Wall clock time and date at job start Wed Apr 1 2020 04:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47310 * 2 1 4 4 C 1.50702 * 109.47174 * 179.97438 * 3 2 1 5 5 C 1.38026 * 119.50843 * 125.00321 * 4 3 2 6 6 C 1.39932 * 119.12668 * 180.02562 * 5 4 3 7 7 C 1.48165 * 120.88663 * 179.97438 * 6 5 4 8 8 O 1.21516 * 120.00262 * 324.94581 * 7 6 5 9 9 N 1.34778 * 119.99960 * 144.95199 * 7 6 5 10 10 C 1.46927 * 120.62764 * 174.33855 * 9 7 6 11 11 C 1.53194 * 108.89216 * 126.29723 * 10 9 7 12 12 C 1.53354 * 109.14816 * 54.57388 * 11 10 9 13 13 C 1.52999 * 109.41673 * 178.67256 * 12 11 10 14 14 N 1.46500 * 109.47196 * 295.13185 * 13 12 11 15 15 C 1.36937 * 119.99895 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00166 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00324 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00631 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46698 * 60.00257 * 19 17 15 21 21 H 1.48495 * 109.47517 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46934 * 300.00695 * 19 17 15 23 23 C 1.53039 * 109.60875 * 298.71428 * 12 11 10 24 24 C 1.46923 * 120.63119 * 354.31201 * 9 7 6 25 25 C 1.39607 * 118.22042 * 0.24857 * 6 5 4 26 26 C 1.38849 * 118.94799 * 359.50590 * 25 6 5 27 27 O 1.35689 * 119.62405 * 180.22395 * 26 25 6 28 28 N 1.31882 * 119.51578 * 305.02873 * 4 3 2 29 29 H 1.09000 * 109.46757 * 299.99922 * 1 2 3 30 30 H 1.09010 * 109.46791 * 59.99336 * 1 2 3 31 31 H 1.08999 * 109.47537 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47156 * 240.00434 * 2 1 3 33 33 H 1.08998 * 109.47163 * 120.00489 * 2 1 3 34 34 H 1.09000 * 109.47147 * 60.00316 * 3 2 1 35 35 H 1.09000 * 109.47837 * 300.00041 * 3 2 1 36 36 H 1.07993 * 120.43439 * 0.04652 * 5 4 3 37 37 H 1.09000 * 109.58215 * 246.15308 * 10 9 7 38 38 H 1.08996 * 109.59025 * 6.43710 * 10 9 7 39 39 H 1.08996 * 109.49730 * 174.65476 * 11 10 9 40 40 H 1.08998 * 109.49912 * 294.75091 * 11 10 9 41 41 H 1.09000 * 109.42214 * 58.75163 * 12 11 10 42 42 H 1.09004 * 109.46866 * 55.12908 * 13 12 11 43 43 H 1.09002 * 109.47411 * 175.12725 * 13 12 11 44 44 H 0.96995 * 120.00076 * 359.97438 * 14 13 12 45 45 H 0.96998 * 120.00238 * 179.97438 * 18 17 15 46 46 H 1.09000 * 109.49169 * 301.42052 * 23 12 11 47 47 H 1.09000 * 109.52196 * 181.34388 * 23 12 11 48 48 H 1.09000 * 109.58658 * 353.42256 * 24 9 7 49 49 H 1.08995 * 109.58520 * 113.70224 * 24 9 7 50 50 H 1.07997 * 120.52813 * 179.75030 * 25 6 5 51 51 H 0.96693 * 113.99925 * 270.27949 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2273 2.1313 -0.9831 6 6 5.6266 2.1254 -0.9752 7 6 6.3961 2.8512 -2.0127 8 8 5.9754 2.9103 -3.1512 9 7 7.5628 3.4459 -1.6937 10 6 8.3977 4.0623 -2.7338 11 6 8.6952 5.5117 -2.3367 12 6 9.3157 5.5317 -0.9344 13 6 9.6459 6.9740 -0.5450 14 7 10.6827 7.4960 -1.4387 15 6 11.1416 8.7765 -1.2807 16 1 10.7390 9.4017 -0.4975 17 6 12.1244 9.2710 -2.1272 18 7 12.6148 8.5093 -3.0820 19 14 12.7499 11.0180 -1.9122 20 1 13.3347 11.1709 -0.5558 21 1 13.7891 11.3011 -2.9345 22 1 11.6228 11.9709 -2.0756 23 6 8.3251 4.9453 0.0740 24 6 8.0236 3.4905 -0.2994 25 6 6.2781 1.4126 0.0330 26 6 5.5172 0.7509 0.9875 27 8 6.1362 0.0577 1.9761 28 7 4.1964 0.7838 0.9408 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9564 -0.8899 36 1 3.6868 2.6679 -1.7486 37 1 9.3325 3.5097 -2.8270 38 1 7.8670 4.0459 -3.6857 39 1 9.3910 5.9494 -3.0524 40 1 7.7684 6.0853 -2.3322 41 1 10.2293 4.9372 -0.9338 42 1 8.7493 7.5879 -0.6310 43 1 10.0063 6.9993 0.4835 44 1 11.0441 6.9347 -2.1423 45 1 13.3012 8.8550 -3.6738 46 1 7.4019 5.5244 0.0559 47 1 8.7582 4.9821 1.0736 48 1 7.2451 3.0991 0.3555 49 1 8.9265 2.8893 -0.1935 50 1 7.3569 1.3797 0.0723 51 1 6.3155 -0.8665 1.7556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206522040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:42 Heat of formation + Delta-G solvation = -60.593107 kcal Electronic energy + Delta-G solvation = -30285.962429 eV Core-core repulsion = 26184.488134 eV Total energy + Delta-G solvation = -4101.474294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20920 -40.88107 -39.02849 -38.29665 -36.68353 -35.90622 -34.64473 -33.74600 -32.28083 -32.04715 -31.54054 -28.47655 -27.93454 -26.15382 -25.33666 -24.15686 -23.90340 -23.22502 -22.33193 -21.46352 -20.49508 -19.52459 -19.08869 -18.40209 -17.75345 -17.23634 -16.96004 -16.68933 -16.53044 -16.18967 -15.85437 -15.65856 -15.42800 -15.35134 -15.21391 -14.88937 -14.64027 -14.43714 -14.21059 -13.98476 -13.76341 -13.61257 -13.37336 -13.10063 -12.98685 -12.93138 -12.72687 -12.69591 -12.36753 -12.28185 -12.19711 -12.04467 -11.97238 -11.71370 -11.60098 -11.54961 -11.43996 -11.36105 -10.93296 -10.89894 -10.47125 -9.86058 -9.80497 -8.98377 -7.95078 -5.23129 -0.42449 -0.16092 1.46837 1.49212 1.49543 1.55676 1.76297 2.32353 2.55919 2.66425 3.10992 3.38151 3.39264 3.68492 3.76277 3.80435 3.82779 3.86515 4.01557 4.07881 4.17736 4.21298 4.24710 4.30219 4.35984 4.38499 4.53152 4.56213 4.67072 4.69271 4.72225 4.79016 4.81944 4.88126 4.91733 4.94073 4.97168 5.00826 5.05846 5.13373 5.20071 5.24122 5.34719 5.40255 5.45774 5.47884 5.49432 5.52658 6.18439 6.27487 6.55788 6.81702 6.85707 7.34166 8.11015 8.34430 9.27955 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.001901 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.873084 B =14722.234600 C =14998.702979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.071 4.071 4 C 0.155 3.845 5 C -0.136 4.136 6 C -0.071 4.071 7 C 0.557 3.443 8 O -0.569 6.569 9 N -0.594 5.594 10 C 0.118 3.882 11 C -0.116 4.116 12 C -0.083 4.083 13 C 0.156 3.844 14 N -0.743 5.743 15 C -0.248 4.248 16 H 0.072 0.928 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.972 3.028 20 H -0.277 1.277 21 H -0.295 1.295 22 H -0.280 1.280 23 C -0.120 4.120 24 C 0.094 3.906 25 C -0.160 4.160 26 C 0.314 3.686 27 O -0.484 6.484 28 N -0.502 5.502 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.011 0.989 43 H 0.023 0.977 44 H 0.375 0.625 45 H 0.251 0.749 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.100 0.900 50 H 0.172 0.828 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.380 -22.180 9.239 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.109 4.109 4 C 0.017 3.983 5 C -0.156 4.156 6 C -0.081 4.081 7 C 0.346 3.654 8 O -0.448 6.448 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.154 4.154 12 C -0.102 4.102 13 C 0.030 3.970 14 N -0.386 5.386 15 C -0.380 4.380 16 H 0.090 0.910 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.207 1.207 23 C -0.159 4.159 24 C -0.027 4.027 25 C -0.181 4.181 26 C 0.135 3.865 27 O -0.294 6.294 28 N -0.222 5.222 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.168 0.832 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.029 0.971 43 H 0.041 0.959 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.126 0.874 49 H 0.118 0.882 50 H 0.189 0.811 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -20.992 -21.925 9.688 31.863 hybrid contribution 1.419 1.112 -1.309 2.227 sum -19.573 -20.813 8.379 29.774 Atomic orbital electron populations 1.21768 0.94416 1.02221 1.02383 1.21383 0.96583 0.94931 1.02083 1.20759 0.86059 0.99286 1.04752 1.21268 0.97738 0.90935 0.88348 1.22198 0.92887 1.00219 1.00334 1.20115 0.94536 0.98356 0.95142 1.18497 0.80585 0.78846 0.87478 1.90774 1.69235 1.62270 1.22569 1.48110 1.20026 1.54561 1.09819 1.21629 0.94833 0.92950 0.90992 1.21830 1.00374 0.95659 0.97568 1.21264 0.98730 0.95510 0.94718 1.20834 0.90225 0.93022 0.92951 1.42551 1.45256 1.12927 1.37836 1.19591 1.15503 0.91046 1.11860 0.90960 1.25531 1.00447 1.02183 0.98454 1.69795 1.32456 1.37645 1.21868 0.85237 0.77545 0.80070 0.77056 1.20331 1.22080 1.20676 1.21877 0.99046 0.95319 0.99625 1.22487 1.02079 0.97671 0.80461 1.22567 1.03144 0.99461 0.92942 1.19041 0.86535 0.93743 0.87178 1.84768 1.76639 1.29579 1.38420 1.66858 1.10537 1.20123 1.24693 0.92209 0.92072 0.92289 0.92575 0.91901 0.88938 0.88337 0.83204 0.89449 0.90178 0.91928 0.93037 0.90635 0.97132 0.95864 0.79207 0.94017 0.92054 0.88426 0.87389 0.88234 0.81119 0.71551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.11 -1.29 5.79 30.59 0.18 -1.11 16 3 C -0.07 -0.85 5.61 29.85 0.17 -0.68 16 4 C 0.15 2.62 6.18 42.50 0.26 2.88 16 5 C -0.14 -2.54 9.31 22.63 0.21 -2.32 16 6 C -0.07 -1.41 5.31 -19.90 -0.11 -1.52 16 7 C 0.56 14.07 7.43 86.88 0.65 14.72 16 8 O -0.57 -18.52 16.31 -3.77 -0.06 -18.58 16 9 N -0.59 -13.52 2.97 -821.97 -2.44 -15.96 16 10 C 0.12 3.06 6.43 86.36 0.56 3.61 16 11 C -0.12 -3.55 5.27 30.78 0.16 -3.39 16 12 C -0.08 -2.43 2.19 -10.66 -0.02 -2.45 16 13 C 0.16 6.05 5.65 86.38 0.49 6.54 16 14 N -0.74 -37.24 5.32 -343.45 -1.83 -39.07 16 15 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 16 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 17 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 18 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 19 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 C -0.12 -2.57 5.36 30.67 0.16 -2.40 16 24 C 0.09 1.63 4.83 86.36 0.42 2.04 16 25 C -0.16 -2.49 7.41 22.75 0.17 -2.33 16 26 C 0.31 5.14 7.74 84.78 0.66 5.80 16 27 O -0.48 -6.15 13.56 -90.08 -1.22 -7.37 16 28 N -0.50 -9.30 9.87 -297.15 -2.93 -12.24 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.86 7.94 -2.39 -0.02 0.84 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 0.90 7.86 -2.39 -0.02 0.88 16 36 H 0.15 2.66 7.94 -2.91 -0.02 2.64 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.30 6.99 -2.39 -0.02 2.29 16 39 H 0.06 2.27 7.16 -2.39 -0.02 2.25 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.38 19.81 6.85 -92.71 -0.63 19.18 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.11 1.60 4.45 -2.39 -0.01 1.59 16 49 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 50 H 0.17 1.96 6.14 -2.91 -0.02 1.95 16 51 H 0.42 1.17 9.06 -74.06 -0.67 0.50 16 Total: -1.00 -73.87 408.19 -0.56 -74.43 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -0.35 Total: 27.19 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.97 Total: 1.95 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -6.92 Total: -125.85 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.28 Total: -25.95 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.87 -0.56 -74.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206522040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -73.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds