Wall clock time and date at job start Wed Apr 1 2020 04:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47312 * 41.91986 * 3 2 1 5 5 C 1.50700 * 112.90362 * 316.03044 * 4 3 2 6 6 O 1.21275 * 120.00308 * 103.72434 * 5 4 3 7 7 N 1.34781 * 120.00336 * 283.72016 * 5 4 3 8 8 C 1.46932 * 120.62637 * 5.24667 * 7 5 4 9 9 C 1.53193 * 108.77498 * 126.36928 * 8 7 5 10 10 C 1.53035 * 109.31150 * 54.63306 * 9 8 7 11 11 C 1.53047 * 109.53867 * 298.63454 * 10 9 8 12 12 H 1.08993 * 109.49601 * 301.37812 * 11 10 9 13 13 N 1.46898 * 109.49615 * 181.31523 * 11 10 9 14 14 C 1.46909 * 111.00190 * 85.00152 * 13 11 10 15 15 C 1.50694 * 109.47548 * 180.02562 * 14 13 11 16 16 O 1.21293 * 119.99953 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00310 * 180.02562 * 15 14 13 18 18 C 1.37090 * 120.00497 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99797 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00382 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99825 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00202 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47127 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47355 * 120.00029 * 22 20 18 25 25 H 1.48500 * 109.47186 * 240.00171 * 22 20 18 26 26 C 1.46912 * 120.63427 * 184.96838 * 7 5 4 27 27 C 1.53773 * 113.61348 * 184.78021 * 4 3 2 28 28 C 1.53778 * 87.17498 * 270.83967 * 27 4 3 29 29 C 1.53774 * 113.61477 * 87.28157 * 4 3 2 30 30 H 4.44653 * 5.63301 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.47005 * 281.91448 * 3 2 1 32 32 H 1.09002 * 109.47078 * 161.92232 * 3 2 1 33 33 H 1.08997 * 109.58890 * 246.15763 * 8 7 5 34 34 H 1.09001 * 109.58514 * 6.58144 * 8 7 5 35 35 H 1.08996 * 109.49853 * 174.58427 * 9 8 7 36 36 H 1.09002 * 109.49484 * 294.64928 * 9 8 7 37 37 H 1.09000 * 109.46224 * 58.65310 * 10 9 8 38 38 H 1.09003 * 109.46320 * 178.61763 * 10 9 8 39 39 H 1.00899 * 111.00449 * 208.95132 * 13 11 10 40 40 H 1.09000 * 109.46929 * 300.00550 * 14 13 11 41 41 H 1.09000 * 109.46794 * 59.99689 * 14 13 11 42 42 H 0.97003 * 119.99434 * 359.97438 * 17 15 14 43 43 H 0.96997 * 119.99709 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.58990 * 353.41965 * 26 7 5 45 45 H 1.09004 * 109.59390 * 113.84492 * 26 7 5 46 46 H 1.09005 * 113.61785 * 25.43428 * 27 4 3 47 47 H 1.09002 * 113.61737 * 156.24978 * 27 4 3 48 48 H 1.08997 * 113.61460 * 89.15743 * 28 27 4 49 49 H 1.09001 * 113.61736 * 220.06042 * 28 27 4 50 50 H 1.08996 * 113.61458 * 203.66648 * 29 4 3 51 51 H 1.09004 * 113.61802 * 334.48328 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0724 -0.9637 5 6 2.4107 -2.3759 -0.8385 6 8 1.5849 -2.6846 -1.6714 7 7 2.6613 -3.1989 0.1991 8 6 3.5731 -2.7893 1.2760 9 6 2.8504 -2.9407 2.6182 10 6 2.3235 -4.3714 2.7508 11 6 1.3222 -4.6541 1.6284 12 1 0.5024 -3.9380 1.6833 13 7 0.7934 -6.0168 1.7749 14 6 -0.3411 -6.0439 2.7078 15 6 -0.8552 -7.4549 2.8327 16 8 -0.3287 -8.3499 2.2059 17 7 -1.9007 -7.7222 3.6402 18 6 -2.3688 -9.0057 3.7534 19 1 -1.9000 -9.8027 3.1953 20 6 -3.4463 -9.2814 4.5863 21 7 -4.0170 -8.3116 5.2651 22 14 -4.0836 -11.0304 4.7411 23 1 -3.2742 -11.9302 3.8806 24 1 -3.9787 -11.4722 6.1550 25 1 -5.5042 -11.0795 4.3113 26 6 2.0233 -4.5199 0.2778 27 6 4.6857 -1.2340 -0.9516 28 6 4.7321 -0.1556 -2.0469 29 6 3.2986 -0.5808 -2.4138 30 1 -1.0499 -0.0003 0.0000 31 1 3.0094 -0.2113 1.0055 32 1 3.0089 0.9778 -0.3189 33 1 4.4598 -3.4232 1.2649 34 1 3.8637 -1.7486 1.1327 35 1 3.5457 -2.7323 3.4313 36 1 2.0168 -2.2398 2.6636 37 1 3.1551 -5.0726 2.6806 38 1 1.8301 -4.4888 3.7156 39 1 0.5342 -6.4024 0.8792 40 1 -0.0160 -5.6881 3.6855 41 1 -1.1357 -5.3991 2.3323 42 1 -2.3219 -7.0063 4.1412 43 1 -4.7694 -8.5039 5.8462 44 1 1.2916 -4.6208 -0.5238 45 1 2.7810 -5.2979 0.1837 46 1 5.1500 -0.9254 -0.0149 47 1 5.0240 -2.2138 -1.2889 48 1 4.7999 0.8600 -1.6571 49 1 5.4628 -0.3593 -2.8296 50 1 3.2577 -1.3814 -3.1522 51 1 2.6421 0.2543 -2.6581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208318640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:49 Heat of formation + Delta-G solvation = 6.049983 kcal Electronic energy + Delta-G solvation = -30937.530870 eV Core-core repulsion = 26838.946437 eV Total energy + Delta-G solvation = -4098.584433 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37186 -39.06117 -38.14956 -37.33970 -35.10910 -33.98247 -33.82738 -32.35142 -31.24325 -30.45396 -29.27059 -26.52719 -26.39716 -25.98612 -24.66752 -23.79927 -22.67461 -21.01701 -19.82074 -19.31784 -19.13509 -18.41171 -17.87439 -16.89454 -16.50495 -16.27536 -15.80691 -15.34008 -15.17164 -15.05371 -14.89042 -14.44141 -14.40008 -14.04017 -13.84020 -13.74167 -13.62478 -13.42981 -13.21656 -12.87425 -12.75499 -12.45328 -12.23028 -12.16335 -11.85761 -11.62488 -11.52187 -11.39218 -11.32881 -11.10578 -11.08426 -10.88255 -10.78336 -10.69979 -10.38939 -10.33341 -10.31049 -10.21358 -9.70513 -9.50913 -8.80880 -8.44622 -8.08327 -7.94884 -6.40658 -3.81334 2.42100 2.58000 2.64591 2.74918 3.17283 3.27711 3.35264 3.85064 3.92030 3.93134 4.09580 4.21105 4.28788 4.31090 4.36060 4.44344 4.62878 4.72881 4.80078 4.91890 4.97713 5.07745 5.11938 5.13019 5.19714 5.25230 5.26917 5.32364 5.36798 5.44503 5.45751 5.55560 5.61262 5.64505 5.69050 5.75102 5.81885 5.82000 5.89716 5.94414 5.97915 6.07372 6.19341 6.30218 6.34379 7.18140 7.25307 7.43446 7.56632 7.63930 8.02369 8.07710 8.62412 9.19135 9.55510 10.06928 10.77221 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.002003 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.239843 B =13975.370201 C =14200.330787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.201 4.201 3 C 0.019 3.981 4 C -0.103 4.103 5 C 0.535 3.465 6 O -0.535 6.535 7 N -0.605 5.605 8 C 0.101 3.899 9 C -0.136 4.136 10 C -0.109 4.109 11 C 0.076 3.924 12 H 0.044 0.956 13 N -0.661 5.661 14 C 0.053 3.947 15 C 0.442 3.558 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.110 3.890 27 C -0.126 4.126 28 C -0.142 4.142 29 C -0.110 4.110 30 H 0.216 0.784 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.351 0.649 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.171 22.265 -8.430 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C -0.018 4.018 4 C -0.106 4.106 5 C 0.322 3.678 6 O -0.411 6.411 7 N -0.338 5.338 8 C -0.022 4.022 9 C -0.175 4.175 10 C -0.147 4.147 11 C -0.035 4.035 12 H 0.062 0.938 13 N -0.294 5.294 14 C -0.080 4.080 15 C 0.227 3.773 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.012 4.012 27 C -0.164 4.164 28 C -0.179 4.179 29 C -0.148 4.148 30 H 0.233 0.767 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.171 0.829 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.108 0.892 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.378 21.275 -8.710 29.432 hybrid contribution -1.715 -0.040 0.175 1.725 sum 16.663 21.234 -8.535 28.309 Atomic orbital electron populations 1.24917 0.95996 0.99385 0.99665 1.22668 0.94201 1.01729 1.01520 1.18494 0.85610 0.98443 0.99207 1.22105 0.96171 0.93357 0.98957 1.20246 0.82068 0.84714 0.80757 1.90693 1.33595 1.75032 1.41732 1.47972 1.46239 1.17103 1.22510 1.21999 0.92408 1.01143 0.86616 1.21960 1.00705 0.98223 0.96618 1.21538 0.99208 0.95203 0.98745 1.21732 0.96672 0.90480 0.94619 0.93778 1.60106 1.34834 1.18165 1.16270 1.21708 0.91880 0.96595 0.97840 1.19789 0.83383 0.89616 0.84501 1.90524 1.60013 1.47166 1.48936 1.41868 1.28129 1.10296 1.39811 1.19754 1.12554 0.85756 1.24665 0.87853 1.25272 0.96762 0.99676 0.96351 1.69624 1.23832 1.32154 1.28748 0.85794 0.78510 0.81943 0.78063 1.19203 1.20755 1.20779 1.21631 0.98218 0.83653 0.97743 1.23121 0.92469 1.00592 1.00202 1.22906 0.97325 0.98883 0.98823 1.22870 0.96535 1.01474 0.93942 0.76730 0.88775 0.88385 0.91032 0.89354 0.90340 0.91627 0.90824 0.91384 0.82918 0.89633 0.93885 0.77483 0.91946 0.89170 0.90353 0.90143 0.89178 0.89653 0.90726 0.89170 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 19.25 29.55 0.57 -1.40 16 2 C -0.20 -2.10 12.25 -37.12 -0.45 -2.56 16 3 C 0.02 0.13 4.89 -29.52 -0.14 -0.01 16 4 C -0.10 -0.83 0.37 -154.86 -0.06 -0.89 16 5 C 0.53 6.37 5.50 -10.98 -0.06 6.31 16 6 O -0.53 -8.66 15.85 5.56 0.09 -8.57 16 7 N -0.60 -6.43 2.98 -173.03 -0.52 -6.95 16 8 C 0.10 0.75 5.46 -3.71 -0.02 0.73 16 9 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 10 C -0.11 -1.21 5.40 -26.69 -0.14 -1.35 16 11 C 0.08 1.00 2.63 -67.81 -0.18 0.82 16 12 H 0.04 0.63 7.80 -51.93 -0.41 0.22 16 13 N -0.66 -10.93 5.94 -108.10 -0.64 -11.57 16 14 C 0.05 0.96 5.97 -4.97 -0.03 0.93 16 15 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 16 O -0.58 -16.07 15.78 5.55 0.09 -15.98 16 17 N -0.56 -14.56 5.29 -10.97 -0.06 -14.62 16 18 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 19 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 22 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 26 C 0.11 1.38 5.68 -3.94 -0.02 1.36 16 27 C -0.13 -0.68 5.53 -25.92 -0.14 -0.82 16 28 C -0.14 -0.69 7.75 -25.83 -0.20 -0.89 16 29 C -0.11 -0.86 6.83 -25.83 -0.18 -1.04 16 30 H 0.22 1.79 7.80 -54.10 -0.42 1.36 16 31 H 0.09 0.51 6.34 -51.93 -0.33 0.19 16 32 H 0.10 0.49 7.39 -51.93 -0.38 0.11 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.48 2.98 -51.93 -0.15 0.32 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.81 7.43 -51.93 -0.39 0.43 16 39 H 0.35 6.09 8.06 -39.29 -0.32 5.78 16 40 H 0.09 1.44 7.42 -51.93 -0.39 1.05 16 41 H 0.04 0.73 8.06 -51.93 -0.42 0.32 16 42 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.08 0.27 7.18 -51.93 -0.37 -0.10 16 47 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 48 H 0.08 0.30 7.72 -51.93 -0.40 -0.10 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.09 0.84 7.93 -51.93 -0.41 0.43 16 51 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 407.85 15.07 6.15 6.15 Total: -1.00 -34.84 407.85 -8.70 -43.54 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -7.96 Total: 13.46 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.55 Total: 2.37 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.49 Total: -57.25 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.18 Total: -24.55 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.84 -8.70 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208318640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.589 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds