 0.090 0.910
38 H 0.111 0.889
39 H 0.109 0.891
40 H 0.082 0.918
41 H 0.091 0.909
42 H 0.035 0.965
43 H 0.036 0.964
44 H 0.217 0.783
45 H 0.065 0.935
46 H 0.085 0.915
47 H 0.097 0.903
48 H 0.110 0.890
49 H 0.093 0.907
50 H 0.171 0.829
51 H 0.260 0.740
Dipole moment (debyes) X Y Z Total
from point charges -20.338 -20.939 7.775 30.209
hybrid contribution 1.267 0.853 -0.798 1.723
sum -19.072 -20.086 6.977 28.563
Atomic orbital electron populations
1.21786 0.95447 1.01854 1.01941 1.21440 0.95746 0.95358 1.02877
1.20663 0.87504 0.98875 1.03820 1.20977 0.96742 0.91666 0.88950
1.22097 0.92979 0.99849 0.99941 1.20260 0.94346 0.97480 0.94984
1.18156 0.80692 0.79175 0.87527 1.90796 1.68325 1.60707 1.20826
1.48067 1.20379 1.55187 1.09203 1.21813 0.94135 0.94119 0.91060
1.21981 1.01821 0.94480 0.97905 1.21376 0.97656 0.98241 0.94064
1.20660 0.92046 0.90500 0.93724 1.42353 1.44309 1.13700 1.37214
1.19185 1.15919 0.89756 1.12273 0.91322 1.24728 0.99660 0.98280
0.98292 1.69640 1.31763 1.35988 1.20871 0.86265 0.78277 0.84566
0.77062 1.21302 1.21681 1.21313 1.21921 1.00348 0.94455 0.99825
1.22316 1.00499 0.98623 0.81618 1.22492 1.02364 1.00244 0.93739
1.18928 0.86663 0.93837 0.87180 1.84814 1.76942 1.27923 1.38825
1.66781 1.09933 1.19696 1.24227 0.92545 0.92627 0.92585 0.92102
0.90815 0.89471 0.89703 0.83366 0.90974 0.88941 0.89136 0.91758
0.90874 0.96457 0.96375 0.78258 0.93482 0.91462 0.90317 0.89026
0.90672 0.82910 0.74030
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16
2 C -0.12 -0.74 5.79 -26.74 -0.15 -0.89 16
3 C -0.07 -0.47 5.61 -27.89 -0.16 -0.63 16
4 C 0.15 1.41 6.18 -82.65 -0.51 0.90 16
5 C -0.13 -1.26 9.31 -39.03 -0.36 -1.62 16
6 C -0.06 -0.64 5.31 -104.68 -0.56 -1.19 16
7 C 0.56 7.25 7.43 -12.18 -0.09 7.16 16
8 O -0.53 -8.54 16.31 5.35 0.09 -8.46 16
9 N -0.60 -7.20 2.97 -173.77 -0.52 -7.72 16
10 C 0.11 1.45 6.43 -3.71 -0.02 1.42 16
11 C -0.12 -1.87 5.27 -26.45 -0.14 -2.01 16
12 C -0.09 -1.42 2.19 -90.42 -0.20 -1.62 16
13 C 0.16 3.10 5.65 -4.04 -0.02 3.07 16
14 N -0.73 -18.15 5.32 -59.91 -0.32 -18.47 16
15 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16
16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
17 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16
18 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16
19 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16
20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16
22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
23 C -0.13 -1.50 5.36 -26.62 -0.14 -1.65 16
24 C 0.09 0.92 4.83 -3.72 -0.02 0.91 16
25 C -0.17 -1.50 7.41 -38.84 -0.29 -1.79 16
26 C 0.31 2.92 7.74 -17.17 -0.13 2.79 16
27 O -0.48 -3.69 13.56 -18.77 -0.25 -3.94 16
28 N -0.49 -4.92 9.87 -9.59 -0.09 -5.01 16
29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.05 0.26 8.14 -51.92 -0.42 -0.16 16
31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16
32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16
34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16
35 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16
36 H 0.15 1.34 7.94 -52.49 -0.42 0.92 16
37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.09 1.30 6.99 -51.93 -0.36 0.94 16
39 H 0.09 1.57 7.16 -51.93 -0.37 1.20 16
40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
44 H 0.38 9.89 6.85 -40.82 -0.28 9.61 16
45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
48 H 0.09 0.83 4.45 -51.93 -0.23 0.60 16
49 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16
50 H 0.15 1.14 6.14 -52.49 -0.32 0.82 16
51 H 0.40 1.11 9.06 45.56 0.41 1.52 16
LS Contribution 408.19 15.07 6.15 6.15
Total: -1.00 -34.17 408.19 -9.35 -43.52
By element:
Atomic # 1 Polarization: 14.15 SS G_CDS: -7.43 Total: 6.72 kcal
Atomic # 6 Polarization: -0.23 SS G_CDS: -2.67 Total: -2.91 kcal
Atomic # 7 Polarization: -58.26 SS G_CDS: -0.21 Total: -58.47 kcal
Atomic # 8 Polarization: -12.23 SS G_CDS: -0.17 Total: -12.40 kcal
Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -34.17 -9.35 -43.52 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001206522040.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.325 kcal
(2) G-P(sol) polarization free energy of solvation -34.174 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds